1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/fa0968cfe3c3/ Changeset: fa0968cfe3c3 User: guerler Date: 2014-03-24 09:50:52 Summary: UI: Modularize scratch book and make it reusable as regular ui element, refactor charts Affected #: 16 files diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/app.js --- a/config/plugins/visualizations/charts/static/app.js +++ b/config/plugins/visualizations/charts/static/app.js @@ -1,10 +1,10 @@ // dependencies -define(['mvc/ui/ui-modal', 'mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils', 'plugin/library/jobs', 'plugin/library/datasets', - 'plugin/views/charts', 'plugin/views/chart', - 'plugin/models/config', 'plugin/models/chart', 'plugin/models/charts', 'plugin/charts/types'], - function( Modal, Portlet, Ui, Utils, Jobs, Datasets, - ChartsView, ChartView, - Config, Chart, Charts, Types +define(['mvc/ui/ui-modal', 'mvc/ui/ui-portlet', 'plugin/library/ui', 'utils/utils', 'plugin/library/jobs', 'plugin/library/datasets', 'plugin/library/storage', + 'plugin/views/viewer', 'plugin/views/editor', + 'plugin/models/config', 'plugin/models/chart', 'plugin/charts/types'], + function( Modal, Portlet, Ui, Utils, Jobs, Datasets, Storage, + ViewerView, EditorView, + Config, Chart, Types ) { // widget @@ -23,91 +23,61 @@ this.modal = new Modal.View(); } - // create configuration model + // + // models + // this.config = new Config(); - - // job/data /processor - this.jobs = new Jobs(this); - - // create chart models this.types = new Types(); this.chart = new Chart(); - this.charts = new Charts(null, this); - // create dataset handler + // + // libraries + // + this.jobs = new Jobs(this); this.datasets = new Datasets(this); - - // create views - this.charts_view = new ChartsView(this); - this.chart_view = new ChartView(this); - - // create portlet - if (!this.options.config.widget) { - this.portlet = new Portlet.View({icon : 'fa-bar-chart-o'}); - } else { - this.portlet = $('<div></div>'); - } + this.storage = new Storage(this); + + // + // views + // + this.viewer_view = new ViewerView(this); + this.editor_view = new EditorView(this); // append views - this.portlet.append(this.charts_view.$el); - this.portlet.append(this.chart_view.$el); + this.$el.append(this.viewer_view.$el); + this.$el.append(this.editor_view.$el); - // set element - if (!this.options.config.widget) { - this.setElement(this.portlet.$el); + // pick start screen + if (!this.storage.load()) { + // show editor + this.go('editor'); } else { - this.setElement(this.portlet); - } - - // events - var self = this; - this.config.on('change:title', function() { - self._refreshTitle(); - }); - - // render - this.render(); - - // load charts - this.charts.load(); - - // start with chart view - if (this.charts.length == 0) { - this.go('chart_view'); - } else { - this.go('charts_view'); + // show viewport + this.go('viewer'); + + // redraw chart + this.chart.trigger('redraw'); } }, // loads a view and makes sure that all others are hidden go: function(view_id) { + // hide all tooltips + $('.tooltip').hide(); + // pick view switch (view_id) { - case 'chart_view' : - this.chart_view.show(); - this.charts_view.hide(); + case 'editor' : + this.editor_view.show(); + this.viewer_view.hide(); break; - case 'charts_view' : - this.chart_view.hide(); - this.charts_view.show(); + case 'viewer' : + this.editor_view.hide(); + this.viewer_view.show(); break; } }, - // render - render: function() { - this._refreshTitle(); - }, - - // refresh title - _refreshTitle: function() { - var title = this.config.get('title'); - if (title) { - title = ' - ' + title; - } - this.portlet.title('Charts' + title); - }, - // execute command execute: function(options) { }, diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/build-app.js --- 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t=this.buttonList[e];this.$buttons.find("#"+t).show()},hideButton:function(e){var t=this.buttonList[e];this.$buttons.find("#"+t).hide()},getButton:function(e){var t=this.buttonList[e];return this.$buttons.find("#"+t)},scrollTop:function(){return this.$body.scrollTop()},_create:function(e){var t=this;this.options=_.defaults(e,this.optionsDefault),this.options.body=="progress"&&(this.options.body=$('<div class="progress progress-striped active"><div class="progress-bar progress-bar-info" style="width:100%"></div></div>')),this.$el&&(this.$el.remove(),$(document).off("keyup")),this.setElement(this._template(this.options.title)),this.$dialog=this.$el.find(".modal-dialog"),this.$body=this.$el.find(".modal-body"),this.$footer=this.$el.find(".modal-footer"),this.$buttons=this.$el.find(".buttons"),this.$backdrop=this.$el.find(".modal-backdrop"),this.$body.html(this.options.body),this.options.backdrop||this.$backdrop.removeClass("in");if(this.options.buttons){this.buttonList={};var n=0;$.each(this.options.buttons,function(e,r){var i="button-"+n++;t.$buttons.append($('<button id="'+i+'"></button>').text(e).click(r)).append(" "),t.buttonList[e]=i})}else this.$footer.hide();$(this.elMain).append($(this.el)),this.options.closing_events&&(this.options.buttons.Pause||$(document).on("keyup",function(e){e.keyCode==27&&t.hide()}),this.$el.find(".modal-backdrop").on("click",function(){t.hide()}))},_template:function(e){return'<div class="modal"><div class="modal-backdrop fade in" style="z-index: -1;"></div><div class="modal-dialog"><div class="modal-content"><div class="modal-header"><button type="button" class="close" style="display: none;">×</button><h4 class="title">'+e+"</h4>"+"</div>"+'<div class="modal-body" style="position: static;"></div>'+'<div class="modal-footer">'+'<div class="buttons" style="float: right;"></div>'+"</div>"+"</div"+"</div>"+"</div>"}});return{View:t}}),define("mvc/ui/ui-portlet",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,optionsDefault:{title:"",icon:"",buttons:null,body:null,height:null,operations:null,placement:"bottom",overflow:"auto"},$title:null,$content:null,$buttons:null,$operations:null,initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.$content=this.$el.find("#content"),this.$title=this.$el.find("#title-text"),this.options.height&&(this.$el.find("#body").css("height",this.options.height),this.$el.find("#content").css("overflow",this.options.overflow)),this.$buttons=$(this.el).find("#buttons");if(this.options.buttons){var n=this;$.each(this.options.buttons,function(e,t){t.$el.prop("id",e),n.$buttons.append(t.$el)})}else this.$buttons.remove();this.$operations=$(this.el).find("#operations");if(this.options.operations){var 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id="'+e.id+'" class="styled-select">'+'<div class="button">'+'<i id="icon"/>'+"</div>"+'<select id="select" class="select '+e.cls+" "+e.id+'">';for(key in e.data){var n=e.data[key],r="";if(n.value==e.value||n.value=="")r="selected";t+='<option value="'+n.value+'" '+r+">"+n.label+"</option>"}return t+="</select></div>",t}});return{View:t}}),define("plugin/library/ui",["utils/utils","plugin/library/ui-select"],function(e,t){var n=Backbone.View.extend({optionsDefault:{title:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options))},title:function(e){this.$el.find("b").html(e)},_template:function(e){return"<label><b>"+e.title+"</b></label>"},value:function(){return options.title}}),r=Backbone.View.extend({optionsDefault:{id:null,title:"","float":"right",cls:"btn-default",icon:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){var t='<button id="'+e.id+'" type="submit" style="margin-right: 5px; float: '+e.float+';" type="button" class="btn '+e.cls+'">';return e.icon&&(t+='<i class="icon fa '+e.icon+'"></i> '),t+=e.title+"</button>",t}}),i=Backbone.View.extend({optionsDefault:{"float":"right",icon:"",tooltip:"",placement:"bottom",title:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).tooltip({title:t.tooltip,placement:"bottom"})},_template:function(e){return'<div><span class="fa '+e.icon+'" style="font-size: 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'+e.icon+'"/>',n+="</div>",n}}),o=Backbone.View.extend({optionsDefault:{title:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),$(this.el).on("click",t.onclick)},_template:function(e){return'<div><a href="javascript:void(0)">'+e.title+"</a></div>"}}),u=Backbone.View.extend({optionsDefault:{message:"",status:"info",persistent:!1},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement("<div></div>")},update:function(t){this.options=e.merge(t,this.optionsDefault);if(t.message!=""){this.$el.html(this._template(this.options)),this.$el.fadeIn();if(!t.persistent){var n=this;window.setTimeout(function(){n.$el.is(":visible")?n.$el.fadeOut():n.$el.hide()},3e3)}}else this.$el.fadeOut()},_template:function(e){return'<div class="alert alert-'+e.status+'" style="padding: 2px 2px 2px 10px;">'+e.message+"</div>"}}),a=Backbone.View.extend({optionsDefault:{onclick:null,searchword:""},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options));var n=this;this.options.onclick&&this.$el.on("submit",function(e){var t=n.$el.find("#search");n.options.onclick(t.val())})},_template:function(e){return'<div class="search"><form onsubmit="return false;"><input id="search" class="form-control input-sm" type="text" name="search" placeholder="Search..." value="'+e.searchword+'">'+'<button type="submit" class="btn search-btn">'+'<i class="fa fa-search"></i>'+"</button>"+"</form>"+"</div>"}}),f=Backbone.View.extend({optionsDefault:{title:"Unlabeled",body:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.body&&this.$el.find(".body").append(this.options.body)},_template:function(e){return'<div id="title" 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e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),t+=" "+e.title+"</a>"+"</li>",t},_templateMenu:function(){return'<ul class="menu dropdown-menu pull-right" role="menu"></ul>'},_templateDivider:function(){return'<li class="divider"></li>'},_template:function(e){var t='<div id="'+e.id+'" class="button-menu btn-group">'+'<button type="button" class="root btn btn-default dropdown-toggle" data-toggle="dropdown">';return e.icon&&(t+='<i class="fa '+e.icon+'"></i>'),"</button></div>",t}}),c=Backbone.View.extend({optionsDefault:{value:"",type:"text",placeholder:"",disabled:!1,visible:!0},initialize:function(t){this.options=e.merge(t,this.optionsDefault),this.setElement(this._template(this.options)),this.options.disabled&&this.$el.prop("disabled",!0),this.options.visible||this.$el.hide();var n=this;this.options.onchange&&this.$el.on("input",function(){n.options.onchange()})},value:function(e){return e!==undefined&&this.$el.val(e),this.$el.val()},_template:function(e){return'<input id="'+e.id+'" 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n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t){var n=$("<td></td>");t&&n.css("width",t),n.append(e),this.row.append(n)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},remove:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},removeAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.remove(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="grid"><thead></thead><tbody style="cursor: pointer;"></tbody></table><tmessage>'+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({list:{},optionsDefault:{height:300},initialize:function(t,r){this.app=t,this.options=n.merge(r,this.optionsDefault),this.portlet=new e.View({title:"title",height:this.options.height,overflow:"hidden"}),this.setElement(this.portlet.$el);var i=this;this.app.charts.on("remove",function(e){i._removeChart(e.id)}),this.app.charts.on("redraw",function(e){i._drawChart(e)})},showChart:function(e){this.show(),this.hideCharts();var t=this.list[e];if(t){var n=this.app.charts.get(e);this.portlet.title(n.get("title")),t.$el.show(),$(window).trigger("resize")}},hideCharts:function(){this.$el.find(".item").hide()},show:function(){$(".tooltip").hide(),this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_drawChart:function(e){var t=this;if(!e.ready()){t.app.log("viewport:_drawChart()","Invalid attempt to draw chart before completion.");return}var n=e.id;this._removeChart(n);var r="#"+n,i=$(this._template({id:r}));this.portlet.append(i);var s=d3.select(i.find("svg")[0]);this.list[n]={svg:s,$el:i},e.off("change:state"),e.on("change:state",function(){var t=i.find("#info"),n=t.find("#icon");n.removeClass(),t.show(),t.find("#text").html(e.get("state_info"));var r=e.get("state");switch(r){case"ok":t.hide();break;case"failed":n.addClass("fa fa-warning");break;default:n.addClass("fa fa-spinner fa-spin")}}),e.state("wait","Please wait...");var o=e.get("type"),u=this.app.types.get(o),t=this;require(["plugin/charts/"+o+"/"+o],function(n){var r=new n(t.app,{svg:s});u.execute?t.app.jobs.submit(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){r.draw(e,t._defaultRequestDictionary(e))}):r.draw(e,t._defaultRequestDictionary(e))})},_removeChart:function(e){var t=this.list[e];t&&(t.svg.remove(),t.$el.remove())},_template:function(e){return'<div id="'+e.id.substr(1)+'" class="item">'+'<span id="info">'+'<span id="icon" style="font-size: 1.2em; display: inline-block;"/>'+'<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>'+"</span>"+'<svg style="height: auto;"/>'+"</div>"},_defaultRequestString:function(e){var t=this.app.types.get(e.get("type")),n="",r=0;return e.groups.each(function(e){for(var i in t.columns)n+=i+"_"+ ++r+":"+(parseInt(e.get(i))+1)+", "}),n.substring(0,n.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t=this.app.types.get(e.get("type")),n={id:e.get("dataset_id"),groups:[]},r=0;return e.groups.each(function(e){var i={};for(var s in t.columns)i[s]=e.get(s);n.groups.push({key:++r+":"+e.get("key"),columns:i})}),n}})}),define("plugin/views/charts",["mvc/ui/ui-portlet","plugin/library/ui-table","plugin/library/ui","utils/utils","plugin/models/group","plugin/views/viewport"],function(e,t,n,r,i,s){return Backbone.View.extend({initialize:function(i,o){this.app=i,this.viewport_view=new s(i),this.table=new t.View({content:"Add charts to this table.",ondblclick:function(e){u._showChartView(e)},onchange:function(e){var t=u.app.charts.get(e);u.app.config.set("title",t.get("title")),u.viewport_view.showChart(e)}});var u=this;this.portlet=new e.View({icon:"fa-list",title:"List of created charts:",height:100,operations:{"new":new n.ButtonIcon({icon:"fa-magic",tooltip:"Create a new Chart",title:"New",onclick:function(){u.app.go("chart_view"),u.app.chart.reset()}}),edit:new n.ButtonIcon({icon:"fa-gear",tooltip:"Customize this Chart",title:"Customize",onclick:function(){var e=u.table.value();if(!e)return;u._showChartView(e)}}),"delete":new n.ButtonIcon({icon:"fa-trash-o",tooltip:"Delete this Chart",title:"Delete",onclick:function(){var e=u.table.value();if(!e)return;var t=u.app.charts.get(e);u._wait(t,function(){u.app.modal.show({title:"Are you sure?",body:'The selected chart "'+t.get("title")+'" will be irreversibly deleted.',buttons:{Cancel:function(){u.app.modal.hide()},Delete:function(){u.app.modal.hide(),u.app.charts.remove(e),u.app.jobs.cleanup(t)}}})})}})}}),this.portlet.append(this.table.$el),this.app.options.config.widget||this.$el.append(this.portlet.$el),this.$el.append(r.wrap("")),this.$el.append(this.viewport_view.$el);var u=this;this.app.charts.on("add",function(e){u._addChart(e)}),this.app.charts.on("remove",function(e){u._removeChart(e)}),this.app.charts.on("change",function(e){u._changeChart(e)})},show:function(){this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_addChart:function(e){var t=e.get("title");t==""&&(t="Untitled"),this.table.add(t);var n=this.app.types.get(e.get("type"));this.table.add(n.title),this.table.add("Last change: "+e.get("date")),this.table.prepend(e.get("id")),this.table.value(e.get("id"))},_removeChart:function(e){this.table.remove(e.id),this.app.charts.save(),this.table.size()==0?(this.app.go("chart_view"),this.app.chart.reset()):this.table.value(this.app.charts.last().id)},_changeChart:function(e){e.get("type")&&(this._addChart(e),this.table.value(e.id))},_showChartView:function(e){var t=this,n=this.app.charts.get(e);this._wait(n,function(){t.app.go("chart_view"),t.app.chart.copy(n)})},_wait:function(e,t){if(e.ready())t();else{var n=this;this.app.modal.show({title:"Please wait!",body:'The selected chart "'+e.get("title")+'" is currently being processed. Please wait...',buttons:{Close:function(){n.app.modal.hide()},Retry:function(){n.app.modal.hide(),setTimeout(function(){n._wait(e,t)},n.app.config.get("query_timeout"))}}})}}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,list:{},$nav:null,$content:null,first_tab:null,optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=e.id,n={$title:$(this._template_tab(e)),$content:$(this._template_tab_content(e)),removable:e.ondel?!0:!1};this.list[t]=n,this.options.onnew?this.$nav.find("#new-tab").before(n.$title):this.$nav.append(n.$title),n.$content.append(e.$el),this.$content.append(n.$content),_.size(this.list)==1&&(n.$title.addClass("active"),n.$content.addClass("active"),this.first_tab=t);if(e.ondel){var r=this,i=n.$title.find("#delete");i.tooltip({title:"Delete this tab",placement:"bottom",container:r.$el}),i.on("click",function(){return i.tooltip("destroy"),r.$el.find(".tooltip").remove(),e.ondel(),!1})}e.onclick&&n.$title.on("click",function(){e.onclick()})},del:function(e){var t=this.list[e];t.$title.remove(),t.$content.remove(),delete t,this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list){var t=this.list[e];t.removable&&this.del(e)}},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&this.list[e].$title.find("a").tab("show")},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.list[e].$title.find("#text");return t&&n.html(t),n.html()},_template:function(e){return'<div class="tabbable tabs-left"><ul class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i style="font-size: 0.8em; margin-right: 5px;" class="fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="title-'+e.id+'">'+'<a title="" href="#tab-'+e.id+'" data-toggle="tab" data-original-title="">'+'<span id="text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" style="font-size: 0.8em; margin-left: 5px; cursor: pointer;" class="fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/models/chart",["plugin/models/groups","mvc/visualization/visualization-model"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"ok",state_info:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state_info",t),this.set("state",e)},ready:function(){return this.get("state")=="ok"||this.get("state")=="failed"}})}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({columns:[],initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(){s.group.set("key",s.group_key.value())}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.app.types.get(n);this.table.removeAll();var s={};for(var o in i.columns){var u=this.group.get(o);u||this.group.set(o,0);var a=i.columns[o],f=new t.Select.View({id:"select_"+o,gid:o,onchange:function(e){r.group.set(this.gid,e)},value:u,wait:!0});this.table.add(a.title,"25%"),this.table.add(f.$el),this.table.append(o),s[o]=f}this.app.datasets.request({id:e},function(e){r.columns=[];var t=e.metadata_column_types;for(var n in t)(t[n]=="int"||t[n]=="float")&&r.columns.push({label:"Column: "+(parseInt(n)+1)+" ["+t[n]+"]",value:n});for(var n in s)s[n].update(r.columns),s[n].show()})},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({initialize:function(r){this.table_title=new t.Label({title:r.title}),this.table=new e.View({content:r.content});var i=$("<div/>");i.append(n.wrap(this.table_title.$el)),i.append(n.wrap(this.table.$el)),this.setElement(i)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.removeAll();for(var n in e)this._add(n,e[n],t)},_add:function(e,n,r){var i=null,s=n.type;switch(s){case"text":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"select":i=new t.Select.View({data:n.data,onchange:function(){r.set(e,i.value())}});break;case"slider":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"separator":i=$("<div/>");break;default:console.log("ui-table-form:_add","Unknown setting type ("+n.type+")");return}if(s!="separator"){r.get(e)||r.set(e,n.init),i.value(r.get(e));var o=$("<div/>");o.append(i.$el),o.append('<div class="toolParamHelp" style="font-size: 0.9em;">'+n.info+"</div>"),this.table.add('<span style="white-space: nowrap;">'+n.title+"</span>","25%"),this.table.add(o)}else this.table.add('<h6 style="white-space: nowrap;">'+n.title+":<h6/>"),this.table.add($("<div/>"));this.table.append(e)}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View({title:"Chart options:",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refreshTable()})},_refreshTable:function(){var e=this.chart.get("type");if(!e)return;var t=this.app.types.get(e);this.form.title(t.title+":"),this.form.update(t.settings,this.chart.settings)}})}),define("plugin/views/chart",["mvc/ui/ui-tabs","plugin/library/ui-table","plugin/library/ui","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings"],function(e,t,n,r,i,s,o,u){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(i,s){this.app=i,this.chart=this.app.chart,this.options=r.merge(s,this.optionsDefault);var o=this;this.table=new t.View({header:!1,onconfirm:function(e){o.chart.groups.length>0?o.app.modal.show({title:"Switching to another chart type?",body:"If you continue your settings and selections will be cleared.",buttons:{Cancel:function(){o.app.modal.hide()},Continue:function(){o.app.modal.hide(),o.table.value(e)}}}):o.table.value(e)},onchange:function(e){o.chart.groups.reset(),o.chart.settings.clear(),o.chart.set({type:e})},ondblclick:function(e){o.tabs.show("settings")},content:"No chart types available"});var a=0,f=i.types.attributes;for(var l in f){var c=f[l];this.table.add(++a+"."),c.execute?this.table.add(c.title+" (requires processing)"):this.table.add(c.title),this.table.append(l)}this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=o._addGroupModel();o.tabs.show(e.id)},operations:{save:new n.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){o.app.go("charts_view"),o._saveChart()}}),back:new n.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Return",onclick:function(){o.app.go("charts_view")}})}}),this.title=new n.Input({placeholder:"Chart title",onchange:function(){o.app.config.set("title",o.title.value())}});var h=$("<div/>");h.append(r.wrap((new n.Label({title:"Provide a chart title:"})).$el)),h.append(r.wrap(this.title.$el)),h.append(r.wrap((new n.Label({title:"Select a chart type:"})).$el)),h.append(r.wrap(this.table.$el)),this.tabs.add({id:"main",title:"Start",$el:h}),this.settings=new u(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.setElement(this.tabs.$el),this.tabs.hideOperation("back");var o=this;this.chart.on("change:title",function(e){o.title.value(e.get("title")),o.app.config.set("title",e.get("title"))}),this.chart.on("change:type",function(e){o.table.value(e.get("type"))}),this.chart.on("reset",function(e){o._resetChart()}),this.app.charts.on("add",function(e){o.tabs.showOperation("back")}),this.app.charts.on("remove",function(e){o.app.charts.length==0&&o.tabs.hideOperation("back")}),this.app.charts.on("reset",function(e){o.tabs.hideOperation("back")}),this.app.chart.groups.on("add",function(e){o._addGroup(e)}),this.app.chart.groups.on("remove",function(e){o._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){o._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){o._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){$(".tooltip").hide(),this.$el.hide()},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Chart data"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new s({id:r.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new o(this.app,{group:e}),r=t.chart.groups.length;this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey()},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey()},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",r.uuid()),this.chart.set("type","bardiagram"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart")},_saveChart:function(){this.chart.set({type:this.table.value(),title:this.title.value(),date:r.time()}),this.chart.groups.length==0&&this._addGroupModel();var e=this.app.charts.get(this.chart.id);e?e.copy(this.chart):(e=this.chart.clone(),e.copy(this.chart),this.app.charts.add(e)),e.trigger("redraw",e),this.app.charts.save()}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e3,query_timeout:500,title:"Create a new chart"}})}),define("plugin/models/charts",["plugin/models/chart","plugin/models/group"],function(e,t){return Backbone.Collection.extend({model:e,vis:null,initialize:function(e,t){this.app=t,this.id=this.app.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.app.options.config.dataset_id,charts:[]}}),this.id&&(this.vis.id=this.id);var n=this.app.options.config.charts;n&&(this.vis.get("config").charts=n)},save:function(){this.vis.get("config").charts=[];var e=this;this.each(function(t){var n={attributes:t.attributes,settings:t.settings.attributes,groups:[]};t.groups.each(function(e){n.groups.push(e.attributes)}),e.vis.get("config").charts.push(n)});var e=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n),alert("Error loading data:\n"+e.responseText)}).then(function(t){t&&t.id&&(e.id=t.id)})},load:function(){var n=this.vis.get("config").charts;for(var r in n){var 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"+n)})},_loop:function(t,n){var r=this;e.request("GET",config.root+"api/jobs/"+t,{},function(e){n(e)||setTimeout(function(){r._loop(t,n)},r.app.config.get("query_timeout"))})},_refreshHdas:function(){Galaxy&&Galaxy.currHistoryPanel&&Galaxy.currHistoryPanel.refreshHdas()}})}),define("plugin/library/datasets",["utils/utils"],function(e){return Backbone.Collection.extend({list:{},initialize:function(t,n){this.app=t,this.options=e.merge(n,this.optionsDefault)},request:function(t,n,r){var i=this;if(t.groups)this._fetch(t,n);else{var s=this.list[t.id];if(s){n(s);return}e.request("GET",config.root+"api/datasets/"+t.id,{},function(e){switch(e.state){case"error":r&&r(e);break;default:i.list[t.id]=e,n(e)}})}},_fetch:function(t,n){var r=t.start?t.start:0,i=Math.abs(t.end-t.start),s=this.app.config.get("query_limit");if(!i||i>s)i=s;var o="",u={},a=0;for(var f in t.groups){var l=t.groups[f];for(var c in l.columns){var h=l.columns[c];o+=h+",",u[h]=a,a++}}if(a==0){n({});return}o=o.substring(0,o.length-1);var p=t.groups.slice(0);for(var f in p)p[f].values=[];var d=this;e.request("GET",config.root+"api/datasets/"+t.id,{data_type:"raw_data",provider:"dataset-column",limit:i,offset:r,indeces:o},function(e){for(var i in e.data){var s=e.data[i];for(var o in t.groups){var a=t.groups[o],f={x:parseInt(i)+r};for(var l in a.columns){var c=a.columns[l],h=u[c],d=s[h];if(isNaN(d)||!d)d=0;f[l]=d}p[o].values.push(f)}}n(p)})}})}),define("plugin/models/group",[],function(){return Backbone.Model.extend({defaults:{key:"Data label",date:""},reset:function(){this.clear({silent:!0}).set(this.defaults),this.trigger("reset",this)}})}),define("plugin/models/groups",["plugin/models/group"],function(e){return Backbone.Collection.extend({model:e})});var Visualization=Backbone.Model.extend({defaults:{config:{}},urlRoot:function(){var e="/api/visualizations";return window.galaxy_config&&galaxy_config.root?galaxy_config.root+e:e},initialize:function(e){_.isObject(e.config)&&_.isObject(this.defaults.config)&&_.defaults(e.config,this.defaults.config),this._setUpListeners()},_setUpListeners:function(){},set:function(e,t){if(e==="config"){var n=this.get("config");_.isObject(n)&&(t=_.extend(_.clone(n),t))}return Backbone.Model.prototype.set.call(this,e,t),this},toString:function(){var e=this.get("id")||"";return this.get("title")&&(e+=":"+this.get("title")),"Visualization("+e+")"}}),VisualizationCollection=Backbone.Collection.extend({model:Visualization,url:function(){return galaxy_config.root+"api/visualizations"},initialize:function(e,t){t=t||{}},set:function(e,t){var n=this;e=_.map(e,function(e){var t=n.get(e.id);if(!t)return e;var r=t.toJSON();return _.extend(r,e),r}),Backbone.Collection.prototype.set.call(this,e,t)},toString:function(){return["VisualizationCollection(",[this.historyId,this.length].join(),")"].join("")}});define("mvc/visualization/visualization-model",function(){}),define("plugin/models/chart",["plugin/models/groups","mvc/visualization/visualization-model"],function(e){return Backbone.Model.extend({defaults:{id:null,title:"",type:"",date:null,state:"ok",state_info:""},initialize:function(t){this.groups=new e,this.settings=new Backbone.Model},reset:function(){this.clear({silent:!0}).set(this.defaults),this.groups.reset(),this.settings.clear(),this.trigger("reset",this)},copy:function(e){var t=this;t.clear({silent:!0}).set(this.defaults),t.set(e.attributes),t.settings=e.settings.clone(),t.groups.reset(),e.groups.each(function(e){t.groups.add(e.clone())}),t.trigger("change",t)},state:function(e,t){this.set("state_info",t),this.set("state",e)},ready:function(){return this.get("state")=="ok"||this.get("state")=="failed"}})}),define("plugin/library/storage",["utils/utils","plugin/models/chart","plugin/models/group"],function(e,t,n){return Backbone.Model.extend({vis:null,initialize:function(e){this.app=e,this.chart=this.app.chart,this.options=this.app.options,this.id=this.options.id,this.vis=new Visualization({type:"charts",config:{dataset_id:this.options.config.dataset_id,chart_dict:{}}}),this.id&&(this.vis.id=this.id);var t=this.options.config.chart_dict;t&&(this.vis.get("config").chart_dict=t)},save:function(){var e=this.app.chart;this.vis.get("config").chart_dict={};var t=e.get("title");t!=""&&this.vis.set("title",t);var n={attributes:e.attributes,settings:e.settings.attributes,groups:[]};e.groups.each(function(e){n.groups.push(e.attributes)}),this.vis.get("config").chart_dict=n;var r=this;this.vis.save().fail(function(e,t,n){console.error(e,t,n),alert("Error loading data:\n"+e.responseText)}).then(function(e){e&&e.id&&(r.id=e.id)})},load:function(){var e=this.vis.get("config").chart_dict;if(!e.attributes)return!1;this.chart.set(e.attributes),this.chart.settings.set(e.settings);for(var t in e.groups)this.chart.groups.add(new n(e.groups[t]));return this.chart.state("ok","Loaded previously saved visualization."),!0}})}),define("plugin/views/viewport",["mvc/ui/ui-portlet","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({height:300,initialize:function(e,t){this.app=e,this.chart=this.app.chart,this.options=n.merge(t,this.optionsDefault),this.setElement($(this._template()));var r=this;this.chart.on("redraw",function(){r._draw(r.chart)})},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_draw:function(e){var t=this;if(!e.ready()){this.app.log("viewport:_drawChart()","Invalid attempt to draw chart before completion.");return}this.svg&&this.svg.remove(),this.svg=document.createElementNS("http://www.w3.org/2000/svg","svg"),this.svg.setAttribute("height",this.height),this.$el.append(this.svg),this.svg=d3.select(this.$el.find("svg")[0]),e.off("change:state"),e.on("change:state",function(){var n=t.$el.find("#info"),r=n.find("#icon");r.removeClass(),n.show(),n.find("#text").html(e.get("state_info"));var i=e.get("state");switch(i){case"ok":n.hide();break;case"failed":r.addClass("fa fa-warning");break;default:r.addClass("fa fa-spinner fa-spin")}}),e.state("wait","Please wait...");var n=e.get("type"),r=this.app.types.get(n),t=this;require(["plugin/charts/"+n+"/"+n],function(n){var i=new n(t.app,{svg:t.svg});r.execute?t.app.jobs.submit(e,t._defaultSettingsString(e),t._defaultRequestString(e),function(){i.draw(e,t._defaultRequestDictionary(e))}):i.draw(e,t._defaultRequestDictionary(e))})},_template:function(){return'<div><div id="info" style="text-align: center; margin-top: 20px;"><span id="icon" style="font-size: 1.2em; display: inline-block;"/><span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/></div></div>'},_defaultRequestString:function(e){var t=this.app.types.get(e.get("type")),n="",r=0;return e.groups.each(function(e){for(var i in t.columns)n+=i+"_"+ ++r+":"+(parseInt(e.get(i))+1)+", "}),n.substring(0,n.length-2)},_defaultSettingsString:function(e){var t="";for(key in e.settings.attributes)t+=key+":"+e.settings.get(key)+", ";return t.substring(0,t.length-2)},_defaultRequestDictionary:function(e){var t=this.app.types.get(e.get("type")),n={id:e.get("dataset_id"),groups:[]},r=0;return e.groups.each(function(e){var i={};for(var s in t.columns)i[s]=e.get(s);n.groups.push({key:++r+":"+e.get("key"),columns:i})}),n}})}),define("plugin/views/viewer",["utils/utils","plugin/library/ui","mvc/ui/ui-portlet","plugin/models/group","plugin/views/viewport"],function(e,t,n,r,i){return Backbone.View.extend({initialize:function(e,r){this.app=e,this.chart=this.app.chart,this.viewport_view=new i(e);var s=this;this.portlet=new n.View({icon:"fa-bar-chart-o",title:"Viewport",operations:{edit_button:new t.ButtonIcon({icon:"fa-gear",tooltip:"Customize Chart",title:"Customize",onclick:function(){s._wait(s.app.chart,function(){s.app.go("editor")})}})}}),this.portlet.append(this.viewport_view.$el),this.setElement(this.portlet.$el);var s=this;this.chart.on("change:title",function(){s._refreshTitle()})},show:function(){this.$el.show(),$(window).trigger("resize")},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");e&&(e=" - "+e),this.portlet.title("Charts"+e)},_wait:function(e,t){if(e.ready())t();else{var n=this;this.app.modal.show({title:"Please wait!",body:"Your chart is currently being processed. Please wait...",buttons:{Close:function(){n.app.modal.hide()},Retry:function(){n.app.modal.hide(),setTimeout(function(){n._wait(e,t)},n.app.config.get("query_timeout"))}}})}}})}),define("mvc/ui/ui-tabs",["utils/utils"],function(e){var t=Backbone.View.extend({visible:!1,list:{},$nav:null,$content:null,first_tab:null,optionsDefault:{title_new:"",operations:null,onnew:null},initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(this.options));this.$nav=n.find(".tab-navigation"),this.$content=n.find(".tab-content"),this.setElement(n),this.list={};var r=this;this.options.operations&&$.each(this.options.operations,function(e,t){t.$el.prop("id",e),r.$nav.find(".operations").append(t.$el)});if(this.options.onnew){var i=$(this._template_tab_new(this.options));this.$nav.append(i),i.tooltip({title:"Add a new tab",placement:"bottom",container:r.$el}),i.on("click",function(e){i.tooltip("hide"),r.options.onnew()})}},add:function(e){var t=e.id,n={$title:$(this._template_tab(e)),$content:$(this._template_tab_content(e)),removable:e.ondel?!0:!1};this.list[t]=n,this.options.onnew?this.$nav.find("#new-tab").before(n.$title):this.$nav.append(n.$title),n.$content.append(e.$el),this.$content.append(n.$content),_.size(this.list)==1&&(n.$title.addClass("active"),n.$content.addClass("active"),this.first_tab=t);if(e.ondel){var r=this,i=n.$title.find("#delete");i.tooltip({title:"Delete this tab",placement:"bottom",container:r.$el}),i.on("click",function(){return i.tooltip("destroy"),r.$el.find(".tooltip").remove(),e.ondel(),!1})}e.onclick&&n.$title.on("click",function(){e.onclick()})},del:function(e){var t=this.list[e];t.$title.remove(),t.$content.remove(),delete t,this.first_tab==e&&(this.first_tab=null),this.first_tab!=null&&this.show(this.first_tab)},delRemovable:function(){for(var e in this.list){var t=this.list[e];t.removable&&this.del(e)}},show:function(e){this.$el.fadeIn("fast"),this.visible=!0,e&&this.list[e].$title.find("a").tab("show")},hide:function(){this.$el.fadeOut("fast"),this.visible=!1},hideOperation:function(e){this.$nav.find("#"+e).hide()},showOperation:function(e){this.$nav.find("#"+e).show()},setOperation:function(e,t){var n=this.$nav.find("#"+e);n.off("click"),n.on("click",t)},title:function(e,t){var n=this.list[e].$title.find("#text");return t&&n.html(t),n.html()},_template:function(e){return'<div class="tabbable tabs-left"><ul class="tab-navigation nav nav-tabs"><div class="operations" style="float: right; margin-bottom: 4px;"></div></ul><div class="tab-content"/></div>'},_template_tab_new:function(e){return'<li id="new-tab"><a href="javascript:void(0);"><i style="font-size: 0.8em; margin-right: 5px;" class="fa fa-plus-circle"/>'+e.title_new+"</a>"+"</li>"},_template_tab:function(e){var t='<li id="title-'+e.id+'">'+'<a title="" href="#tab-'+e.id+'" data-toggle="tab" data-original-title="">'+'<span id="text">'+e.title+"</span>";return e.ondel&&(t+='<i id="delete" style="font-size: 0.8em; margin-left: 5px; cursor: pointer;" class="fa fa-minus-circle"/>'),t+="</a></li>",t},_template_tab_content:function(e){return'<div id="tab-'+e.id+'" class="tab-pane"/>'}});return{View:t}}),define("plugin/library/ui-table",["utils/utils"],function(e){var t=Backbone.View.extend({row:null,row_count:0,optionsDefault:{content:"No content available.",onchange:null,ondblclick:null,onconfirm:null},events:{click:"_onclick",dblclick:"_ondblclick"},first:!0,initialize:function(t){this.options=e.merge(t,this.optionsDefault);var n=$(this._template(t));this.$thead=n.find("thead"),this.$tbody=n.find("tbody"),this.$tmessage=n.find("tmessage"),this.setElement(n),this.row=$("<tr></tr>")},addHeader:function(e){var t=$("<th></th>");t.append(e),this.row.append(t)},appendHeader:function(){this.$thead.append(this.row),this.row=$("<tr></tr>")},add:function(e,t){var n=$("<td></td>");t&&n.css("width",t),n.append(e),this.row.append(n)},append:function(e){this._commit(e)},prepend:function(e){this._commit(e,!0)},remove:function(e){var t=this.$tbody.find("#"+e);t.length>0&&(t.remove(),this.row_count--,this._refresh())},removeAll:function(){this.$tbody.html(""),this.row_count=0,this._refresh()},value:function(e){this.before=this.$tbody.find(".current").attr("id"),e!==undefined&&(this.$tbody.find("tr").removeClass("current"),e&&this.$tbody.find("#"+e).addClass("current"));var t=this.$tbody.find(".current").attr("id");return t===undefined?null:(t!=this.before&&this.options.onchange&&this.options.onchange(e),t)},size:function(){return this.$tbody.find("tr").length},_commit:function(e,t){this.remove(e),this.row.attr("id",e),t?this.$tbody.prepend(this.row):this.$tbody.append(this.row),this.row=$("<tr></tr>"),this.row_count++,this._refresh()},_onclick:function(e){var t=this.value(),n=$(e.target).closest("tr").attr("id");n&&t!=n&&(this.options.onconfirm?this.options.onconfirm(n):this.value(n))},_ondblclick:function(e){var t=this.value();t&&this.options.ondblclick&&this.options.ondblclick(t)},_refresh:function(){this.row_count==0?this.$tmessage.show():this.$tmessage.hide()},_template:function(e){return'<div><table class="grid"><thead></thead><tbody style="cursor: pointer;"></tbody></table><tmessage>'+e.content+"</tmessage>"+"<div>"}});return{View:t}}),define("plugin/views/group",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){return Backbone.View.extend({columns:[],initialize:function(r,i){this.app=r;var s=this;this.chart=this.app.chart,this.group=i.group,this.group_key=new t.Input({placeholder:"Data label",onchange:function(){s.group.set("key",s.group_key.value())}}),this.table=new e.View({content:"No data column."});var o=$("<div/>");o.append(n.wrap((new t.Label({title:"Provide a label:"})).$el)),o.append(n.wrap(this.group_key.$el)),o.append(n.wrap((new t.Label({title:"Select columns:"})).$el)),o.append(n.wrap(this.table.$el)),this.setElement(o);var s=this;this.chart.on("change:dataset_id",function(){s._refreshTable()}),this.chart.on("change:type",function(){s._refreshTable()}),this.group.on("change:key",function(){s._refreshGroupKey()}),this.group.on("change",function(){s._refreshGroup()}),this._refreshTable(),this._refreshGroupKey(),this._refreshGroup()},_refreshTable:function(){var e=this.chart.get("dataset_id"),n=this.chart.get("type");if(!e||!n)return;var r=this,i=this.app.types.get(n);this.table.removeAll();var s={};for(var o in i.columns){var u=this.group.get(o);u||this.group.set(o,0);var a=i.columns[o],f=new t.Select.View({id:"select_"+o,gid:o,onchange:function(e){r.group.set(this.gid,e)},value:u,wait:!0});this.table.add(a.title,"25%"),this.table.add(f.$el),this.table.append(o),s[o]=f}this.app.datasets.request({id:e},function(e){r.columns=[];var t=e.metadata_column_types;for(var n in t)(t[n]=="int"||t[n]=="float")&&r.columns.push({label:"Column: "+(parseInt(n)+1)+" ["+t[n]+"]",value:n});for(var n in s)s[n].update(r.columns),s[n].show()})},_refreshGroup:function(){this.group.set("date",n.time())},_refreshGroupKey:function(){var e=this.group.get("key");e===undefined&&(e=""),this.group_key.value(e)}})}),define("plugin/library/ui-table-form",["plugin/library/ui-table","plugin/library/ui","utils/utils"],function(e,t,n){var r=Backbone.View.extend({initialize:function(r){this.table_title=new t.Label({title:r.title}),this.table=new e.View({content:r.content});var i=$("<div/>");i.append(n.wrap(this.table_title.$el)),i.append(n.wrap(this.table.$el)),this.setElement(i)},title:function(e){this.table_title.title(e)},update:function(e,t){this.table.removeAll();for(var n in e)this._add(n,e[n],t)},_add:function(e,n,r){var i=null,s=n.type;switch(s){case"text":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"select":i=new t.Select.View({data:n.data,onchange:function(){r.set(e,i.value())}});break;case"slider":i=new t.Input({placeholder:n.placeholder,onchange:function(){r.set(e,i.value())}});break;case"separator":i=$("<div/>");break;default:console.log("ui-table-form:_add","Unknown setting type ("+n.type+")");return}if(s!="separator"){r.get(e)||r.set(e,n.init),i.value(r.get(e));var o=$("<div/>");o.append(i.$el),o.append('<div class="toolParamHelp" style="font-size: 0.9em;">'+n.info+"</div>"),this.table.add('<span style="white-space: nowrap;">'+n.title+"</span>","25%"),this.table.add(o)}else this.table.add('<h6 style="white-space: nowrap;">'+n.title+":<h6/>"),this.table.add($("<div/>"));this.table.append(e)}});return{View:r}}),define("plugin/views/settings",["plugin/library/ui","plugin/library/ui-table-form","utils/utils"],function(e,t,n){return Backbone.View.extend({initialize:function(e,n){this.app=e;var r=this;this.chart=this.app.chart,this.form=new t.View({title:"Chart options:",content:"This chart type does not provide any options."}),this.setElement(this.form.$el);var r=this;this.chart.on("change",function(){r._refreshTable()})},_refreshTable:function(){var e=this.chart.get("type");if(!e)return;var t=this.app.types.get(e);this.form.title(t.title+":"),this.form.update(t.settings,this.chart.settings)}})}),define("plugin/views/editor",["mvc/ui/ui-tabs","plugin/library/ui-table","plugin/library/ui","mvc/ui/ui-portlet","utils/utils","plugin/models/chart","plugin/models/group","plugin/views/group","plugin/views/settings"],function(e,t,n,r,i,s,o,u,a){return Backbone.View.extend({optionsDefault:{header:!0,content:"No content available."},initialize:function(s,o){this.app=s,this.chart=this.app.chart,this.options=i.merge(o,this.optionsDefault),this.portlet=new r.View({icon:"fa-bar-chart-o",title:"Editor",operations:{save:new n.ButtonIcon({icon:"fa-save",tooltip:"Draw Chart",title:"Draw",onclick:function(){u.app.go("viewer"),u._saveChart()}}),back:new n.ButtonIcon({icon:"fa-caret-left",tooltip:"Return to Viewer",title:"Return",onclick:function(){u.app.go("viewer"),u.app.storage.load()}})}});var u=this;this.table=new t.View({header:!1,onconfirm:function(e){u.chart.groups.length>0?u.app.modal.show({title:"Switching to another chart type?",body:"If you continue your settings and selections will be cleared.",buttons:{Cancel:function(){u.app.modal.hide()},Continue:function(){u.app.modal.hide(),u.table.value(e)}}}):u.table.value(e)},onchange:function(e){u.chart.groups.reset(),u.chart.settings.clear(),u.chart.set({type:e})},ondblclick:function(e){u.tabs.show("settings")},content:"No chart types available"});var f=0,l=s.types.attributes;for(var c in l){var h=l[c];this.table.add(++f+"."),h.execute?this.table.add(h.title+" (requires processing)"):this.table.add(h.title),this.table.append(c)}this.tabs=new e.View({title_new:"Add Data",onnew:function(){var e=u._addGroupModel();u.tabs.show(e.id)}}),this.title=new n.Input({placeholder:"Chart title",onchange:function(){u.app.config.set("title",u.title.value())}});var p=$("<div/>");p.append(i.wrap((new n.Label({title:"Provide a chart title:"})).$el)),p.append(i.wrap(this.title.$el)),p.append(i.wrap((new n.Label({title:"Select a chart type:"})).$el)),p.append(i.wrap(this.table.$el)),this.tabs.add({id:"main",title:"Start",$el:p}),this.settings=new a(this.app),this.tabs.add({id:"settings",title:"Configuration",$el:this.settings.$el}),this.portlet.append(this.tabs.$el),this.setElement(this.portlet.$el),this.tabs.hideOperation("back");var u=this;this.chart.on("change:title",function(e){u._refreshTitle()}),this.chart.on("change:type",function(e){u.table.value(e.get("type"))}),this.chart.on("reset",function(e){u._resetChart()}),this.app.chart.on("redraw",function(e){u.portlet.showOperation("back")}),this.app.chart.groups.on("add",function(e){u._addGroup(e)}),this.app.chart.groups.on("remove",function(e){u._removeGroup(e)}),this.app.chart.groups.on("reset",function(e){u._removeAllGroups()}),this.app.chart.groups.on("change:key",function(e){u._refreshGroupKey()}),this._resetChart()},show:function(){this.$el.show()},hide:function(){this.$el.hide()},_refreshTitle:function(){var e=this.chart.get("title");e&&(e=" - "+e),this.portlet.title("Charts"+e)},_refreshGroupKey:function(){var e=this,t=0;this.chart.groups.each(function(n){var r=n.get("key","");r==""&&(r="Chart data"),e.tabs.title(n.id,++t+": "+r)})},_addGroupModel:function(){var e=new o({id:i.uuid()});return this.chart.groups.add(e),e},_addGroup:function(e){var t=this,n=new u(this.app,{group:e}),r=t.chart.groups.length;this.tabs.add({id:e.id,$el:n.$el,ondel:function(){t.chart.groups.remove(e.id)}}),this._refreshGroupKey()},_removeGroup:function(e){this.tabs.del(e.id),this._refreshGroupKey()},_removeAllGroups:function(e){this.tabs.delRemovable()},_resetChart:function(){this.chart.set("id",i.uuid()),this.chart.set("type","bardiagram"),this.chart.set("dataset_id",this.app.options.config.dataset_id),this.chart.set("title","New Chart"),this.portlet.hideOperation("back")},_saveChart:function(){this.chart.set({type:this.table.value(),title:this.title.value(),date:i.time()}),this.chart.groups.length==0&&this._addGroupModel(),this.chart.trigger("redraw"),this.app.storage.save()}})}),define("plugin/models/config",[],function(){return Backbone.Model.extend({defaults:{query_limit:1e3,query_timeout:500}})}),define("plugin/charts/_nvd3/config",[],function(){return{title:"",columns:{y:{title:"Values for y-axis"}},settings:{separator_label:{title:"X axis",type:"separator"},x_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"X-axis",placeholder:"Axis label"},x_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"f",data:[{label:"-- Do not show values --",value:"hide"},{label:"Float",value:"f"},{label:"Exponent",value:"e"},{label:"Integer",value:"d"},{label:"Percentage",value:"p"},{label:"Rounded",value:"r"},{label:"SI-prefix",value:"s"}]},x_axis_tick:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:".1",data:[{label:"0.00001",value:".5"},{label:"0.0001",value:".4"},{label:"0.001",value:".3"},{label:"0.01",value:".2"},{label:"0.1",value:".1"},{label:"1",value:"1"}]},separator_tick:{title:"Y axis",type:"separator"},y_axis_label:{title:"Axis label",info:"Provide a label for the axis.",type:"text",init:"Y-axis",placeholder:"Axis label"},y_axis_type:{title:"Axis value type",info:"Select the value type of the axis.",type:"select",init:"f",data:[{label:"-- Do not show values --",value:"hide"},{label:"Float",value:"f"},{label:"Exponent",value:"e"},{label:"Integer",value:"d"},{label:"Percentage",value:"p"},{label:"Rounded",value:"r"},{label:"SI-prefix",value:"s"}]},y_axis_tick:{title:"Axis tick format",info:"Select the tick format for the axis.",type:"select",init:".1",data:[{label:"0.00001",value:".5"},{label:"0.0001",value:".4"},{label:"0.001",value:".3"},{label:"0.01",value:".2"},{label:"0.1",value:".1"},{label:"1",value:"1"}]},separator_legend:{title:"Others",type:"separator"},show_legend:{title:"Show legend",info:"Would you like to add a legend?",type:"select",init:"true",data:[{label:"Yes",value:"true"},{label:"No",value:"false"}]}}}}),define("plugin/charts/bardiagram/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Bar diagram"})}),define("plugin/charts/histogram/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Histogram",execute:!0,columns:{y:{title:"Observations"}},settings:{x_axis_label:{init:"Breaks"},y_axis_label:{init:"Density"},y_axis_tick:{init:".3"}}})}),define("plugin/charts/horizontal/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Bar diagram (horizontal)",settings:{x_axis_type:{init:"hide"}}})}),define("plugin/charts/line/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Line chart"})}),define("plugin/charts/linewithfocus/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Line with focus"})}),define("plugin/charts/piechart/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Pie chart"})}),define("plugin/charts/scatterplot/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Scatter plot",columns:{x:{title:"Values for x-axis"}}})}),define("plugin/charts/stackedarea/config",["plugin/charts/_nvd3/config"],function(e){return $.extend(!0,{},e,{title:"Stacked area"})}),define("plugin/charts/types",["plugin/charts/bardiagram/config","plugin/charts/histogram/config","plugin/charts/horizontal/config","plugin/charts/line/config","plugin/charts/linewithfocus/config","plugin/charts/piechart/config","plugin/charts/scatterplot/config","plugin/charts/stackedarea/config"],function(e,t,n,r,i,s,o,u){return Backbone.Model.extend({defaults:{bardiagram:e,horizontal:n,histogram:t,line:r,linewithfocus:i,piechart:s,scatterplot:o,stackedarea:u}})}),define("plugin/app",["mvc/ui/ui-modal","mvc/ui/ui-portlet","plugin/library/ui","utils/utils","plugin/library/jobs","plugin/library/datasets","plugin/library/storage","plugin/views/viewer","plugin/views/editor","plugin/models/config","plugin/models/chart","plugin/charts/types"],function(e,t,n,r,i,s,o,u,a,f,l,c){return Backbone.View.extend({initialize:function(t){this.options=t,Galaxy&&Galaxy.modal?this.modal=Galaxy.modal:this.modal=new e.View,this.config=new f,this.types=new c,this.chart=new l,this.jobs=new i(this),this.datasets=new s(this),this.storage=new o(this),this.viewer_view=new u(this),this.editor_view=new a(this),this.$el.append(this.viewer_view.$el),this.$el.append(this.editor_view.$el),this.storage.load()?(this.go("viewer"),this.chart.trigger("redraw")):this.go("editor")},go:function(e){$(".tooltip").hide();switch(e){case"editor":this.editor_view.show(),this.viewer_view.hide();break;case"viewer":this.editor_view.hide(),this.viewer_view.show()}},execute:function(e){},onunload:function(){},log:function(e,t){console.log(e+" "+t)}})}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/library/storage.js --- /dev/null +++ b/config/plugins/visualizations/charts/static/library/storage.js @@ -0,0 +1,118 @@ +// dependencies +define(['utils/utils', 'plugin/models/chart', 'plugin/models/group'], function(Utils, Chart, Group) { + +// collection +return Backbone.Model.extend( +{ + // viz model + vis: null, + + // initialize + initialize: function(app) { + // link app + this.app = app; + + // link chart + this.chart = this.app.chart; + + // link options + this.options = this.app.options; + + // initialize parameters + this.id = this.options.id; + + // create visualization + this.vis = new Visualization({ + type : 'charts', + config : { + dataset_id : this.options.config.dataset_id, + chart_dict : {} + } + }); + + // add visualization id + if (this.id) { + this.vis.id = this.id; + } + + // add charts + var chart_dict = this.options.config.chart_dict; + if (chart_dict) { + this.vis.get('config').chart_dict = chart_dict; + } + }, + + // pack and save nested chart model + save: function() { + + // link chart + var chart = this.app.chart; + + // reset + this.vis.get('config').chart_dict = {}; + + // set title + var title = chart.get('title'); + if (title != '') { + this.vis.set('title', title); + } + + // create chart dictionary + var chart_dict = { + attributes : chart.attributes, + settings : chart.settings.attributes, + groups : [] + }; + + // append groups + chart.groups.each(function(group) { + chart_dict.groups.push(group.attributes); + }); + + // add chart to charts array + this.vis.get('config').chart_dict = chart_dict; + + // save visualization + var self = this; + this.vis.save() + .fail(function(xhr, status, message) { + console.error(xhr, status, message); + alert( 'Error loading data:\n' + xhr.responseText ); + }) + .then(function(response) { + if (response && response.id) { + self.id = response.id; + } + }); + }, + + // load nested models/collections from packed dictionary + load: function() { + // get charts array + var chart_dict = this.vis.get('config').chart_dict; + + // check + if (!chart_dict.attributes) { + return false; + } + + // main + this.chart.set(chart_dict.attributes); + + // get settings + this.chart.settings.set(chart_dict.settings); + + // get groups + for (var j in chart_dict.groups) { + this.chart.groups.add(new Group(chart_dict.groups[j])); + } + + // reset status + this.chart.state('ok', 'Loaded previously saved visualization.'); + + // return + return true; + } +}); + +}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/models/charts.js --- a/config/plugins/visualizations/charts/static/models/charts.js +++ /dev/null @@ -1,114 +0,0 @@ -// dependencies -define(['plugin/models/chart', 'plugin/models/group'], function(Chart, Group) { - -// collection -return Backbone.Collection.extend( -{ - // nested chart model contains collections - model : Chart, - - // viz model - vis: null, - - // initialize - initialize: function(options, app) { - // initialize parameters - this.app = app; - this.id = this.app.options.id; - - // create visualization - this.vis = new Visualization({ - type : 'charts', - config : { - dataset_id : this.app.options.config.dataset_id, - charts : [] - } - }); - - // add visualization id - if (this.id) { - this.vis.id = this.id; - } - - // add charts - var charts_array = this.app.options.config.charts; - if (charts_array) { - this.vis.get('config').charts = charts_array; - } - }, - - // pack and save nested chart models - save: function() { - // reset - this.vis.get('config').charts = []; - - // pack nested chart models into arrays attributes - var self = this; - this.each(function(chart) { - // create chart dictionary - var chart_dict = { - attributes : chart.attributes, - settings : chart.settings.attributes, - groups : [] - }; - - // append groups - chart.groups.each(function(group) { - chart_dict.groups.push(group.attributes); - }); - - // add chart to charts array - self.vis.get('config').charts.push(chart_dict); - }); - - // save visualization - var self = this; - this.vis.save() - .fail(function(xhr, status, message) { - console.error(xhr, status, message); - alert( 'Error loading data:\n' + xhr.responseText ); - }) - .then(function(response) { - if (response && response.id) { - self.id = response.id; - } - }); - }, - - // load nested models/collections from packed dictionary - load: function() { - // get charts array - var charts_array = this.vis.get('config').charts; - - // unpack chart models - for (var i in charts_array) { - // get chart details - var chart_dict = charts_array[i]; - - // construct chart model - var chart = new Chart(); - - // main - chart.set(chart_dict.attributes); - - // get settings - chart.settings.set(chart_dict.settings); - - // get groups - for (var j in chart_dict.groups) { - chart.groups.add(new Group(chart_dict.groups[j])); - } - - // reset status - chart.state('ok', 'Loaded previously saved visualization.'); - - // add to collection - this.add(chart); - - // trigger - chart.trigger('redraw', chart); - } - } -}); - -}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/models/config.js --- a/config/plugins/visualizations/charts/static/models/config.js +++ b/config/plugins/visualizations/charts/static/models/config.js @@ -7,8 +7,7 @@ // options defaults : { query_limit : 1000, - query_timeout : 500, - title : 'Create a new chart' + query_timeout : 500 } }); diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/views/chart.js --- a/config/plugins/visualizations/charts/static/views/chart.js +++ /dev/null @@ -1,321 +0,0 @@ -// dependencies -define(['mvc/ui/ui-tabs', 'plugin/library/ui-table', 'plugin/library/ui', 'utils/utils', - 'plugin/models/chart', 'plugin/models/group', - 'plugin/views/group', 'plugin/views/settings'], - function(Tabs, Table, Ui, Utils, Chart, Group, GroupView, SettingsView) { - -// widget -return Backbone.View.extend( -{ - // defaults options - optionsDefault: { - header : true, - content : 'No content available.' - }, - - // initialize - initialize: function(app, options) - { - // link application - this.app = app; - - // get current chart object - this.chart = this.app.chart; - - // configure options - this.options = Utils.merge(options, this.optionsDefault); - - // - // table with chart types - // - var self = this; - this.table = new Table.View({ - header : false, - onconfirm : function(type) { - if (self.chart.groups.length > 0) { - // show modal - self.app.modal.show({ - title : 'Switching to another chart type?', - body : 'If you continue your settings and selections will be cleared.', - buttons : { - 'Cancel' : function() { - // hide modal - self.app.modal.hide(); - }, - 'Continue' : function() { - // hide modal - self.app.modal.hide(); - - // confirm - self.table.value(type); - } - } - }); - } else { - // confirm - self.table.value(type); - } - }, - onchange : function(type) { - // reset type relevant chart content - self.chart.groups.reset(); - self.chart.settings.clear(); - - // update chart type - self.chart.set({type: type}); - }, - ondblclick : function(chart_id) { - self.tabs.show('settings'); - }, - content: 'No chart types available' - }); - - // load chart types into table - var types_n = 0; - var types = app.types.attributes; - for (var id in types){ - var chart_type = types[id]; - this.table.add (++types_n + '.'); - if (chart_type.execute) { - this.table.add(chart_type.title + ' (requires processing)'); - } else { - this.table.add (chart_type.title); - } - this.table.append(id); - } - - // - // tabs - // - this.tabs = new Tabs.View({ - title_new : 'Add Data', - onnew : function() { - var group = self._addGroupModel(); - self.tabs.show(group.id); - }, - operations : { - 'save' : new Ui.ButtonIcon({ - icon : 'fa-save', - tooltip : 'Draw Chart', - title : 'Draw', - onclick : function() { - // show charts - self.app.go('charts_view'); - - // save chart - self._saveChart(); - } - }), - 'back' : new Ui.ButtonIcon({ - icon : 'fa-caret-left', - tooltip : 'Return to Viewer', - title : 'Return', - onclick : function() { - self.app.go('charts_view'); - } - }) - } - }); - - // - // main/default tab - // - - // construct elements - this.title = new Ui.Input({ - placeholder: 'Chart title', - onchange: function() { - self.app.config.set('title', self.title.value()); - } - }); - - // append element - var $main = $('<div/>'); - $main.append(Utils.wrap((new Ui.Label({ title : 'Provide a chart title:'})).$el)); - $main.append(Utils.wrap(this.title.$el)); - $main.append(Utils.wrap((new Ui.Label({ title : 'Select a chart type:'})).$el)); - $main.append(Utils.wrap(this.table.$el)); - - // add tab - this.tabs.add({ - id : 'main', - title : 'Start', - $el : $main - }); - - // - // main settings tab - // - - // create settings view - this.settings = new SettingsView(this.app); - - // add tab - this.tabs.add({ - id : 'settings', - title : 'Configuration', - $el : this.settings.$el - }); - - // elements - this.setElement(this.tabs.$el); - - // hide back button on startup - this.tabs.hideOperation('back'); - - // chart events - var self = this; - this.chart.on('change:title', function(chart) { - self.title.value(chart.get('title')); - self.app.config.set('title', chart.get('title')); - }); - this.chart.on('change:type', function(chart) { - self.table.value(chart.get('type')); - }); - this.chart.on('reset', function(chart) { - self._resetChart(); - }); - - // charts events - this.app.charts.on('add', function(chart) { - self.tabs.showOperation('back'); - }); - this.app.charts.on('remove', function(chart) { - if (self.app.charts.length == 0) { - self.tabs.hideOperation('back'); - } - }); - this.app.charts.on('reset', function(chart) { - self.tabs.hideOperation('back'); - }); - - // groups events - this.app.chart.groups.on('add', function(group) { - self._addGroup(group); - }); - this.app.chart.groups.on('remove', function(group) { - self._removeGroup(group); - }); - this.app.chart.groups.on('reset', function(group) { - self._removeAllGroups(); - }); - this.app.chart.groups.on('change:key', function(group) { - self._refreshGroupKey(); - }); - - // reset - this._resetChart(); - }, - - // hide - show: function() { - this.$el.show(); - }, - - // hide - hide: function() { - $('.tooltip').hide(); - this.$el.hide(); - }, - - // update - _refreshGroupKey: function() { - var self = this; - var counter = 0; - this.chart.groups.each(function(group) { - var title = group.get('key', ''); - if (title == '') { - title = 'Chart data'; - } - self.tabs.title(group.id, ++counter + ': ' + title); - }); - }, - - // new group - _addGroupModel: function() { - var group = new Group({ - id : Utils.uuid() - }); - this.chart.groups.add(group); - return group; - }, - - // add group - _addGroup: function(group) { - // link this - var self = this; - - // create view - var group_view = new GroupView(this.app, {group: group}); - - // number of groups - var count = self.chart.groups.length; - - // add new tab - this.tabs.add({ - id : group.id, - $el : group_view.$el, - ondel : function() { - self.chart.groups.remove(group.id); - } - }); - - // update titles - this._refreshGroupKey(); - }, - - // remove group - _removeGroup: function(group) { - this.tabs.del(group.id); - - // update titles - this._refreshGroupKey(); - }, - - // remove group - _removeAllGroups: function(group) { - this.tabs.delRemovable(); - }, - - // reset - _resetChart: function() { - // reset chart details - this.chart.set('id', Utils.uuid()); - this.chart.set('type', 'bardiagram'); - this.chart.set('dataset_id', this.app.options.config.dataset_id); - this.chart.set('title', 'New Chart'); - }, - - // create chart - _saveChart: function() { - // update chart data - this.chart.set({ - type : this.table.value(), - title : this.title.value(), - date : Utils.time() - }); - - // ensure that data group is available - if (this.chart.groups.length == 0) { - this._addGroupModel(); - } - - // create/get chart - var current = this.app.charts.get(this.chart.id); - if (!current) { - current = this.chart.clone(); - current.copy(this.chart); - this.app.charts.add(current); - } else { - current.copy(this.chart); - } - - // trigger redraw - current.trigger('redraw', current); - - // save - this.app.charts.save(); - } -}); - -}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/views/charts.js --- a/config/plugins/visualizations/charts/static/views/charts.js +++ /dev/null @@ -1,227 +0,0 @@ -// dependencies -define(['mvc/ui/ui-portlet', 'plugin/library/ui-table', 'plugin/library/ui', 'utils/utils', 'plugin/models/group', 'plugin/views/viewport',], function(Portlet, Table, Ui, Utils, Group, ViewportView) { - -// widget -return Backbone.View.extend( -{ - // initialize - initialize: function(app, options) - { - // link app - this.app = app; - - // create viewport - this.viewport_view = new ViewportView(app); - - // table - this.table = new Table.View({ - content : 'Add charts to this table.', - ondblclick : function(chart_id) { - // attempt to load chart editor - self._showChartView(chart_id); - }, - onchange : function(chart_id) { - // get chart - var chart = self.app.charts.get(chart_id); - - // update main title - self.app.config.set('title', chart.get('title')); - - // show viewport - self.viewport_view.showChart(chart_id); - } - }); - - // add table to portlet - var self = this; - this.portlet = new Portlet.View({ - icon : 'fa-list', - title : 'List of created charts:', - height : 100, - operations : { - 'new' : new Ui.ButtonIcon({ - icon : 'fa-magic', - tooltip : 'Create a new Chart', - title : 'New', - onclick : function() { - self.app.go('chart_view'); - self.app.chart.reset(); - } - }), - 'edit' : new Ui.ButtonIcon({ - icon : 'fa-gear', - tooltip : 'Customize this Chart', - title : 'Customize', - onclick : function() { - // check if element has been selected - var chart_id = self.table.value(); - if (!chart_id) { - return; - } - - // attempt to load chart editor - self._showChartView(chart_id); - } - }), - 'delete' : new Ui.ButtonIcon({ - icon : 'fa-trash-o', - tooltip : 'Delete this Chart', - title : 'Delete', - onclick : function() { - - // check if element has been selected - var chart_id = self.table.value(); - if (!chart_id) { - return; - } - - // title - var chart = self.app.charts.get(chart_id); - - // make sure that chart is ready - self._wait (chart, function() { - self.app.modal.show({ - title : 'Are you sure?', - body : 'The selected chart "' + chart.get('title') + '" will be irreversibly deleted.', - buttons : { - 'Cancel' : function() {self.app.modal.hide();}, - 'Delete' : function() { - // hide modal - self.app.modal.hide(); - - // remove chart - self.app.charts.remove(chart_id); - - // cleanup - self.app.jobs.cleanup(chart); - } - } - }); - }); - } - }), - } - }); - this.portlet.append(this.table.$el); - - // append portlet with table - if (!this.app.options.config.widget) { - this.$el.append(this.portlet.$el); - } - - // append view port - this.$el.append(Utils.wrap('')); - this.$el.append(this.viewport_view.$el); - - // events - var self = this; - this.app.charts.on('add', function(chart) { - // add - self._addChart(chart); - }); - this.app.charts.on('remove', function(chart) { - // remove - self._removeChart(chart); - }); - this.app.charts.on('change', function(chart) { - // replace - self._changeChart(chart); - }); - }, - - // show - show: function() { - this.$el.show(); - }, - - // hide - hide: function() { - $('.tooltip').hide(); - this.$el.hide(); - }, - - // add - _addChart: function(chart) { - // add title to table - var title = chart.get('title'); - if (title == '') { - title = 'Untitled'; - } - this.table.add(title); - - // get chart type - var type = this.app.types.get(chart.get('type')); - this.table.add(type.title); - - // add additional columns - this.table.add('Last change: ' + chart.get('date')); - this.table.prepend(chart.get('id')); - this.table.value(chart.get('id')); - }, - - // remove - _removeChart: function(chart) { - // remove from to table - this.table.remove(chart.id); - - // save - this.app.charts.save(); - - // check if table is empty - if (this.table.size() == 0) { - this.app.go('chart_view'); - this.app.chart.reset(); - } else { - // select available chart - this.table.value(this.app.charts.last().id); - } - }, - - // change - _changeChart: function(chart) { - if (chart.get('type')) { - // add chart - this._addChart(chart); - - // select available chart - this.table.value(chart.id); - } - }, - - // show chart editor - _showChartView: function(chart_id) { - var self = this; - var chart = this.app.charts.get(chart_id); - this._wait (chart, function() { - self.app.go('chart_view'); - self.app.chart.copy(chart); - }); - }, - - // wait for chart to be ready - _wait: function(chart, callback) { - // get chart - if (chart.ready()) { - callback(); - } else { - // show modal - var self = this; - this.app.modal.show({ - title : 'Please wait!', - body : 'The selected chart "' + chart.get('title') + '" is currently being processed. Please wait...', - buttons : { - 'Close' : function() {self.app.modal.hide();}, - 'Retry' : function() { - // hide modal - self.app.modal.hide(); - - // retry - setTimeout(function() { self._wait(chart, callback); }, self.app.config.get('query_timeout')); - } - } - }); - } - } -}); - -}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/views/editor.js --- /dev/null +++ b/config/plugins/visualizations/charts/static/views/editor.js @@ -0,0 +1,324 @@ +// dependencies +define(['mvc/ui/ui-tabs', 'plugin/library/ui-table', 'plugin/library/ui', 'mvc/ui/ui-portlet', 'utils/utils', + 'plugin/models/chart', 'plugin/models/group', + 'plugin/views/group', 'plugin/views/settings'], + function(Tabs, Table, Ui, Portlet, Utils, Chart, Group, GroupView, SettingsView) { + +// widget +return Backbone.View.extend( +{ + // defaults options + optionsDefault: { + header : true, + content : 'No content available.' + }, + + // initialize + initialize: function(app, options) + { + // link application + this.app = app; + + // get current chart object + this.chart = this.app.chart; + + // configure options + this.options = Utils.merge(options, this.optionsDefault); + + // create portlet + this.portlet = new Portlet.View({ + icon : 'fa-bar-chart-o', + title: 'Editor', + operations : { + 'save' : new Ui.ButtonIcon({ + icon : 'fa-save', + tooltip : 'Draw Chart', + title : 'Draw', + onclick : function() { + // show viewport + self.app.go('viewer'); + + // save chart + self._saveChart(); + } + }), + 'back' : new Ui.ButtonIcon({ + icon : 'fa-caret-left', + tooltip : 'Return to Viewer', + title : 'Return', + onclick : function() { + // show viewport + self.app.go('viewer'); + + // reset chart + self.app.storage.load(); + } + }) + } + }); + + // + // table with chart types + // + var self = this; + this.table = new Table.View({ + header : false, + onconfirm : function(type) { + if (self.chart.groups.length > 0) { + // show modal + self.app.modal.show({ + title : 'Switching to another chart type?', + body : 'If you continue your settings and selections will be cleared.', + buttons : { + 'Cancel' : function() { + // hide modal + self.app.modal.hide(); + }, + 'Continue' : function() { + // hide modal + self.app.modal.hide(); + + // confirm + self.table.value(type); + } + } + }); + } else { + // confirm + self.table.value(type); + } + }, + onchange : function(type) { + // reset type relevant chart content + self.chart.groups.reset(); + self.chart.settings.clear(); + + // update chart type + self.chart.set({type: type}); + }, + ondblclick : function(chart_id) { + self.tabs.show('settings'); + }, + content: 'No chart types available' + }); + + // load chart types into table + var types_n = 0; + var types = app.types.attributes; + for (var id in types){ + var chart_type = types[id]; + this.table.add (++types_n + '.'); + if (chart_type.execute) { + this.table.add(chart_type.title + ' (requires processing)'); + } else { + this.table.add (chart_type.title); + } + this.table.append(id); + } + + // + // tabs + // + this.tabs = new Tabs.View({ + title_new : 'Add Data', + onnew : function() { + var group = self._addGroupModel(); + self.tabs.show(group.id); + } + }); + + // + // main/default tab + // + + // construct elements + this.title = new Ui.Input({ + placeholder: 'Chart title', + onchange: function() { + self.app.config.set('title', self.title.value()); + } + }); + + // append element + var $main = $('<div/>'); + $main.append(Utils.wrap((new Ui.Label({ title : 'Provide a chart title:'})).$el)); + $main.append(Utils.wrap(this.title.$el)); + $main.append(Utils.wrap((new Ui.Label({ title : 'Select a chart type:'})).$el)); + $main.append(Utils.wrap(this.table.$el)); + + // add tab + this.tabs.add({ + id : 'main', + title : 'Start', + $el : $main + }); + + // + // main settings tab + // + + // create settings view + this.settings = new SettingsView(this.app); + + // add tab + this.tabs.add({ + id : 'settings', + title : 'Configuration', + $el : this.settings.$el + }); + + // append tabs + this.portlet.append(this.tabs.$el); + + // elements + this.setElement(this.portlet.$el); + + // hide back button on startup + this.tabs.hideOperation('back'); + + // chart events + var self = this; + this.chart.on('change:title', function(chart) { + self._refreshTitle(); + }); + this.chart.on('change:type', function(chart) { + self.table.value(chart.get('type')); + }); + this.chart.on('reset', function(chart) { + self._resetChart(); + }); + this.app.chart.on('redraw', function(chart) { + self.portlet.showOperation('back'); + }); + + // groups events + this.app.chart.groups.on('add', function(group) { + self._addGroup(group); + }); + this.app.chart.groups.on('remove', function(group) { + self._removeGroup(group); + }); + this.app.chart.groups.on('reset', function(group) { + self._removeAllGroups(); + }); + this.app.chart.groups.on('change:key', function(group) { + self._refreshGroupKey(); + }); + + // reset + this._resetChart(); + }, + + // hide + show: function() { + this.$el.show(); + }, + + // hide + hide: function() { + this.$el.hide(); + }, + + // refresh title + _refreshTitle: function() { + var title = this.chart.get('title'); + if (title) { + title = ' - ' + title; + } + this.portlet.title('Charts' + title); + }, + + // update + _refreshGroupKey: function() { + var self = this; + var counter = 0; + this.chart.groups.each(function(group) { + var title = group.get('key', ''); + if (title == '') { + title = 'Chart data'; + } + self.tabs.title(group.id, ++counter + ': ' + title); + }); + }, + + // new group + _addGroupModel: function() { + var group = new Group({ + id : Utils.uuid() + }); + this.chart.groups.add(group); + return group; + }, + + // add group + _addGroup: function(group) { + // link this + var self = this; + + // create view + var group_view = new GroupView(this.app, {group: group}); + + // number of groups + var count = self.chart.groups.length; + + // add new tab + this.tabs.add({ + id : group.id, + $el : group_view.$el, + ondel : function() { + self.chart.groups.remove(group.id); + } + }); + + // update titles + this._refreshGroupKey(); + }, + + // remove group + _removeGroup: function(group) { + this.tabs.del(group.id); + + // update titles + this._refreshGroupKey(); + }, + + // remove group + _removeAllGroups: function(group) { + this.tabs.delRemovable(); + }, + + // reset + _resetChart: function() { + // reset chart details + this.chart.set('id', Utils.uuid()); + this.chart.set('type', 'bardiagram'); + this.chart.set('dataset_id', this.app.options.config.dataset_id); + this.chart.set('title', 'New Chart'); + + // reset back button + this.portlet.hideOperation('back'); + }, + + // create chart + _saveChart: function() { + // update chart data + this.chart.set({ + type : this.table.value(), + title : this.title.value(), + date : Utils.time() + }); + + // ensure that data group is available + if (this.chart.groups.length == 0) { + this._addGroupModel(); + } + + // trigger redraw + this.chart.trigger('redraw'); + + // save + this.app.storage.save(); + } +}); + +}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/views/viewer.js --- /dev/null +++ b/config/plugins/visualizations/charts/static/views/viewer.js @@ -0,0 +1,106 @@ +// dependencies +define(['utils/utils', 'plugin/library/ui', 'mvc/ui/ui-portlet', + 'plugin/models/group', 'plugin/views/viewport',], + function(Utils, Ui, Portlet, Group, ViewportView) { + +// widget +return Backbone.View.extend( +{ + // initialize + initialize: function(app, options) + { + // link app + this.app = app; + + // link chart + this.chart = this.app.chart; + + // create viewport + this.viewport_view = new ViewportView(app); + + // link this + var self = this; + + // create portlet + this.portlet = new Portlet.View({ + icon : 'fa-bar-chart-o', + title: 'Viewport', + operations: { + edit_button: new Ui.ButtonIcon({ + icon : 'fa-gear', + tooltip : 'Customize Chart', + title : 'Customize', + onclick : function() { + // attempt to load chart editor + self._wait (self.app.chart, function() { + self.app.go('editor'); + }); + } + }) + + } + }); + + // append view port + this.portlet.append(this.viewport_view.$el); + + // set element + this.setElement(this.portlet.$el); + + // events + var self = this; + this.chart.on('change:title', function() { + self._refreshTitle(); + }); + }, + + // show + show: function() { + // show element + this.$el.show(); + + // trigger resize to refresh d3 element + $(window).trigger('resize'); + }, + + // hide + hide: function() { + this.$el.hide(); + }, + + // refresh title + _refreshTitle: function() { + var title = this.chart.get('title'); + if (title) { + title = ' - ' + title; + } + this.portlet.title('Charts' + title); + }, + + // wait for chart to be ready + _wait: function(chart, callback) { + // get chart + if (chart.ready()) { + callback(); + } else { + // show modal + var self = this; + this.app.modal.show({ + title : 'Please wait!', + body : 'Your chart is currently being processed. Please wait...', + buttons : { + 'Close' : function() {self.app.modal.hide();}, + 'Retry' : function() { + // hide modal + self.app.modal.hide(); + + // retry + setTimeout(function() { self._wait(chart, callback); }, self.app.config.get('query_timeout')); + } + } + }); + } + } +}); + +}); \ No newline at end of file diff -r e7dfb71eeb796d0cf560ffa48445d243aeb37a67 -r fa0968cfe3c3fec5869168bd7dd68829024f1ec3 config/plugins/visualizations/charts/static/views/viewport.js --- a/config/plugins/visualizations/charts/static/views/viewport.js +++ b/config/plugins/visualizations/charts/static/views/viewport.js @@ -5,14 +5,8 @@ // widget return Backbone.View.extend( { - // list - list: {}, - - // options - optionsDefault : - { - height : 300 - }, + // height + height : 300, // initialize initialize: function(app, options) @@ -20,117 +14,63 @@ // link app this.app = app; + // link chart + this.chart = this.app.chart; + // link options this.options = Utils.merge(options, this.optionsDefault); - // add table to portlet - this.portlet = new Portlet.View({ - title : 'title', - height : this.options.height, - overflow : 'hidden' - }); - - // set this element - this.setElement(this.portlet.$el); + // create element + this.setElement($(this._template())); // events var self = this; - - // remove - this.app.charts.on('remove', function(chart) { - self._removeChart(chart.id); - }); - - // redraw - this.app.charts.on('redraw', function(chart) { - self._drawChart(chart); + this.chart.on('redraw', function() { + self._draw(self.chart); }); }, // show - showChart: function(chart_id) { - // show - this.show(); - - // hide all - this.hideCharts(); - - // identify selected item from list - var item = this.list[chart_id]; - if (item) { - // get chart - var chart = this.app.charts.get(chart_id); - - // update portlet - this.portlet.title(chart.get('title')); - - // show selected chart - item.$el.show(); - - // this trigger d3 update events - $(window).trigger('resize'); - } - }, - - // hide charts - hideCharts: function() { - this.$el.find('.item').hide(); - }, - - // show show: function() { - $('.tooltip').hide(); this.$el.show(); }, // hide hide: function() { - $('.tooltip').hide(); this.$el.hide(); }, // add - _drawChart: function(chart) { + _draw: function(chart) { // link this var self = this; // check if (!chart.ready()) { - self.app.log('viewport:_drawChart()', 'Invalid attempt to draw chart before completion.'); + this.app.log('viewport:_drawChart()', 'Invalid attempt to draw chart before completion.'); return; } - - // backup chart details - var chart_id = chart.id; - - // make sure that svg does not exist already - this._removeChart(chart_id); - - // create id - var id = '#' + chart_id; - // create element - var $chart_el = $(this._template({id: id})); + // clear svg + if (this.svg) { + this.svg.remove(); + } - // add to portlet - this.portlet.append($chart_el); + // create + this.svg = document.createElementNS('http://www.w3.org/2000/svg', 'svg'); + this.svg.setAttribute('height', this.height); + this.$el.append(this.svg); // find svg element - var svg = d3.select($chart_el.find('svg')[0]); - - // add chart to list - this.list[chart_id] = { - svg : svg, - $el : $chart_el - } - + this.svg = d3.select(this.$el.find('svg')[0]); + // clear all previous handlers (including redraw listeners) chart.off('change:state'); // link status handler chart.on('change:state', function() { // get info element - var $info = $chart_el.find('#info'); + var $info = self.$el.find('#info'); // get icon var $icon = $info.find('#icon'); @@ -168,7 +108,7 @@ var self = this; require(['plugin/charts/' + chart_type + '/' + chart_type], function(ChartView) { // create chart - var view = new ChartView(self.app, {svg : svg}); + var view = new ChartView(self.app, {svg : self.svg}); // request data if (chart_settings.execute) { @@ -181,31 +121,18 @@ }); }, - // remove - _removeChart: function(id) { - var item = this.list[id]; - if (item) { - // remove svg element - item.svg.remove(); - - // find div element (if any) - item.$el.remove(); - } - }, - // template - _template: function(options) { - return '<div id="' + options.id.substr(1) + '" class="item">' + - '<span id="info">' + + _template: function() { + return '<div>' + + '<div id="info" style="text-align: center; margin-top: 20px;">' + '<span id="icon" style="font-size: 1.2em; display: inline-block;"/>' + '<span id="text" style="position: relative; margin-left: 5px; top: -1px; font-size: 1.0em;"/>' + - '</span>' + - '<svg style="height: auto;"/>' + + '</div>' + '</div>'; }, // create default chart request - _defaultRequestString : function(chart) { + _defaultRequestString: function(chart) { // get chart settings var chart_settings = this.app.types.get(chart.get('type')); @@ -226,7 +153,7 @@ }, // create default chart request - _defaultSettingsString : function(chart) { + _defaultSettingsString: function(chart) { // configure settings var settings_string = ''; @@ -241,7 +168,7 @@ }, // create default chart request - _defaultRequestDictionary : function(chart) { + _defaultRequestDictionary: function(chart) { // get chart settings var chart_settings = this.app.types.get(chart.get('type')); This diff is so big that we needed to truncate the remainder. 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