3 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/46b60df0b241/ Changeset: 46b60df0b241 Branch: next-stable User: jgoecks Date: 2013-08-06 16:59:43 Summary: Add requirements tags to tophat wrapper. Affected #: 1 file diff -r ccabe7fd484c910ad85e7b6550e59f37ea39dfd8 -r 46b60df0b241daf324f16e14cd43e06bd13240c5 tools/ngs_rna/tophat_wrapper.xml --- a/tools/ngs_rna/tophat_wrapper.xml +++ b/tools/ngs_rna/tophat_wrapper.xml @@ -3,6 +3,8 @@ <description>Find splice junctions using RNA-seq data</description><version_command>tophat --version</version_command><requirements> + <requirement type="package">samtools</requirement> + <requirement type="package">bowtie</requirement><requirement type="package">tophat</requirement></requirements><command interpreter="python"> https://bitbucket.org/galaxy/galaxy-central/commits/e3f6a9510978/ Changeset: e3f6a9510978 Branch: next-stable User: jgoecks Date: 2013-08-06 17:01:31 Summary: Add tophat2 to main tool conf. Affected #: 1 file diff -r 46b60df0b241daf324f16e14cd43e06bd13240c5 -r e3f6a95109789272a3c4f0663dbcdab908aa8f26 tool_conf.xml.main --- a/tool_conf.xml.main +++ b/tool_conf.xml.main @@ -326,6 +326,7 @@ <section name="NGS: RNA Analysis" id="ngs-rna-tools"><label text="RNA-seq" id="rna_seq" /><tool file="ngs_rna/tophat_wrapper.xml" /> + <tool file="ngs_rna/tophat2_wrapper.xml" /><tool file="ngs_rna/cufflinks_wrapper.xml" /><tool file="ngs_rna/cuffcompare_wrapper.xml" /><tool file="ngs_rna/cuffmerge_wrapper.xml" /> https://bitbucket.org/galaxy/galaxy-central/commits/b9a24a719716/ Changeset: b9a24a719716 User: jgoecks Date: 2013-08-06 17:02:37 Summary: Automated merge of next-stable branch Affected #: 2 files diff -r 61de03c05cf653aed0418adc98ae3cb6571f2a4e -r b9a24a719716150910de19eefd1189238c243255 tool_conf.xml.main --- a/tool_conf.xml.main +++ b/tool_conf.xml.main @@ -326,6 +326,7 @@ <section name="NGS: RNA Analysis" id="ngs-rna-tools"><label text="RNA-seq" id="rna_seq" /><tool file="ngs_rna/tophat_wrapper.xml" /> + <tool file="ngs_rna/tophat2_wrapper.xml" /><tool file="ngs_rna/cufflinks_wrapper.xml" /><tool file="ngs_rna/cuffcompare_wrapper.xml" /><tool file="ngs_rna/cuffmerge_wrapper.xml" /> diff -r 61de03c05cf653aed0418adc98ae3cb6571f2a4e -r b9a24a719716150910de19eefd1189238c243255 tools/ngs_rna/tophat_wrapper.xml --- a/tools/ngs_rna/tophat_wrapper.xml +++ b/tools/ngs_rna/tophat_wrapper.xml @@ -3,6 +3,8 @@ <description>Find splice junctions using RNA-seq data</description><version_command>tophat --version</version_command><requirements> + <requirement type="package">samtools</requirement> + <requirement type="package">bowtie</requirement><requirement type="package">tophat</requirement></requirements><command interpreter="python"> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.