1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/4d1e525e1594/ changeset: 4d1e525e1594 user: dan date: 2011-10-25 19:51:56 summary: Allow picard_SamToFastq to use input BAM files. affected #: 1 file diff -r 5ed5bcad57015ab0b412dcc2648cbfbf1e11bf9e -r 4d1e525e1594a63221c099c5f84ca5765775533b tools/picard/picard_SamToFastq.xml --- a/tools/picard/picard_SamToFastq.xml +++ b/tools/picard/picard_SamToFastq.xml @@ -42,11 +42,11 @@ || echo "Error running SamToFastq" >&2 </command><inputs> - <param name="input_sam" type="data" format="sam" label="SAM file" /> + <param name="input_sam" type="data" format="sam,bam" label="BAM/SAM file" /><param name="read1_trim" type="integer" value="" optional="True" label="The number of bases to trim from the beginning of read 1." /><param name="read1_max_bases_to_write" type="integer" optional="True" value="" label="The maximum number of bases to write from read 1 after trimming." /><param name="output_per_read_group_selector" type="select" label="Output per read group"> - <option value="per_sam_file" selected="True">Per SAM file</option> + <option value="per_sam_file" selected="True">Per BAM/SAM file</option><!-- <option value="per_read_group">Per Read Group</option> --><validator type="expression" message="Per Read Group selection is not yet implemented">value == 'per_sam_file'</validator></param> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.