Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 4e35ff04a116a4a9ca1d96e9b3c5842be9fa9f7f https://github.com/galaxyproject/galaxy/commit/4e35ff04a116a4a9ca1d96e9b3c58... Author: John Chilton <jmchilton@gmail.com> Date: 2015-10-05 (Mon, 05 Oct 2015) Changed paths: M lib/galaxy/jobs/command_factory.py Log Message: ----------- More improved file handling for job code. Another stab in the dark that won't actually fix the testing issues with Docker. Commit: b75175f18d15000a2dc5826f49424eba6dc7d489 https://github.com/galaxyproject/galaxy/commit/b75175f18d15000a2dc5826f49424... Author: John Chilton <jmchilton@gmail.com> Date: 2015-10-05 (Mon, 05 Oct 2015) Changed paths: M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/cli.py M lib/galaxy/jobs/runners/condor.py M lib/galaxy/jobs/runners/drmaa.py M lib/galaxy/jobs/runners/local.py M lib/galaxy/jobs/runners/pbs.py Log Message: ----------- Centralize logic for writing job scripts. Runners were using various permissions, some didn't close file handles, etc.... In addition, run sync after script is written to avoid "Text file busy" problems in all job script scenerios. Commit: 753bb9de0fa031720b8c7881ff1d52cbf6a522d3 https://github.com/galaxyproject/galaxy/commit/753bb9de0fa031720b8c7881ff1d5... Author: Martin Cech <cech.marten@gmail.com> Date: 2015-10-05 (Mon, 05 Oct 2015) Changed paths: M lib/galaxy/jobs/command_factory.py M lib/galaxy/jobs/runners/__init__.py M lib/galaxy/jobs/runners/cli.py M lib/galaxy/jobs/runners/condor.py M lib/galaxy/jobs/runners/drmaa.py M lib/galaxy/jobs/runners/local.py M lib/galaxy/jobs/runners/pbs.py Log Message: ----------- Merge pull request #839 from jmchilton/text_file_busy Attempt to fix "Text file busy" errors (testing and production) Compare: https://github.com/galaxyproject/galaxy/compare/bb43ace50927...753bb9de0fa0