Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 55681f6e2a4f8f5772a3979961d94344d7a45e2e https://github.com/galaxyproject/galaxy/commit/55681f6e2a4f8f5772a3979961d94... Author: John Chilton <jmchilton@gmail.com> Date: 2017-06-11 (Sun, 11 Jun 2017) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/tools/deps/containers.py M lib/galaxy/tools/deps/docker_util.py Log Message: ----------- Improve default handling of Singularity volumes. My understanding is that unlike Docker, Singularity doesn't allow a subdirectory to be mounted rw and its parent to be mounted ro - it will just be ro. This PR adjusts the default volume handling for Singularity to intelligently fallback to mounting parent directories as rw if their child directories are listed as being mounted rw. Ping @bgruening - is the above a description correct and does this approach work for you? Commit: 74333164dbc304d69434495516db6af958780a93 https://github.com/galaxyproject/galaxy/commit/74333164dbc304d69434495516db6... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2017-06-12 (Mon, 12 Jun 2017) Changed paths: M lib/galaxy/tools/deps/containers.py Log Message: ----------- pep fixes Commit: f81c5bb1d957b37ebe8d80cbef49d4a8a1284b7f https://github.com/galaxyproject/galaxy/commit/f81c5bb1d957b37ebe8d80cbef49d... Author: Björn Grüning <bjoern@gruenings.eu> Date: 2017-06-12 (Mon, 12 Jun 2017) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/tools/deps/containers.py M lib/galaxy/tools/deps/docker_util.py Log Message: ----------- Merge pull request #4180 from jmchilton/singularity_volumes Improve default handling of Singularity volumes. Compare: https://github.com/galaxyproject/galaxy/compare/d36c4053cd16...f81c5bb1d957