commit/galaxy-central: natefoo: Remove incorrect #-S /bin/bash (SGE shell override) from drmaa job runner. If you were depending on this to get jobs to run on your SGE cluster under bash, please add '-S /bin/bash' to your Galaxy user's ~/.sge_request.
1 new changeset in galaxy-central:
http://bitbucket.org/galaxy/galaxy-central/changeset/d711a9201414/ changeset: d711a9201414 user: natefoo date: 2011-10-14 15:58:59 summary: Remove incorrect #-S /bin/bash (SGE shell override) from drmaa job runner. If you were depending on this to get jobs to run on your SGE cluster under bash, please add '-S /bin/bash' to your Galaxy user's ~/.sge_request. affected #: 1 file (-1 bytes)
--- a/lib/galaxy/jobs/runners/drmaa.py Thu Oct 13 16:09:28 2011 -0400 +++ b/lib/galaxy/jobs/runners/drmaa.py Fri Oct 14 09:58:59 2011 -0400 @@ -33,7 +33,6 @@ }
drm_template = """#!/bin/sh -#$ -S /bin/sh GALAXY_LIB="%s" if [ "$GALAXY_LIB" != "None" ]; then if [ -n "$PYTHONPATH" ]; then
Repository URL: https://bitbucket.org/galaxy/galaxy-central/
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