1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/5aef59e68411/ Changeset: 5aef59e68411 User: greg Date: 2013-10-01 20:31:40 Summary: (1) enhance the 'Manage installed tool shed repositories' grid to mark repositories that contain exported workflows, (2) Set the tool_shed_status column value when installing a new repository or reinstalling an uninstalled repository, (3) On the 'Manage installed tool shed repositories' gird, display installed repositories ordered by tool_shed, name, owner, ctx_rev. Affected #: 2 files

diff -r da46b521540df29f936aa51cd03e75068eff1204 -r 5aef59e6841170aa6e21794d78f709b17738595e lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py --- a/lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py +++ b/lib/tool_shed/galaxy_install/grids/admin_toolshed_grids.py @@ -15,6 +15,13 @@ deprecated_tip_str = '' return '<img src="/static/images/icon_error_sml.gif" %s/>' % deprecated_tip_str

+def generate_includes_workflows_img_str( include_mouse_over=False ): + if include_mouse_over: + deprecated_tip_str = 'class="icon-button" title="This repository contains exported workflows"' + else: + deprecated_tip_str = '' + return '<img src="/static/images/fugue/gear.png" %s/>' % deprecated_tip_str + def generate_latest_revision_img_str( include_mouse_over=False ): if include_mouse_over: latest_revision_tip_str = 'class="icon-button" title="This is the latest installable revision of this repository"' @@ -60,6 +67,8 @@ tool_shed_status_str += generate_revision_updates_img_str( include_mouse_over=True ) if tool_shed_repository.upgrade_available: tool_shed_status_str += generate_revision_upgrades_img_str( include_mouse_over=True ) + if tool_shed_repository.includes_workflows: + tool_shed_status_str += generate_includes_workflows_img_str( include_mouse_over=True ) else: tool_shed_status_str = generate_unknown_img_str( include_mouse_over=True ) return tool_shed_status_str @@ -211,7 +220,11 @@ use_paging = False

def build_initial_query( self, trans, **kwd ): - return trans.sa_session.query( self.model_class ) + return trans.sa_session.query( self.model_class ) \ + .order_by( self.model_class.table.c.tool_shed, + self.model_class.table.c.name, + self.model_class.table.c.owner, + self.model_class.table.c.ctx_rev )

@property def legend( self ): @@ -219,6 +232,7 @@ legend_str += '%s&nbsp;&nbsp;A newer installable revision is available for this repository<br/>' % generate_revision_upgrades_img_str() legend_str += '%s&nbsp;&nbsp;This is the latest installable revision of this repository<br/>' % generate_latest_revision_img_str() legend_str += '%s&nbsp;&nbsp;This repository is deprecated in the Tool Shed<br/>' % generate_deprecated_repository_img_str() + legend_str += '%s&nbsp;&nbsp;This repository contains exported workflows<br/>' % generate_includes_workflows_img_str() legend_str += '%s&nbsp;&nbsp;Unable to get information from the Tool Shed<br/>' % generate_unknown_img_str() return legend_str

diff -r da46b521540df29f936aa51cd03e75068eff1204 -r 5aef59e6841170aa6e21794d78f709b17738595e lib/tool_shed/galaxy_install/repository_util.py --- a/lib/tool_shed/galaxy_install/repository_util.py +++ b/lib/tool_shed/galaxy_install/repository_util.py @@ -352,6 +352,10 @@ updating_installed_repository=False, persist=True ) tool_shed_repository.metadata = metadata_dict + # Update the tool_shed_repository.tool_shed_status column in the database. + tool_shed_status_dict = suc.get_tool_shed_status_for_installed_repository( trans.app, tool_shed_repository ) + if tool_shed_status_dict: + tool_shed_repository.tool_shed_status = tool_shed_status_dict trans.sa_session.add( tool_shed_repository ) trans.sa_session.flush() if 'tool_dependencies' in metadata_dict and not reinstalling:

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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