1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/0094ba8f1c0a/ changeset: r5497:0094ba8f1c0a user: jgoecks date: 2011-05-03 16:31:14 summary: Add unspecified build validators to dataset inputs for Cufflinks/compare/diff wrappers. affected #: 3 files (545 bytes)
--- a/tools/ngs_rna/cuffcompare_wrapper.xml Tue May 03 09:45:40 2011 -0400 +++ b/tools/ngs_rna/cuffcompare_wrapper.xml Tue May 03 10:31:14 2011 -0400 @@ -33,9 +33,13 @@ #end for </command><inputs> - <param format="gtf" name="first_input" type="data" label="GTF file produced by Cufflinks" help=""/> + <param format="gtf" name="first_input" type="data" label="GTF file produced by Cufflinks" help=""> + <validator type="unspecified_build" /> + </param><repeat name="input_files" title="Additional GTF Input Files"> - <param format="gtf" name="additional_input" type="data" label="GTF file produced by Cufflinks" help=""/> + <param format="gtf" name="additional_input" type="data" label="GTF file produced by Cufflinks" help=""> + <validator type="unspecified_build" /> + </param></repeat><conditional name="annotation"><param name="use_ref_annotation" type="select" label="Use Reference Annotation">
--- a/tools/ngs_rna/cuffdiff_wrapper.xml Tue May 03 09:45:40 2011 -0400 +++ b/tools/ngs_rna/cuffdiff_wrapper.xml Tue May 03 10:31:14 2011 -0400 @@ -68,7 +68,9 @@
</command><inputs> - <param format="gtf" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/> + <param format="gtf" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."> + <validator type="unspecified_build" /> + </param><conditional name="group_analysis"><param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group."><option value="No">No</option> @@ -78,13 +80,19 @@ <repeat name="groups" title="Group"><param name="group" title="Group name" type="text" label="Group name (no spaces or commas)"/><repeat name="files" title="Replicate"> - <param name="file" label="Add file" type="data" format="sam,bam"/> + <param name="file" label="Add file" type="data" format="sam,bam"> + <validator type="unspecified_build" /> + </param></repeat></repeat></when><when value="No"> - <param format="sam,bam" name="aligned_reads1" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""/> - <param format="sam,bam" name="aligned_reads2" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""/> + <param format="sam,bam" name="aligned_reads1" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""> + <validator type="unspecified_build" /> + </param> + <param format="sam,bam" name="aligned_reads2" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""> + <validator type="unspecified_build" /> + </param></when></conditional>
--- a/tools/ngs_rna/cufflinks_wrapper.xml Tue May 03 09:45:40 2011 -0400 +++ b/tools/ngs_rna/cufflinks_wrapper.xml Tue May 03 10:31:14 2011 -0400 @@ -41,7 +41,9 @@ #end if </command><inputs> - <param format="sam,bam" name="input" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""/> + <param format="sam,bam" name="input" type="data" label="SAM or BAM file of aligned RNA-Seq reads" help=""> + <validator type="unspecified_build" /> + </param><param name="max_intron_len" type="integer" value="300000" min="1" max="600000" label="Max Intron Length" help=""/><param name="min_isoform_fraction" type="float" value="0.05" min="0" max="1" label="Min Isoform Fraction" help=""/><param name="pre_mrna_fraction" type="float" value="0.05" min="0" max="1" label="Pre MRNA Fraction" help=""/>
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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