1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/5b27b92310d0/ Changeset: 5b27b92310d0 User: jgoecks Date: 2013-07-01 15:46:09 Summary: Allow spaces and commas in Cuffdiff labels. Affected #: 1 file diff -r 5a73d78e0a4782d9c57d8c1d6cea167e4f4671b6 -r 5b27b92310d044cfd2f9b3711e5ef446048de110 tools/ngs_rna/cuffdiff_wrapper.xml --- a/tools/ngs_rna/cuffdiff_wrapper.xml +++ b/tools/ngs_rna/cuffdiff_wrapper.xml @@ -59,7 +59,9 @@ ## Replicates. --labels #for $group in $group_analysis.groups - "${group.group}" + ## Cuffdiff uses commas as delimiters, so replace them with underscores to avoid + ## parsing problems. + "${group.group.replace(',', '_')}" #end for --files #for $group in $group_analysis.groups @@ -80,7 +82,7 @@ </param><when value="Yes"><repeat name="groups" title="Group"> - <param name="group" title="Group name" type="text" label="Group name (no spaces or commas)"/> + <param name="group" title="Group name" type="text" label="Group name"/><repeat name="files" title="Replicate"><param name="file" label="Add file" type="data" format="sam,bam"/></repeat> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.