1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/51760f44ba6d/ Changeset: 51760f44ba6d User: natefoo Date: 2013-09-26 14:36:34 Summary: Handle DRM failures in the DRMAA runner. Affected #: 1 file

diff -r ce0b8a3a966d24edd0ba8c7dc51213929c4de75d -r 51760f44ba6d8994c5f46b26f77c9c3a7708b802 lib/galaxy/jobs/runners/drmaa.py --- a/lib/galaxy/jobs/runners/drmaa.py +++ b/lib/galaxy/jobs/runners/drmaa.py @@ -226,7 +226,13 @@ if state == drmaa.JobState.RUNNING and not ajs.running: ajs.running = True ajs.job_wrapper.change_state( model.Job.states.RUNNING ) - if state in ( drmaa.JobState.DONE, drmaa.JobState.FAILED ): + if state == drmaa.JobState.FAILED: + if ajs.job_wrapper.get_state() != model.Job.states.DELETED: + ajs.stop_job = False + ajs.fail_message = "The cluster DRM system terminated this job" + self.work_queue.put( ( self.fail_job, ajs ) ) + continue + if state == drmaa.JobState.DONE: if ajs.job_wrapper.get_state() != model.Job.states.DELETED: self.work_queue.put( ( self.finish_job, ajs ) ) continue

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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