1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/07eb5affb4c0/ changeset: 07eb5affb4c0 user: richard_burhans date: 2012-04-02 20:28:08 summary: changes to aaChanges interface affected #: 1 file diff -r 758f425498670dbe992701df81d277dbc7cd6de7 -r 07eb5affb4c0c74f1bf95d2fb850f926d4defaf2 tools/evolution/codingSnps.xml --- a/tools/evolution/codingSnps.xml +++ b/tools/evolution/codingSnps.xml @@ -2,7 +2,7 @@ <description>amino-acid changes caused by a set of SNPs</description><command interpreter="perl"> - codingSnps.pl $input1 $input2 Galaxy build=${input1.metadata.dbkey} loc=${GALAXY_DATA_INDEX_DIR}/codingSnps.loc chr=${input1.metadata.chromCol} start=${input1.metadata.startCol} end=${input1.metadata.endCol} snp=$col1 keepColumns=$keep strand=${strand_source.strand_col} > $out_file1 + codingSnps.pl $input1 $input2 Galaxy build=${input1.metadata.dbkey} loc=${GALAXY_DATA_INDEX_DIR}/codingSnps.loc chr=${input1.metadata.chromCol} start=${input1.metadata.startCol} end=${input1.metadata.endCol} snp=$col1 keepColumns=$keep strand=${strand_source.strand_col} unique=$uniqpos > $out_file1 </command><inputs> @@ -17,6 +17,10 @@ <option value="0" selected="true">No</option><option value="1">Yes</option></param> + <param name="uniqpos" type="select" label="Only report each SNP position once"> + <option value="1" selected="true">Yes</option> + <option value="0">No</option> + </param><conditional name="strand_source"><param name="strand_choice" type="select" label="Strand info"><option value="data_column">a column in the dataset</option> @@ -54,6 +58,7 @@ <param name="input2" ftype="interval" value="codingSnps_inputGenes1.bed" dbkey="hg18" /><param name="strand_choice" value="all_pos" /><param name="strand_col" value="+" /> + <param name="uniqpos" value="0" /><output name="output" file="codingSnps_output1.interval" /></test><test> @@ -62,6 +67,7 @@ <param name="col1" value="4" /><param name="strand_choice" value="all_pos" /><param name="strand_col" value="+" /> + <param name="uniqpos" value="0" /><output name="output" file="codingSnps_output2.interval" /></test><test> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.