1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/843fdc5e0ebd/ changeset: 843fdc5e0ebd user: dan date: 2011-11-21 23:12:07 summary: Updates for GenomeSpace file browser importer. affected #: 3 files diff -r 52ce5e6950b7e599b6da104ca5b094df00ea4d26 -r 843fdc5e0ebdc2eafcf97b64c8191b5564ea1836 tool_conf.xml.sample --- a/tool_conf.xml.sample +++ b/tool_conf.xml.sample @@ -26,7 +26,9 @@ <tool file="data_source/epigraph_import.xml" /><tool file="data_source/epigraph_import_test.xml" /><tool file="data_source/hbvar.xml" /> - <tool file="data_source/genomespace_file_browser_dev.xml" /> + <tool file="data_source/genomespace_file_browser_prod.xml" /> + <!-- <tool file="data_source/genomespace_file_browser_test.xml" /> + <tool file="data_source/genomespace_file_browser_dev.xml" /> --><tool file="validation/fix_errors.xml" /></section><section name="Send Data" id="send"> diff -r 52ce5e6950b7e599b6da104ca5b094df00ea4d26 -r 843fdc5e0ebdc2eafcf97b64c8191b5564ea1836 tools/data_source/genomespace_file_browser_prod.xml --- /dev/null +++ b/tools/data_source/genomespace_file_browser_prod.xml @@ -0,0 +1,15 @@ +<?xml version="1.0"?> +<tool name="GenomeSpace import" id="genomespace_file_browser_prod" tool_type="data_source" add_galaxy_url="False" force_history_refresh="True" version="0.0.1"> + <description>from file browser</description> + <command interpreter="python">genomespace_file_browser.py --json_parameter_file "${output}" --genomespace_site "prod"</command> + <inputs action="https://dm.genomespace.org/datamanager/defaultdirectory" check_values="False" method="post"> + <display>go to GenomeSpace Data Manager </display> + <param name="appCallbackUrl" type="baseurl" value="/tool_runner?tool_id=genomespace_file_browser_dev&runtool_btn=Execute" /> + <param name="appName" type="hidden" value="Galaxy" /> + </inputs> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="auto" /> + </outputs> + <options sanitize="False" refresh="True"/> +</tool> diff -r 52ce5e6950b7e599b6da104ca5b094df00ea4d26 -r 843fdc5e0ebdc2eafcf97b64c8191b5564ea1836 tools/data_source/genomespace_file_browser_test.xml --- /dev/null +++ b/tools/data_source/genomespace_file_browser_test.xml @@ -0,0 +1,15 @@ +<?xml version="1.0"?> +<tool name="GenomeSpace import" id="genomespace_file_browser_test" tool_type="data_source" add_galaxy_url="False" force_history_refresh="True" version="0.0.1"> + <description>from file browser (test)</description> + <command interpreter="python">genomespace_file_browser.py --json_parameter_file "${output}" --genomespace_site "test"</command> + <inputs action="https://dmtest.genomespace.org:8444/datamanager/defaultdirectory" check_values="False" method="post"> + <display>go to GenomeSpace Data Manager </display> + <param name="appCallbackUrl" type="baseurl" value="/tool_runner?tool_id=genomespace_file_browser_dev&runtool_btn=Execute" /> + <param name="appName" type="hidden" value="Galaxy" /> + </inputs> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="auto" /> + </outputs> + <options sanitize="False" refresh="True"/> +</tool> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.