1 new commit in galaxy-central:
https://bitbucket.org/galaxy/galaxy-central/changeset/7f78b2bf339f/ changeset: 7f78b2bf339f user: dan date: 2012-04-10 05:24:31 summary: Do not add hidden tools to the tool panel. affected #: 1 file
diff -r 0ffa2695e436501aa55546de6c4643743fe0d2f4 -r 7f78b2bf339f24f57b686e7c4bdb1fe301e8ed12 lib/galaxy/tools/__init__.py --- a/lib/galaxy/tools/__init__.py +++ b/lib/galaxy/tools/__init__.py @@ -490,52 +490,57 @@
def to_dict( self, trans, in_panel=True, trackster=False ):
- def filter_for_trackster( item ): + def filter_for_panel( item, filters ): """ Filters tool panel elements so that only those that are compatible - with Trackster are kept. + with provided filters are kept. """ - + def _apply_filter( filter_item, filter_list ): + for filter_method in filter_list: + if not filter_method( filter_item ): + return False + return True if isinstance( item, Tool ): - # If tool has a trackster config, it can be used in Trackster. - if tool.trackster_conf: + if _apply_filter( item, filters[ 'tool' ] ): return item elif isinstance( item, ToolSectionLabel ): - # Tool label cannot be directly filtered. - return item + if _apply_filter( item, filters[ 'label' ] ): + return item elif isinstance( item, ToolSection ): # Filter section item-by-item. Only show a label if there are - # trackster-compatible tools below it. - cur_label_key = None - tools_under_label = False - filtered_elems = item.elems.copy() - for key, section_item in item.elems.items(): - if isinstance( section_item, Tool ): - # Filter tool. - if section_item.trackster_conf: - tools_under_label = True - else: - del filtered_elems[ key ] - elif isinstance( section_item, ToolSectionLabel ): - # If there is a label and it does not have tools, - # remove it. - if cur_label_key and not tools_under_label: - del filtered_elems[ cur_label_key ] + # non-filtered tools below it. + + if _apply_filter( item, filters[ 'section' ] ): + cur_label_key = None + tools_under_label = False + filtered_elems = item.elems.copy() + for key, section_item in item.elems.items(): + if isinstance( section_item, Tool ): + # Filter tool. + if _apply_filter( section_item, filters[ 'tool' ] ): + tools_under_label = True + else: + del filtered_elems[ key ] + elif isinstance( section_item, ToolSectionLabel ): + # If there is a label and it does not have tools, + # remove it. + if ( cur_label_key and not tools_under_label ) or not _apply_filter( section_item, filters[ 'label' ] ): + del filtered_elems[ cur_label_key ]
- # Reset attributes for new label. - cur_label_key = key - tools_under_label = False - - - # Handle last label. - if cur_label_key and not tools_under_label: - del filtered_elems[ cur_label_key ] - - # Only return section if there are elements. - if len( filtered_elems ) != 0: - copy = item.copy() - copy.elems = filtered_elems - return copy + # Reset attributes for new label. + cur_label_key = key + tools_under_label = False + + + # Handle last label. + if cur_label_key and not tools_under_label: + del filtered_elems[ cur_label_key ] + + # Only return section if there are elements. + if len( filtered_elems ) != 0: + copy = item.copy() + copy.elems = filtered_elems + return copy
return None
@@ -547,13 +552,15 @@ panel_elts = [ val for val in self.tool_panel.itervalues() ]
# Filter if necessary. + filters = dict( tool=[ lambda x: not x._is_hidden_for_user( trans.user ) ], section=[], label=[] ) #hidden tools filter if trackster: - filtered_panel_elts = [] - for index, elt in enumerate( panel_elts ): - elt = filter_for_trackster( elt ) - if elt: - filtered_panel_elts.append( elt ) - panel_elts = filtered_panel_elts + filters[ 'tool' ].append( lambda x: x.trackster_conf ) # If tool has a trackster config, it can be used in Trackster. + filtered_panel_elts = [] + for index, elt in enumerate( panel_elts ): + elt = filter_for_panel( elt, filters ) + if elt: + filtered_panel_elts.append( elt ) + panel_elts = filtered_panel_elts
# Produce panel. rval = []
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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