Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4b99dca85cd277e12fd8213d6abdf6e283fe4fb6 https://github.com/galaxyproject/galaxy/commit/4b99dca85cd277e12fd8213d6abdf... Author: rhpvorderman <r.h.p.vorderman@lumc.nl> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Fix default job script by moving env setup The part where pythonpath was evaluated totally ignored any variables set in the env setup. That is now fixed. All credits go to @mvdbeek for finding the cause of the issue and proposing the solution. Commit: bbce9a1e6f1a077dfbbb795f643f5578b40436f2 https://github.com/galaxyproject/galaxy/commit/bbce9a1e6f1a077dfbbb795f643f5... Author: rhpvorderman <r.h.p.vorderman@lumc.nl> Date: 2018-06-08 (Fri, 08 Jun 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Change location of env setup Commit: 77cd1fc30a6beabc3cde7ae22e1f62dd2560b94c https://github.com/galaxyproject/galaxy/commit/77cd1fc30a6beabc3cde7ae22e1f6... Author: mvdbeek <m.vandenbeek@gmail.com> Date: 2018-06-10 (Sun, 10 Jun 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Need to set default HOME/TMP before env_setup_commands Otherwise the defaults take precedence Commit: 7f2117b26b531edc52b564f7435503c6072a233c https://github.com/galaxyproject/galaxy/commit/7f2117b26b531edc52b564f743550... Author: rhpvorderman <r.h.p.vorderman@lumc.nl> Date: 2018-06-11 (Mon, 11 Jun 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Merge pull request #1 from mvdbeek/rhpvorderman-patch-1 Need to set default HOME/TMP before env_setup_commands Commit: 47c03ab2514d833225b41ff0c67f3652aa4c6b22 https://github.com/galaxyproject/galaxy/commit/47c03ab2514d833225b41ff0c67f3... Author: Dannon <dannon.baker@gmail.com> Date: 2018-06-11 (Mon, 11 Jun 2018) Changed paths: M lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh Log Message: ----------- Merge pull request #6305 from rhpvorderman/patch-1 Fix default job script by moving env setup Compare: https://github.com/galaxyproject/galaxy/compare/ada8a7f6fb78...47c03ab2514d **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.