1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/b6ddc6196429/ changeset: b6ddc6196429 user: jgoecks date: 2012-05-31 01:47:40 summary: Clearer explanation and help for default vs. full parameter settings. affected #: 2 files

diff -r 377e1d1691fc285cbccc94b393ce7ed069956794 -r b6ddc6196429859c887f20c359e0afc463afa229 tools/ngs_rna/tophat_color_wrapper.xml --- a/tools/ngs_rna/tophat_color_wrapper.xml +++ b/tools/ngs_rna/tophat_color_wrapper.xml @@ -179,7 +179,7 @@ <when value="single"><conditional name="sParams"><param name="sSettingsType" type="select" label="TopHat settings to use" help="You can use the default settings or set custom values for any of Tophat's parameters."> - <option value="preSet">Use Defaults</option> + <option value="preSet">Default settings</option><option value="full">Full parameter list</option></param><when value="preSet" /> @@ -284,8 +284,8 @@ <param format="fastqcssanger" name="input2" type="data" label="RNA-Seq FASTQ file" help="Color-space: Must have Sanger-scaled quality values with ASCII offset 33" /><param name="mate_inner_distance" type="integer" value="20" label="Mean Inner Distance between Mate Pairs" /><conditional name="pParams"> - <param name="pSettingsType" type="select" label="TopHat settings to use" help="For most mapping needs use Commonly used settings. If you want full control use Full parameter list"> - <option value="preSet">Commonly used</option> + <param name="pSettingsType" type="select" label="TopHat settings to use" help="Use the Full parameter list to change default settings."> + <option value="preSet">Default settings</option><option value="full">Full parameter list</option></param><when value="preSet" />

diff -r 377e1d1691fc285cbccc94b393ce7ed069956794 -r b6ddc6196429859c887f20c359e0afc463afa229 tools/ngs_rna/tophat_wrapper.xml --- a/tools/ngs_rna/tophat_wrapper.xml +++ b/tools/ngs_rna/tophat_wrapper.xml @@ -175,8 +175,8 @@ </param><when value="single"><conditional name="sParams"> - <param name="sSettingsType" type="select" label="TopHat settings to use" help="You can use the default settings or set custom values for any of Tophat's parameters."> - <option value="preSet">Use Defaults</option> + <param name="sSettingsType" type="select" label="TopHat settings to use" help="Use the Full parameter list to change default settings."> + <option value="preSet">Default settings</option><option value="full">Full parameter list</option></param><when value="preSet" /> @@ -281,8 +281,8 @@ <param format="fastqsanger" name="input2" type="data" label="RNA-Seq FASTQ file" help="Nucleotide-space: Must have Sanger-scaled quality values with ASCII offset 33" /><param name="mate_inner_distance" type="integer" value="20" label="Mean Inner Distance between Mate Pairs" /><conditional name="pParams"> - <param name="pSettingsType" type="select" label="TopHat settings to use" help="For most mapping needs use Commonly used settings. If you want full control use Full parameter list"> - <option value="preSet">Commonly used</option> + <param name="pSettingsType" type="select" label="TopHat settings to use" help="Use the Full parameter list to change default settings."> + <option value="preSet">Default settings</option><option value="full">Full parameter list</option></param><when value="preSet" />

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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