[galaxy-commits] [galaxyproject/galaxy] d0a011: Enable lookup of tools from other tool sheds.

6 Dec 2015


      Branch: refs/heads/dev
  Home:   https://github.com/galaxyproject/galaxy
  Commit: d0a011675323ba7e8deba588ae0ae6ed9c23f0fe
      https://github.com/galaxyproject/galaxy/commit/d0a011675323ba7e8deba588ae0ae...
  Author: mvdbeek <m.vandenbeek@gmail.com>
  Date:   2015-12-05 (Sat, 05 Dec 2015)

  Changed paths:
    M lib/galaxy/tools/toolbox/base.py

  Log Message:
  -----------
  Enable lookup of tools from other tool sheds.


  Commit: c040a18b4b164e58a45d1c4f6da65f1eacf18ed5
      https://github.com/galaxyproject/galaxy/commit/c040a18b4b164e58a45d1c4f6da65...
  Author: mvdbeek <m.vandenbeek@gmail.com>
  Date:   2015-12-05 (Sat, 05 Dec 2015)

  Changed paths:
    M lib/galaxy/tools/toolbox/base.py

  Log Message:
  -----------
  Modify get_tool() directly instead of using decorator.


  Commit: 2d168a2c07798ab736676a1eb865ae6976b48464
      https://github.com/galaxyproject/galaxy/commit/2d168a2c07798ab736676a1eb865a...
  Author: mvdbeek <m.vandenbeek@gmail.com>
  Date:   2015-12-05 (Sat, 05 Dec 2015)

  Changed paths:
    M lib/galaxy/tools/toolbox/base.py

  Log Message:
  -----------
  Remove whitespaces in blank line.


  Commit: 1be4f85404c75be364cb20b3c460ea3f51c4dae2
      https://github.com/galaxyproject/galaxy/commit/1be4f85404c75be364cb20b3c460e...
  Author: Marius van den Beek <m.vandenbeek@gmail.com>
  Date:   2015-12-05 (Sat, 05 Dec 2015)

  Changed paths:
    M client/galaxy/scripts/mvc/tools/tools-form-base.js
    M lib/galaxy/managers/workflows.py
    M lib/galaxy/tools/__init__.py
    M lib/galaxy/workflow/modules.py
    M static/maps/mvc/tools/tools-form-base.js.map
    M static/scripts/mvc/tools/tools-form-base.js

  Log Message:
  -----------
  Add messages inform users of changes in the tool_id.


  Commit: 4f1359a0a6d703c8a40b6bb015e89d991d97570e
      https://github.com/galaxyproject/galaxy/commit/4f1359a0a6d703c8a40b6bb015e89...
  Author: Marius van den Beek <m.vandenbeek@gmail.com>
  Date:   2015-12-05 (Sat, 05 Dec 2015)

  Changed paths:
    M .gitignore
    A client/galaxy/scripts/apps/analysis.js
    A client/galaxy/scripts/apps/history-panel.js
    A client/galaxy/scripts/apps/login.js
    A client/galaxy/scripts/apps/tool-panel.js
    R client/galaxy/scripts/base.js
    R client/galaxy/scripts/galaxy-app-base.js
    R client/galaxy/scripts/galaxy.autocom_tagging.js
    R client/galaxy/scripts/galaxy.base.js
    R client/galaxy/scripts/galaxy.frame.js
    A client/galaxy/scripts/galaxy.js
    M client/galaxy/scripts/galaxy.library.js
    R client/galaxy/scripts/galaxy.masthead.js
    R client/galaxy/scripts/galaxy.menu.js
    M client/galaxy/scripts/galaxy.pages.js
    R client/galaxy/scripts/galaxy.panels.js
    R client/galaxy/scripts/galaxy.tools.js
    R client/galaxy/scripts/galaxy.ui.scrollPanel.js
    A client/galaxy/scripts/layout/masthead.js
    A client/galaxy/scripts/layout/menu.js
    A client/galaxy/scripts/layout/modal.js
    A client/galaxy/scripts/layout/page.js
    A client/galaxy/scripts/layout/panel.js
    A client/galaxy/scripts/layout/scratchbook.js
    R client/galaxy/scripts/libs/IE/IE7.js
    R client/galaxy/scripts/libs/IE/IE8.js
    R client/galaxy/scripts/libs/IE/blank.gif
    R client/galaxy/scripts/libs/IE/excanvas.js
    R client/galaxy/scripts/libs/IE/ie7-recalc.js
    A client/galaxy/scripts/libs/backbone.js
    R client/galaxy/scripts/libs/backbone/backbone.js
    M client/galaxy/scripts/libs/d3.js
    A client/galaxy/scripts/mvc/annotation.js
    R client/galaxy/scripts/mvc/annotations.js
    R client/galaxy/scripts/mvc/app/app-analysis.js
    R client/galaxy/scripts/mvc/app/app-login.js
    R client/galaxy/scripts/mvc/app/app-view.js
    M client/galaxy/scripts/mvc/base-mvc.js
    M client/galaxy/scripts/mvc/citation/citation-model.js
    M client/galaxy/scripts/mvc/collection/collection-model.js
    R client/galaxy/scripts/mvc/collection/collection-panel-edit.js
    R client/galaxy/scripts/mvc/collection/collection-panel.js
    A client/galaxy/scripts/mvc/collection/collection-view-edit.js
    A client/galaxy/scripts/mvc/collection/collection-view.js
    M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js
    R client/galaxy/scripts/mvc/data.js
    A client/galaxy/scripts/mvc/dataset/data.js
    M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js
    M client/galaxy/scripts/mvc/dataset/dataset-list.js
    M client/galaxy/scripts/mvc/dataset/dataset-model.js
    M client/galaxy/scripts/mvc/form/form-select-content.js
    M client/galaxy/scripts/mvc/grid/grid-view.js
    M client/galaxy/scripts/mvc/history/hda-model.js
    M client/galaxy/scripts/mvc/history/hdca-li-edit.js
    M client/galaxy/scripts/mvc/history/hdca-li.js
    M client/galaxy/scripts/mvc/history/history-content-model.js
    M client/galaxy/scripts/mvc/history/history-contents.js
    M client/galaxy/scripts/mvc/history/history-model.js
    R client/galaxy/scripts/mvc/history/history-panel-annotated.js
    R client/galaxy/scripts/mvc/history/history-panel-edit-current.js
    R client/galaxy/scripts/mvc/history/history-panel-edit.js
    R client/galaxy/scripts/mvc/history/history-panel.js
    A client/galaxy/scripts/mvc/history/history-view-annotated.js
    A client/galaxy/scripts/mvc/history/history-view-edit-current.js
    A client/galaxy/scripts/mvc/history/history-view-edit.js
    A client/galaxy/scripts/mvc/history/history-view.js
    M client/galaxy/scripts/mvc/history/multi-panel.js
    M client/galaxy/scripts/mvc/history/options-menu.js
    M client/galaxy/scripts/mvc/job/job-model.js
    M client/galaxy/scripts/mvc/library/library-dataset-view.js
    M client/galaxy/scripts/mvc/library/library-folder-view.js
    M client/galaxy/scripts/mvc/library/library-folderlist-view.js
    M client/galaxy/scripts/mvc/library/library-folderrow-view.js
    M client/galaxy/scripts/mvc/library/library-foldertoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-library-view.js
    M client/galaxy/scripts/mvc/library/library-librarylist-view.js
    M client/galaxy/scripts/mvc/library/library-libraryrow-view.js
    M client/galaxy/scripts/mvc/library/library-librarytoolbar-view.js
    M client/galaxy/scripts/mvc/library/library-model.js
    R client/galaxy/scripts/mvc/list/list-panel.js
    A client/galaxy/scripts/mvc/list/list-view.js
    A client/galaxy/scripts/mvc/tag.js
    R client/galaxy/scripts/mvc/tags.js
    A client/galaxy/scripts/mvc/tool/tools-form-base.js
    A client/galaxy/scripts/mvc/tool/tools-form-workflow.js
    A client/galaxy/scripts/mvc/tool/tools-form.js
    A client/galaxy/scripts/mvc/tool/tools-jobs.js
    A client/galaxy/scripts/mvc/tool/tools-template.js
    A client/galaxy/scripts/mvc/tool/tools.js
    R client/galaxy/scripts/mvc/tools.js
    R client/galaxy/scripts/mvc/tools/tools-form-base.js
    R client/galaxy/scripts/mvc/tools/tools-form-workflow.js
    R client/galaxy/scripts/mvc/tools/tools-form.js
    R client/galaxy/scripts/mvc/tools/tools-jobs.js
    R client/galaxy/scripts/mvc/tools/tools-template.js
    M client/galaxy/scripts/mvc/ui/ui-select-ftp.js
    M client/galaxy/scripts/mvc/ui/ui-select-library.js
    M client/galaxy/scripts/mvc/upload/upload-ftp.js
    M client/galaxy/scripts/mvc/upload/upload-view.js
    M client/galaxy/scripts/mvc/user/user-model.js
    M client/galaxy/scripts/mvc/visualization/visualization-model.js
    M client/galaxy/scripts/mvc/workflow/workflow-connector.js
    M client/galaxy/scripts/mvc/workflow/workflow-manager.js
    M client/galaxy/scripts/mvc/workflow/workflow-view-data.js
    M client/galaxy/scripts/mvc/workflow/workflow-view.js
    M client/galaxy/scripts/nls/ja/locale.js
    M client/galaxy/scripts/nls/locale.js
    M client/galaxy/scripts/nls/zh/locale.js
    A client/galaxy/scripts/onload.js
    A client/galaxy/scripts/polyfills.js
    R client/galaxy/scripts/rgenetics/checkbox_and_radiobutton.js
    R client/galaxy/scripts/rgenetics/helper_functions.js
    R client/galaxy/scripts/rgenetics/timer.js
    M client/galaxy/scripts/templates/compiled/panel_section.js
    M client/galaxy/scripts/templates/compiled/tool_form.js
    M client/galaxy/scripts/templates/compiled/tool_link.js
    M client/galaxy/scripts/templates/compiled/tool_search.js
    R client/galaxy/scripts/tools/rgenetics/checkbox_and_radiobutton.js
    R client/galaxy/scripts/tools/rgenetics/helper_functions.js
    R client/galaxy/scripts/tools/rgenetics/timer.js
    A client/galaxy/scripts/ui/autocom_tagging.js
    A client/galaxy/scripts/ui/editable-text.js
    A client/galaxy/scripts/ui/popupmenu.js
    A client/galaxy/scripts/ui/scroll-panel.js
    A client/galaxy/scripts/utils/async-save-text.js
    M client/galaxy/scripts/utils/localization.js
    M client/galaxy/scripts/utils/query-string-parsing.js
    M client/galaxy/scripts/utils/utils.js
    M client/galaxy/scripts/viz/circster.js
    M client/galaxy/scripts/viz/phyloviz.js
    M client/galaxy/scripts/viz/sweepster.js
    M client/galaxy/scripts/viz/trackster.js
    M client/galaxy/scripts/viz/trackster/tracks.js
    M client/galaxy/scripts/viz/trackster/util.js
    M client/galaxy/scripts/viz/visualization.js
    M client/galaxy/style/less/base.less
    M client/grunt-tasks/install-libs.js
    M client/grunt-tasks/scripts.js
    M client/grunt-tasks/templates.js
    M client/package.json
    A client/webpack.config.js
    A config/dependency_resolvers_conf.xml.sample
    M config/galaxy.ini.sample
    M lib/galaxy/config.py
    M lib/galaxy/datatypes/interval.py
    M lib/galaxy/jobs/runners/pulsar.py
    M lib/galaxy/managers/configuration.py
    M lib/galaxy/managers/users.py
    M lib/galaxy/model/__init__.py
    M lib/galaxy/tools/__init__.py
    M lib/galaxy/tools/deps/resolvers/modules.py
    M lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py
    M lib/galaxy/web/base/controller.py
    M lib/galaxy/web/framework/webapp.py
    M lib/galaxy/webapps/galaxy/buildapp.py
    M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py
    M lib/galaxy/webapps/galaxy/controllers/root.py
    M lib/tool_shed/galaxy_install/migrate/check.py
    M run_tests.sh
    A static/incompatible-browser.html
    R static/maps/base.js.map
    R static/maps/galaxy-app-base.js.map
    R static/maps/galaxy.autocom_tagging.js.map
    R static/maps/galaxy.base.js.map
    R static/maps/galaxy.frame.js.map
    A static/maps/galaxy.js.map
    M static/maps/galaxy.library.js.map
    R static/maps/galaxy.masthead.js.map
    R static/maps/galaxy.menu.js.map
    M static/maps/galaxy.pages.js.map
    R static/maps/galaxy.panels.js.map
    R static/maps/galaxy.tools.js.map
    R static/maps/galaxy.ui.scrollPanel.js.map
    R static/maps/galaxy.workflows.js.map
    A static/maps/layout/masthead.js.map
    A static/maps/layout/menu.js.map
    A static/maps/layout/modal.js.map
    A static/maps/layout/page.js.map
    A static/maps/layout/panel.js.map
    A static/maps/layout/scratchbook.js.map
    R static/maps/libs/IE/IE7.js.map
    R static/maps/libs/IE/IE8.js.map
    R static/maps/libs/IE/excanvas.js.map
    R static/maps/libs/IE/ie7-recalc.js.map
    A static/maps/libs/backbone.js.map
    A static/maps/libs/common-libs.js.map
    A static/maps/mvc/annotation.js.map
    R static/maps/mvc/annotations.js.map
    R static/maps/mvc/app/app-analysis.js.map
    R static/maps/mvc/app/app-login.js.map
    R static/maps/mvc/app/app-view.js.map
    M static/maps/mvc/base-mvc.js.map
    M static/maps/mvc/citation/citation-model.js.map
    M static/maps/mvc/collection/collection-model.js.map
    R static/maps/mvc/collection/collection-panel-edit.js.map
    R static/maps/mvc/collection/collection-panel.js.map
    A static/maps/mvc/collection/collection-view-edit.js.map
    A static/maps/mvc/collection/collection-view.js.map
    M static/maps/mvc/collection/list-of-pairs-collection-creator.js.map
    R static/maps/mvc/data.js.map
    A static/maps/mvc/dataset/data.js.map
    M static/maps/mvc/dataset/dataset-li-edit.js.map
    M static/maps/mvc/dataset/dataset-list.js.map
    M static/maps/mvc/dataset/dataset-model.js.map
    M static/maps/mvc/form/form-select-content.js.map
    M static/maps/mvc/grid/grid-view.js.map
    M static/maps/mvc/history/hdca-li-edit.js.map
    M static/maps/mvc/history/hdca-li.js.map
    M static/maps/mvc/history/history-content-model.js.map
    M static/maps/mvc/history/history-contents.js.map
    M static/maps/mvc/history/history-model.js.map
    R static/maps/mvc/history/history-panel-annotated.js.map
    R static/maps/mvc/history/history-panel-edit-current.js.map
    R static/maps/mvc/history/history-panel-edit.js.map
    R static/maps/mvc/history/history-panel.js.map
    A static/maps/mvc/history/history-view-annotated.js.map
    A static/maps/mvc/history/history-view-edit-current.js.map
    A static/maps/mvc/history/history-view-edit.js.map
    A static/maps/mvc/history/history-view.js.map
    M static/maps/mvc/history/multi-panel.js.map
    M static/maps/mvc/history/options-menu.js.map
    M static/maps/mvc/job/job-model.js.map
    M static/maps/mvc/library/library-dataset-view.js.map
    M static/maps/mvc/library/library-folder-view.js.map
    M static/maps/mvc/library/library-foldertoolbar-view.js.map
    M static/maps/mvc/library/library-library-view.js.map
    M static/maps/mvc/library/library-librarytoolbar-view.js.map
    M static/maps/mvc/library/library-model.js.map
    A static/maps/mvc/list/list-view.js.map
    A static/maps/mvc/tag.js.map
    R static/maps/mvc/tags.js.map
    A static/maps/mvc/tool/tools-form-base.js.map
    A static/maps/mvc/tool/tools-form-workflow.js.map
    A static/maps/mvc/tool/tools-form.js.map
    A static/maps/mvc/tool/tools-jobs.js.map
    A static/maps/mvc/tool/tools-template.js.map
    A static/maps/mvc/tool/tools.js.map
    R static/maps/mvc/tools/tools-form-workflow.js.map
    R static/maps/mvc/tools/tools-form.js.map
    R static/maps/mvc/tools/tools-jobs.js.map
    R static/maps/mvc/tools/tools-template.js.map
    M static/maps/mvc/ui/ui-select-ftp.js.map
    M static/maps/mvc/ui/ui-select-library.js.map
    M static/maps/mvc/upload/upload-ftp.js.map
    M static/maps/mvc/upload/upload-view.js.map
    M static/maps/mvc/user/user-model.js.map
    M static/maps/mvc/visualization/visualization-model.js.map
    M static/maps/mvc/workflow/workflow-connector.js.map
    M static/maps/mvc/workflow/workflow-manager.js.map
    M static/maps/mvc/workflow/workflow-view-data.js.map
    M static/maps/mvc/workflow/workflow-view.js.map
    A static/maps/onload.js.map
    A static/maps/polyfills.js.map
    R static/maps/rgenetics/checkbox_and_radiobutton.js.map
    R static/maps/rgenetics/helper_functions.js.map
    R static/maps/rgenetics/timer.js.map
    M static/maps/templates/compiled/panel_section.js.map
    M static/maps/templates/compiled/tool_form.js.map
    M static/maps/templates/compiled/tool_link.js.map
    M static/maps/templates/compiled/tool_search.js.map
    R static/maps/tools/rgenetics/checkbox_and_radiobutton.js.map
    R static/maps/tools/rgenetics/helper_functions.js.map
    R static/maps/tools/rgenetics/timer.js.map
    A static/maps/ui/autocom_tagging.js.map
    A static/maps/ui/editable-text.js.map
    A static/maps/ui/popupmenu.js.map
    A static/maps/ui/scroll-panel.js.map
    A static/maps/utils/async-save-text.js.map
    M static/maps/utils/localization.js.map
    M static/maps/utils/query-string-parsing.js.map
    M static/maps/utils/utils.js.map
    M static/maps/viz/circster.js.map
    M static/maps/viz/phyloviz.js.map
    M static/maps/viz/sweepster.js.map
    M static/maps/viz/trackster.js.map
    M static/maps/viz/trackster/tracks.js.map
    M static/maps/viz/trackster/util.js.map
    M static/maps/viz/visualization.js.map
    R static/scripts/base.js
    A static/scripts/bundled/analysis.bundled.js
    A static/scripts/bundled/analysis.bundled.js.map
    A static/scripts/bundled/libs.bundled.js
    A static/scripts/bundled/libs.bundled.js.map
    A static/scripts/bundled/login.bundled.js
    A static/scripts/bundled/login.bundled.js.map
    R static/scripts/galaxy-app-base.js
    R static/scripts/galaxy.autocom_tagging.js
    R static/scripts/galaxy.base.js
    R static/scripts/galaxy.frame.js
    A static/scripts/galaxy.js
    M static/scripts/galaxy.library.js
    R static/scripts/galaxy.masthead.js
    R static/scripts/galaxy.menu.js
    M static/scripts/galaxy.pages.js
    R static/scripts/galaxy.panels.js
    R static/scripts/galaxy.tools.js
    R static/scripts/galaxy.ui.scrollPanel.js
    R static/scripts/galaxy.workflows.js
    A static/scripts/layout/masthead.js
    A static/scripts/layout/menu.js
    A static/scripts/layout/modal.js
    A static/scripts/layout/page.js
    A static/scripts/layout/panel.js
    A static/scripts/layout/scratchbook.js
    R static/scripts/libs/IE/IE7.js
    R static/scripts/libs/IE/IE8.js
    R static/scripts/libs/IE/blank.gif
    R static/scripts/libs/IE/excanvas.js
    R static/scripts/libs/IE/ie7-recalc.js
    A static/scripts/libs/backbone.js
    A static/scripts/libs/common-libs.js
    A static/scripts/mvc/annotation.js
    R static/scripts/mvc/annotations.js
    R static/scripts/mvc/app/app-analysis.js
    R static/scripts/mvc/app/app-login.js
    R static/scripts/mvc/app/app-view.js
    M static/scripts/mvc/base-mvc.js
    M static/scripts/mvc/citation/citation-model.js
    M static/scripts/mvc/collection/collection-model.js
    R static/scripts/mvc/collection/collection-panel-edit.js
    R static/scripts/mvc/collection/collection-panel.js
    A static/scripts/mvc/collection/collection-view-edit.js
    A static/scripts/mvc/collection/collection-view.js
    M static/scripts/mvc/collection/list-of-pairs-collection-creator.js
    R static/scripts/mvc/data.js
    A static/scripts/mvc/dataset/data.js
    M static/scripts/mvc/dataset/dataset-li-edit.js
    M static/scripts/mvc/dataset/dataset-list.js
    M static/scripts/mvc/dataset/dataset-model.js
    M static/scripts/mvc/form/form-select-content.js
    M static/scripts/mvc/history/hdca-li-edit.js
    M static/scripts/mvc/history/hdca-li.js
    M static/scripts/mvc/history/history-content-model.js
    M static/scripts/mvc/history/history-contents.js
    M static/scripts/mvc/history/history-model.js
    R static/scripts/mvc/history/history-panel-annotated.js
    R static/scripts/mvc/history/history-panel-edit-current.js
    R static/scripts/mvc/history/history-panel-edit.js
    A static/scripts/mvc/history/history-view-annotated.js
    A static/scripts/mvc/history/history-view-edit-current.js
    A static/scripts/mvc/history/history-view-edit.js
    A static/scripts/mvc/history/history-view.js
    M static/scripts/mvc/history/multi-panel.js
    M static/scripts/mvc/history/options-menu.js
    M static/scripts/mvc/job/job-model.js
    M static/scripts/mvc/library/library-dataset-view.js
    M static/scripts/mvc/library/library-folder-view.js
    M static/scripts/mvc/library/library-folderlist-view.js
    M static/scripts/mvc/library/library-folderrow-view.js
    M static/scripts/mvc/library/library-foldertoolbar-view.js
    M static/scripts/mvc/library/library-library-view.js
    M static/scripts/mvc/library/library-librarylist-view.js
    M static/scripts/mvc/library/library-libraryrow-view.js
    M static/scripts/mvc/library/library-librarytoolbar-view.js
    M static/scripts/mvc/library/library-model.js
    R static/scripts/mvc/list/list-panel.js
    A static/scripts/mvc/list/list-view.js
    A static/scripts/mvc/tag.js
    R static/scripts/mvc/tags.js
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    A static/scripts/mvc/tool/tools-template.js
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    R static/scripts/mvc/tools/tools-form.js
    R static/scripts/mvc/tools/tools-jobs.js
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    M static/scripts/mvc/ui/ui-select-ftp.js
    M static/scripts/mvc/ui/ui-select-library.js
    M static/scripts/mvc/upload/upload-ftp.js
    M static/scripts/mvc/upload/upload-view.js
    M static/scripts/mvc/user/user-model.js
    M static/scripts/mvc/visualization/visualization-model.js
    M static/scripts/mvc/workflow/workflow-connector.js
    M static/scripts/mvc/workflow/workflow-manager.js
    M static/scripts/mvc/workflow/workflow-view-data.js
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    R static/scripts/rgenetics/helper_functions.js
    R static/scripts/rgenetics/timer.js
    M static/scripts/templates/compiled/panel_section.js
    M static/scripts/templates/compiled/tool_form.js
    M static/scripts/templates/compiled/tool_link.js
    M static/scripts/templates/compiled/tool_search.js
    R static/scripts/tools/rgenetics/checkbox_and_radiobutton.js
    R static/scripts/tools/rgenetics/helper_functions.js
    R static/scripts/tools/rgenetics/timer.js
    A static/scripts/ui/autocom_tagging.js
    A static/scripts/ui/editable-text.js
    A static/scripts/ui/popupmenu.js
    A static/scripts/ui/scroll-panel.js
    A static/scripts/utils/async-save-text.js
    M static/scripts/utils/localization.js
    M static/scripts/utils/query-string-parsing.js
    M static/scripts/utils/utils.js
    M static/scripts/viz/circster.js
    M static/scripts/viz/phyloviz.js
    M static/scripts/viz/sweepster.js
    M static/scripts/viz/trackster.js
    M static/scripts/viz/trackster/tracks.js
    M static/scripts/viz/trackster/util.js
    M static/scripts/viz/visualization.js
    M static/style/blue/base.css
    R static/style/blue/galaxy.frame.masthead.css
    M templates/base.mako
    M templates/base/base_panels.mako
    M templates/display_base.mako
    M templates/galaxy_client_app.mako
    M templates/grid_base.mako
    A templates/js-app.mako
    M templates/refresh_frames.mako
    M templates/tagging_common.mako
    M templates/user/logout.mako
    M templates/webapps/galaxy/dataset/display.mako
    M templates/webapps/galaxy/dataset/edit_attributes.mako
    M templates/webapps/galaxy/dataset/tabular_chunked.mako
    M templates/webapps/galaxy/galaxy.masthead.mako
    M templates/webapps/galaxy/galaxy.panels.mako
    M templates/webapps/galaxy/history/display.mako
    M templates/webapps/galaxy/history/embed.mako
    M templates/webapps/galaxy/history/view.mako
    M templates/webapps/galaxy/history/view_multiple.mako
    M templates/webapps/galaxy/library/common/ldda_edit_info.mako
    M templates/webapps/galaxy/library/common/move_library_item.mako
    M templates/webapps/galaxy/library/common/upload.mako
    M templates/webapps/galaxy/page/editor.mako
    M templates/webapps/galaxy/requests/common/create_request.mako
    M templates/webapps/galaxy/requests/common/find_samples.mako
    R templates/webapps/galaxy/root/index.mako
    M templates/webapps/galaxy/visualization/display.mako
    M templates/webapps/galaxy/visualization/display_in_frame.mako
    M templates/webapps/galaxy/visualization/sweepster.mako
    M templates/webapps/galaxy/workflow/editor.mako
    M templates/webapps/galaxy/workflow/run.mako
    M test/api/helpers.py
    M test/api/test_jobs.py
    M test/base/twilltestcase.py
    M test/casperjs/api-history-permission-tests.js
    M test/casperjs/spaceghost.js
    M test/qunit/test-app.js
    M test/qunit/test-common.js
    M test/qunit/test-data/bootstrapped.js
    M test/qunit/tests/galaxy-app-base.js
    M test/qunit/tests/workflow_editor_tests.js
    M test/tool_shed/test_data/1440_files/complex_dependency/tool_dependencies.xml

  Log Message:
  -----------
  Merge branch 'dev' of github.com:galaxyproject/galaxy into cross_toolshed_tool_fetching


  Commit: 77f034019b93bdd539a495a89318bcb1e51b3993
      https://github.com/galaxyproject/galaxy/commit/77f034019b93bdd539a495a89318b...
  Author: Marius van den Beek <m.vandenbeek@gmail.com>
  Date:   2015-12-05 (Sat, 05 Dec 2015)

  Changed paths:
    M lib/galaxy/managers/workflows.py

  Log Message:
  -----------
  Fix failing api test


  Commit: 3a023f4cae6b9b6b25c1d389b9ba2ad7223cb24a
      https://github.com/galaxyproject/galaxy/commit/3a023f4cae6b9b6b25c1d389b9ba2...
  Author: John Chilton <jmchilton@gmail.com>
  Date:   2015-12-06 (Sun, 06 Dec 2015)

  Changed paths:
    M client/galaxy/scripts/mvc/tool/tools-form-base.js
    M lib/galaxy/managers/workflows.py
    M lib/galaxy/tools/__init__.py
    M lib/galaxy/tools/toolbox/base.py
    M lib/galaxy/workflow/modules.py
    M static/maps/mvc/tools/tools-form-base.js.map
    M static/scripts/mvc/tools/tools-form-base.js

  Log Message:
  -----------
  Merge pull request #818 from mvdbeek/cross_toolshed_tool_fetching

Look up installed tools from different toolshed(s)


Compare: https://github.com/galaxyproject/galaxy/compare/4fe36f8d6a15...3a023f4cae6b

[galaxy-commits] [galaxyproject/galaxy] d0a011: Enable lookup of tools from other tool sheds.

GitHub