1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/24493820b3e3/ Changeset: 24493820b3e3 User: dannon Date: 2014-09-17 20:16:34+00:00 Summary: to_json_string is deprecated and should not be used anymore, replace with dumps in api/lda_datasets Affected #: 1 file diff -r e43bbc51534f807cc8a6966433af9531c36964a4 -r 24493820b3e30418f50b2560cc876b7406c2c4ff lib/galaxy/webapps/galaxy/api/lda_datasets.py --- a/lib/galaxy/webapps/galaxy/api/lda_datasets.py +++ b/lib/galaxy/webapps/galaxy/api/lda_datasets.py @@ -14,7 +14,7 @@ from galaxy.exceptions import ObjectNotFound from galaxy.managers import folders, roles from galaxy.tools.actions import upload_common -from galaxy.util.json import to_json_string +from galaxy.util.json import dumps from galaxy.util.streamball import StreamBall from galaxy.web import _future_expose_api as expose_api from galaxy.web import _future_expose_api_anonymous as expose_api_anonymous @@ -500,8 +500,8 @@ data_list = [ ud.data for ud in abspath_datasets ] job, output = upload_common.create_job( trans, tool_params, tool, json_file_path, data_list, folder=folder ) # HACK: Prevent outputs_to_working_directory from overwriting inputs when "linking" - job.add_parameter( 'link_data_only', to_json_string( kwd.get( 'link_data_only', 'copy_files' ) ) ) - job.add_parameter( 'uuid', to_json_string( kwd.get( 'uuid', None ) ) ) + job.add_parameter( 'link_data_only', dumps( kwd.get( 'link_data_only', 'copy_files' ) ) ) + job.add_parameter( 'uuid', dumps( kwd.get( 'uuid', None ) ) ) trans.sa_session.add( job ) trans.sa_session.flush() job_dict = job.to_dict() Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.