Branch: refs/heads/reorg Home: https://github.com/galaxyproject/usegalaxy-playbook Commit: bd96bc4406cc67bc067eeffaf5af66f1f52ea11f https://github.com/galaxyproject/usegalaxy-playbook/commit/bd96bc4406cc67bc0... Author: Nate Coraor <nate@bx.psu.edu> Date: 2017-04-04 (Tue, 04 Apr 2017) Changed paths: R bootstrap-ansible.bash Log Message: ----------- Drop the bootstrap script Commit: ed83ee9d3c5d3062441fb28cf02cf50fa585f4c0 https://github.com/galaxyproject/usegalaxy-playbook/commit/ed83ee9d3c5d30624... Author: Nate Coraor <nate@bx.psu.edu> Date: 2017-04-06 (Thu, 06 Apr 2017) Changed paths: M common_roles M roles/galaxyprojectdotorg.galaxy/README.md M roles/galaxyprojectdotorg.galaxy/defaults/main.yml M roles/galaxyprojectdotorg.galaxy/files/makepyc.py M roles/galaxyprojectdotorg.galaxy/handlers/main.yml M roles/galaxyprojectdotorg.galaxy/meta/.galaxy_install_info M roles/galaxyprojectdotorg.galaxy/tasks/clone.yml M roles/galaxyprojectdotorg.galaxy/tasks/database.yml M roles/galaxyprojectdotorg.galaxy/tasks/dependencies.yml M roles/galaxyprojectdotorg.galaxy/tasks/download.yml M roles/galaxyprojectdotorg.galaxy/tasks/main.yml M roles/galaxyprojectdotorg.galaxy/tasks/mutable_setup.yml M roles/galaxyprojectdotorg.galaxy/tasks/static_setup.yml M roles/galaxyprojectdotorg.galaxy/tasks/virtualenv.yml M roles/galaxyprojectdotorg.nginx/README.md M roles/galaxyprojectdotorg.nginx/meta/.galaxy_install_info M roles/galaxyprojectdotorg.nginx/meta/main.yml M roles/galaxyprojectdotorg.nginx/tasks/main.yml A roles/galaxyprojectdotorg.nginx/tasks/pkgin.yml M roles/galaxyprojectdotorg.nginx/templates/epel-nginx.conf.j2 A roles/galaxyprojectdotorg.nginx/templates/pkgin-nginx.conf.j2 A roles/galaxyprojectdotorg.nginx/vars/pkgin.yml M roles/galaxyprojectdotorg.postgresql/files/get_repo_rpm_release.py M roles/galaxyprojectdotorg.postgresql/meta/.galaxy_install_info M roles/galaxyprojectdotorg.postgresql/tasks/main.yml M roles/galaxyprojectdotorg.postgresql/tasks/redhat.yml M roles/galaxyprojectdotorg.postgresql/templates/archive_wal.sh.j2 M roles/galaxyprojectdotorg.postgresql/templates/backup_working_wal.sh.j2 M roles/galaxyprojectdotorg.postgresql/templates/scheduled_backup.sh.j2 M roles/natefoo.postgresql_objects/README.md M roles/natefoo.postgresql_objects/meta/.galaxy_install_info M roles/natefoo.postgresql_objects/tasks/main.yml Log Message: ----------- Update roles Commit: 60df6e1d5c7879155576d7b98b880c9f74be94e6 https://github.com/galaxyproject/usegalaxy-playbook/commit/60df6e1d5c7879155... Author: Nate Coraor <nate@bx.psu.edu> Date: 2017-04-07 (Fri, 07 Apr 2017) Changed paths: M production/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample M production/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js M production/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako M production/files/interactive_environments/plugins/common/templates/ie.mako R production/files/interactive_environments/plugins/ethercalc/config/allowed_images.yml.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample R production/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml R production/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js R production/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako M production/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample M production/files/interactive_environments/plugins/jupyter/config/jupyter.xml M production/files/interactive_environments/plugins/jupyter/static/js/jupyter.js M production/files/interactive_environments/plugins/jupyter/templates/jupyter.mako M production/files/interactive_environments/plugins/neo/config/neo.ini.sample M production/files/interactive_environments/plugins/neo/static/js/neo.js M production/files/interactive_environments/plugins/neo/templates/neo.mako M production/files/interactive_environments/plugins/phinch/config/phinch.ini.sample M production/files/interactive_environments/plugins/phinch/static/js/phinch.js M production/files/interactive_environments/plugins/phinch/templates/phinch.mako M production/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample M production/files/interactive_environments/plugins/rstudio/static/js/rstudio.js M production/files/interactive_environments/plugins/rstudio/templates/rstudio.mako M production/files/interactive_environments/proxy/lib/mapper.js M roles/galaxyprojectdotorg.interactive_environments/meta/.galaxy_install_info M roles/galaxyprojectdotorg.interactive_environments/tasks/extract_component.yml M roles/galaxyprojectdotorg.interactive_environments/tasks/synchronize_components.yml Log Message: ----------- Merge branch 'master' of github.com:/galaxyproject/usegalaxy-playbook into reorg Commit: bad32b46a7af10c27f6e6889d10db1c58b8239c1 https://github.com/galaxyproject/usegalaxy-playbook/commit/bad32b46a7af10c27... Author: Nate Coraor <nate@bx.psu.edu> Date: 2017-04-12 (Wed, 12 Apr 2017) Changed paths: M README.md M ansible.cfg R common/host_vars/galaxy01.tacc.utexas.edu.yml R common/host_vars/galaxy05.tacc.utexas.edu.yml R common/host_vars/radegast.galaxyproject.org.yml M common/inventory M common_roles A env/common/_inc_restart.yml A env/common/_inc_snapshot.yml A env/common/_inc_static.yml A env/common/config.yml A env/common/files/galaxy/config/disposable_email_blacklist.conf A env/common/files/galaxy/config/pulsar_jetstream_actions.yml A env/common/files/galaxy/dynamic_rules/bridges_select.py A env/common/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/common/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/common/files/galaxy/dynamic_rules/reserved.py A env/common/files/galaxy/error/413/index.html A env/common/files/galaxy/error/502/index.shtml A env/common/files/galaxy/error/content_bg.png A env/common/files/galaxy/error/error_message_icon.png A env/common/files/galaxy/error/masthead_bg.png A env/common/files/galaxy/static/terms.html A env/common/files/galaxy/static/welcome_img/201511_France.png A env/common/files/galaxy/static/welcome_img/50PlusPublic.png A env/common/files/galaxy/static/welcome_img/60PlusOdometer1.png A env/common/files/galaxy/static/welcome_img/70PlusOdometer.png A env/common/files/galaxy/static/welcome_img/80PlusOdometer.png A env/common/files/galaxy/static/welcome_img/Ballaxy.png A env/common/files/galaxy/static/welcome_img/Barcelona_2015.png A env/common/files/galaxy/static/welcome_img/CARTGalaxy.png A env/common/files/galaxy/static/welcome_img/CPTGalaxy.png A env/common/files/galaxy/static/welcome_img/CoSSci.png A env/common/files/galaxy/static/welcome_img/EDGW2017.jpg A env/common/files/galaxy/static/welcome_img/ErasmusGalaxy.png A env/common/files/galaxy/static/welcome_img/EuropeFall2014.png A env/common/files/galaxy/static/welcome_img/EuropeFall2014_2.png A 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env/common/files/galaxy/static/welcome_img/GCUKisLive.png A env/common/files/galaxy/static/welcome_img/GTN.png A env/common/files/galaxy/static/welcome_img/GalaxEast.png A env/common/files/galaxy/static/welcome_img/GalaxyAdmins201502.png A env/common/files/galaxy/static/welcome_img/GalaxyBiostar.png A env/common/files/galaxy/static/welcome_img/GalaxyBiostarHelp.png A env/common/files/galaxy/static/welcome_img/GalaxyCast1.png A env/common/files/galaxy/static/welcome_img/GalaxyIFBDay2014.png A env/common/files/galaxy/static/welcome_img/GalaxyIsHiringCascade.png A env/common/files/galaxy/static/welcome_img/GalaxyQuest1.png A env/common/files/galaxy/static/welcome_img/ISMB2014.png A env/common/files/galaxy/static/welcome_img/ImmPortGalaxy.png A env/common/files/galaxy/static/welcome_img/LookingToLearn.png A env/common/files/galaxy/static/welcome_img/MBAC.png A env/common/files/galaxy/static/welcome_img/MPI-HLR-Galaxy.png A env/common/files/galaxy/static/welcome_img/MississippiGalaxy.png A 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env/common/files/ssl/incommon_chain.pem A env/common/files/ssl/radegast.galaxyproject.org_cert.pem A env/common/files/ssl/usegalaxy.org_cert.pem A env/common/files/ssl/wildcard_cert.pem A env/common/group_vars/sslservers/vars.yml A env/common/group_vars/sslservers/vault.yml A env/common/group_vars/toolsheddbservers.yml A env/common/group_vars/toolshedservers/common_vars.yml A env/common/group_vars/toolshedservers/common_vault.yml A env/common/group_vars/toolshedwebservers.yml A env/common/pulsar.yml A env/common/restart.yml A env/common/snapshot.yml A env/common/stack.yml A env/common/static.yml A env/common/templates/galaxy/config/reports.ini.j2 A env/common/templates/galaxy/static/welcome.html.j2 A env/common/templates/nginx/toolshed.j2 A env/common/templates/supervisor/galaxy.j2 A env/common/templates/supervisor/galaxy_datamanager.j2 A env/common/templates/supervisor/galaxy_gie_proxy.j2 A env/common/templates/supervisor/galaxy_group.j2 A env/common/templates/supervisor/galaxy_handler.j2 A env/common/templates/supervisor/galaxy_impersonate.j2 A env/common/templates/supervisor/galaxy_reports.j2 A env/common/templates/supervisor/toolshed.j2 A env/common/update.yml A env/common/update_shed.yml A env/test/_inc_config_post_tasks.yml A env/test/_inc_restart.yml A env/test/_inc_snapshot.yml A env/test/_inc_static.yml A env/test/config.yml A env/test/files/galaxy/config/builds.txt A env/test/files/galaxy/config/data_manager_conf.xml A env/test/files/galaxy/config/disposable_email_blacklist.conf A env/test/files/galaxy/config/job_metrics_conf.xml A env/test/files/galaxy/config/job_resource_params_conf.xml A env/test/files/galaxy/config/nagios_tool_conf.xml A env/test/files/galaxy/config/object_store_conf.xml A env/test/files/galaxy/config/pulsar_jetstream.yml A env/test/files/galaxy/config/pulsar_jetstream_actions.yml A env/test/files/galaxy/config/pulsar_stampede_actions.yml A env/test/files/galaxy/config/tool_conf.xml A env/test/files/galaxy/config/tool_data_table_conf.xml A env/test/files/galaxy/config/tool_sheds_conf.xml A env/test/files/galaxy/config/ucsc_build_sites.txt A env/test/files/galaxy/dynamic_rules/bridges_select.py A env/test/files/galaxy/dynamic_rules/jetstream.py A env/test/files/galaxy/dynamic_rules/multi_dynamic_walltime.py A env/test/files/galaxy/dynamic_rules/nvc_dynamic_memory.py A env/test/files/galaxy/dynamic_rules/reserved.py A env/test/files/galaxy/dynamic_rules/single_dynamic_memory.py A env/test/files/galaxy/error A env/test/files/galaxy/galaxy_version.yml A env/test/files/galaxy/nagios/echo_test_bridges.xml A env/test/files/galaxy/nagios/echo_test_cluster.xml A env/test/files/galaxy/nagios/echo_test_handler0.xml A env/test/files/galaxy/nagios/echo_test_handler1.xml A env/test/files/galaxy/nagios/echo_test_jetstream_iu.xml A env/test/files/galaxy/nagios/echo_test_jetstream_tacc.xml A env/test/files/galaxy/nagios/echo_test_stampede.xml A env/test/files/galaxy/static A env/test/files/galaxy/tool_list.yaml A env/test/files/galaxy/var/integrated_tool_panel.xml A env/test/files/galaxy/var/migrated_tools_conf.xml A env/test/files/galaxy/var/shed_data_manager_conf.xml A env/test/files/galaxy/var/shed_tool_conf.xml A env/test/files/galaxy/var/shed_tool_data_table_conf.xml A env/test/files/interactive_environments/plugins/.ansible_ie_role_current_version A env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.ini.sample A env/test/files/interactive_environments/plugins/bam_iobio/config/bam_iobio.xml A env/test/files/interactive_environments/plugins/bam_iobio/static/js/bam_iobio.js A env/test/files/interactive_environments/plugins/bam_iobio/templates/bam_iobio.mako A env/test/files/interactive_environments/plugins/common/templates/ie.mako A env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.ini.sample A env/test/files/interactive_environments/plugins/ethercalc/config/ethercalc.xml A env/test/files/interactive_environments/plugins/ethercalc/static/js/ethercalc.js A env/test/files/interactive_environments/plugins/ethercalc/templates/ethercalc.mako A env/test/files/interactive_environments/plugins/interactive_environments.dtd A env/test/files/interactive_environments/plugins/jupyter/config/allowed_images.yml.sample A env/test/files/interactive_environments/plugins/jupyter/config/jupyter.ini.sample A env/test/files/interactive_environments/plugins/jupyter/config/jupyter.xml A env/test/files/interactive_environments/plugins/jupyter/static/js/jupyter.js A env/test/files/interactive_environments/plugins/jupyter/templates/jupyter.mako A env/test/files/interactive_environments/plugins/neo/config/allowed_images.yml.sample A env/test/files/interactive_environments/plugins/neo/config/neo.ini.sample A env/test/files/interactive_environments/plugins/neo/config/neo.xml A env/test/files/interactive_environments/plugins/neo/static/js/neo.js A env/test/files/interactive_environments/plugins/neo/templates/neo.mako A env/test/files/interactive_environments/plugins/phinch/config/phinch.ini.sample A env/test/files/interactive_environments/plugins/phinch/config/phinch.xml A env/test/files/interactive_environments/plugins/phinch/static/js/phinch.js A env/test/files/interactive_environments/plugins/phinch/templates/phinch.mako A env/test/files/interactive_environments/plugins/rstudio/config/allowed_images.yml.sample A env/test/files/interactive_environments/plugins/rstudio/config/rstudio.ini.sample A env/test/files/interactive_environments/plugins/rstudio/config/rstudio.xml A env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/base64.js A env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/jsbn.js A env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/prng4.js A env/test/files/interactive_environments/plugins/rstudio/static/js/crypto/rng.js A 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env/test/group_vars/galaxyservers/vars.yml A env/test/group_vars/galaxyservers/vault.yml A env/test/group_vars/galaxyswarmmanagers/vars.yml A env/test/group_vars/galaxyswarmmanagers/vault.yml A env/test/group_vars/galaxywebservers.yml A env/test/group_vars/pulsarservers/vars.yml A env/test/group_vars/pulsarservers/vault.yml A env/test/group_vars/sslservers A env/test/group_vars/supervisorservers/vars.yml A env/test/group_vars/supervisorservers/vault.yml A env/test/group_vars/webservers/vars.yml A env/test/group_vars/webservers/vault.yml A env/test/host_vars/br005.bridges.psc.edu.yml A env/test/host_vars/galaxy07.tacc.utexas.edu.yml A env/test/host_vars/jetstream-iu0.galaxyproject.org.yml A env/test/host_vars/jetstream-tacc0.galaxyproject.org.yml A env/test/host_vars/login5.stampede.tacc.utexas.edu.yml A env/test/inventory A env/test/inventory.static A env/test/pulsar.yml A env/test/restart.yml A env/test/snapshot.yml A env/test/stack.yml A env/test/static.yml A 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stage/files/interactive_environments/proxy/lib/proxy.js R stage/files/interactive_environments/proxy/package.json R stage/galaxy_version.yml R stage/group_vars/all.yml R stage/group_vars/galaxydbservers.yml R stage/group_vars/galaxyservers.yml R stage/group_vars/pulsarservers.yml R stage/group_vars/toolsheddbservers.yml R stage/group_vars/toolshedservers.yml R stage/host_vars/br005.bridges.psc.edu.yml R stage/host_vars/galaxy01.tacc.utexas.edu.yml R stage/host_vars/jetstream-iu0.galaxyproject.org.yml R stage/host_vars/jetstream-tacc0.galaxyproject.org.yml R stage/host_vars/login5.stampede.tacc.utexas.edu.yml R stage/secret_vars/galaxydbservers.yml R stage/secret_vars/galaxyservers.yml R stage/secret_vars/pulsarservers.yml R templates/galaxy/test.galaxyproject.org/config/build_sites.yml.j2 R templates/galaxy/test.galaxyproject.org/config/job_conf.xml.j2 R templates/galaxy/test.galaxyproject.org/config/reports.ini.j2 R templates/galaxy/test.galaxyproject.org/config/uwsgi.ini.j2 R templates/galaxy/test.galaxyproject.org/static R templates/nginx/galaxy_main_installer.j2 R templates/nginx/galaxy_test.j2 R templates/nginx/tacc_protected.j2 R templates/nginx/testtoolshed.j2 R templates/nginx/toolshed.j2 R templates/supervisor/galaxy_datamanager.j2 R templates/supervisor/galaxy_installer.j2 R templates/supervisor/testtoolshed.j2 R templates/supervisor/toolshed.j2 R toolshed.yml Log Message: ----------- Reorganize and update playbook for complete redeployment of Test on to a new VM. The new VM was deployed entirely with infrastructure-playbook and this playbook. The Test Tool Shed was also reorganized due to the removal of `stage`. Coming soon: Main Commit: be93b172eb3ea3a4aa41e8a16b7027799a5d8533 https://github.com/galaxyproject/usegalaxy-playbook/commit/be93b172eb3ea3a4a... Author: Nate Coraor <nate@bx.psu.edu> Date: 2017-04-12 (Wed, 12 Apr 2017) Changed paths: M env/test/files/galaxy/galaxy_version.yml Log Message: ----------- Update Test Compare: https://github.com/galaxyproject/usegalaxy-playbook/compare/bd96bc4406cc^...be93b172eb3e