Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 51f63a7d3e545db1e7c89621418523356fb1bdee https://github.com/galaxyproject/galaxy/commit/51f63a7d3e545db1e7c8962141852... Author: John Chilton <jmchilton@gmail.com> Date: 2016-03-31 (Thu, 31 Mar 2016) Changed paths: M .ci/flake8_wrapper.sh M .ci/py3_sources.txt M doc/source/lib/modules.rst R doc/source/lib/pulsar.client.rst R doc/source/lib/pulsar.client.staging.rst R doc/source/lib/pulsar.client.transport.rst R doc/source/lib/pulsar.rst M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt R lib/pulsar/__init__.py R lib/pulsar/client/__init__.py R lib/pulsar/client/action_mapper.py R lib/pulsar/client/amqp_exchange.py R lib/pulsar/client/amqp_exchange_factory.py R lib/pulsar/client/client.py R lib/pulsar/client/config_util.py R lib/pulsar/client/decorators.py R lib/pulsar/client/destination.py R lib/pulsar/client/interface.py R lib/pulsar/client/job_directory.py R lib/pulsar/client/manager.py R lib/pulsar/client/object_client.py R lib/pulsar/client/path_mapper.py R lib/pulsar/client/setup_handler.py R lib/pulsar/client/staging/__init__.py R lib/pulsar/client/staging/down.py R lib/pulsar/client/staging/up.py R lib/pulsar/client/transport/__init__.py R lib/pulsar/client/transport/curl.py R lib/pulsar/client/transport/poster.py R lib/pulsar/client/transport/requests.py R lib/pulsar/client/transport/ssh.py R lib/pulsar/client/transport/standard.py R lib/pulsar/client/util.py Log Message: ----------- Replace embedded Pulsar code with dependency. Pulsar's setup.py has been parameterized to allow it build a special wheel that doesn't depend on galaxy-lib (https://github.com/galaxyproject/pulsar/commit/ce9d4f9e80936407fe4f793afa668...) and instead expects it to come from the environment. This special dependency has been published to PyPI here (https://pypi.python.org/pypi/pulsar-galaxy-lib) and added to StarForge here (https://github.com/galaxyproject/starforge/pull/79). These are now available on wheels.galaxyproject.org. In addition to removing the source dirctories - I have removed doc and CI references to these directories. Commit: 07eb322e8c06e91095fe418c0d71bf725b682db5 https://github.com/galaxyproject/galaxy/commit/07eb322e8c06e91095fe418c0d71b... Author: John Chilton <jmchilton@gmail.com> Date: 2016-03-31 (Thu, 31 Mar 2016) Changed paths: M lib/galaxy/jobs/runners/pulsar.py Log Message: ----------- Fix Pulsar effective working directory for #1688. Commit: 991d7282c7b045edc57710f2acddde9f83816e89 https://github.com/galaxyproject/galaxy/commit/991d7282c7b045edc57710f2acddd... Author: Nate Coraor <nate@bx.psu.edu> Date: 2016-04-01 (Fri, 01 Apr 2016) Changed paths: M .ci/flake8_wrapper.sh M .ci/py3_sources.txt M doc/source/lib/modules.rst R doc/source/lib/pulsar.client.rst R doc/source/lib/pulsar.client.staging.rst R doc/source/lib/pulsar.client.transport.rst R doc/source/lib/pulsar.rst M lib/galaxy/dependencies/pinned-requirements.txt M lib/galaxy/dependencies/requirements.txt M lib/galaxy/jobs/runners/pulsar.py R lib/pulsar/__init__.py R lib/pulsar/client/__init__.py R lib/pulsar/client/action_mapper.py R lib/pulsar/client/amqp_exchange.py R lib/pulsar/client/amqp_exchange_factory.py R lib/pulsar/client/client.py R lib/pulsar/client/config_util.py R lib/pulsar/client/decorators.py R lib/pulsar/client/destination.py R lib/pulsar/client/interface.py R lib/pulsar/client/job_directory.py R lib/pulsar/client/manager.py R lib/pulsar/client/object_client.py R lib/pulsar/client/path_mapper.py R lib/pulsar/client/setup_handler.py R lib/pulsar/client/staging/__init__.py R lib/pulsar/client/staging/down.py R lib/pulsar/client/staging/up.py R lib/pulsar/client/transport/__init__.py R lib/pulsar/client/transport/curl.py R lib/pulsar/client/transport/poster.py R lib/pulsar/client/transport/requests.py R lib/pulsar/client/transport/ssh.py R lib/pulsar/client/transport/standard.py R lib/pulsar/client/util.py Log Message: ----------- Merge pull request #2052 from jmchilton/pulsar-deps Pulsar-As-A-Dependency Compare: https://github.com/galaxyproject/galaxy/compare/a03e64268a9e...991d7282c7b0