details: http://www.bx.psu.edu/hg/galaxy/rev/8fdcfecfe856 changeset: 3752:8fdcfecfe856 user: Greg Von Kuster <greg@bx.psu.edu> date: Thu May 06 19:39:27 2010 -0400 description: Add the modENCODEfly and modENCODEworm data source tools. diffstat: tools/data_source/fly_modencode.xml | 27 +++++++++++++++++++++++++++ tools/data_source/worm_modencode.xml | 27 +++++++++++++++++++++++++++ 2 files changed, 54 insertions(+), 0 deletions(-) diffs (62 lines): diff -r d3268bb6e48a -r 8fdcfecfe856 tools/data_source/fly_modencode.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/data_source/fly_modencode.xml Thu May 06 19:39:27 2010 -0400 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool name="modENCODE fly" id="modENCODEfly" tool_type="data_source"> + <description>server</description> + <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> + <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/fly" check_values="false" target="_top"> + <display>go to modENCODE fly server $GALAXY_URL</display> + <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEfly" /> + </inputs> + <request_param_translation> + <request_param galaxy_name="URL" remote_name="URL" missing=""> + <append_param separator="&" first_separator="?" join="="> + <value name="d" missing="" /> + <value name="dbkey" missing="" /> + <value name="q" missing="" /> + <value name="s" missing="" /> + <value name="t" missing="" /> + </append_param> + </request_param> + <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> + <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" /> + </request_param_translation> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="txt" /> + </outputs> + <options sanitize="False" refresh="True"/> +</tool> diff -r d3268bb6e48a -r 8fdcfecfe856 tools/data_source/worm_modencode.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/data_source/worm_modencode.xml Thu May 06 19:39:27 2010 -0400 @@ -0,0 +1,27 @@ +<?xml version="1.0"?> +<tool name="modENCODE worm" id="modENCODEworm" tool_type="data_source"> + <description>server</description> + <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command> + <inputs action="http://modencode.oicr.on.ca/fgb2/gbrowse/worm" check_values="false" target="_top"> + <display>go to modENCODE worm server $GALAXY_URL</display> + <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=modENCODEworm" /> + </inputs> + <request_param_translation> + <request_param galaxy_name="URL" remote_name="URL" missing=""> + <append_param separator="&" first_separator="?" join="="> + <value name="d" missing="" /> + <value name="dbkey" missing="" /> + <value name="q" missing="" /> + <value name="s" missing="" /> + <value name="t" missing="" /> + </append_param> + </request_param> + <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" /> + <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" /> + </request_param_translation> + <uihints minwidth="800"/> + <outputs> + <data name="output" format="txt" /> + </outputs> + <options sanitize="False" refresh="True"/> +</tool>