1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/ed5aea827a26/ changeset: r5461:ed5aea827a26 user: kanwei date: 2011-04-27 21:41:25 summary: Fix GTF for trackster affected #: 2 files (226 bytes) --- a/datatypes_conf.xml.sample Wed Apr 27 12:41:57 2011 -0400 +++ b/datatypes_conf.xml.sample Wed Apr 27 15:41:25 2011 -0400 @@ -75,7 +75,10 @@ <datatype extension="gff3" type="galaxy.datatypes.interval:Gff3" display_in_upload="true"/><datatype extension="gif" type="galaxy.datatypes.images:Image" mimetype="image/gif"/><datatype extension="gmaj.zip" type="galaxy.datatypes.images:Gmaj" mimetype="application/zip"/> - <datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true"/> + <datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true"> + <converter file="gff_to_bgzip_converter.xml" target_datatype="bgzip"/> + <converter file="gff_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/> + </datatype><datatype extension="html" type="galaxy.datatypes.images:Html" mimetype="text/html"/><datatype extension="interval" type="galaxy.datatypes.interval:Interval" display_in_upload="true"><converter file="interval_to_bed_converter.xml" target_datatype="bed"/> --- a/lib/galaxy/visualization/tracks/data_providers.py Wed Apr 27 12:41:57 2011 -0400 +++ b/lib/galaxy/visualization/tracks/data_providers.py Wed Apr 27 15:41:25 2011 -0400 @@ -611,7 +611,7 @@ # type. First key is converted dataset type; if result is another dict, second key # is original dataset type. TODO: This needs to be more flexible. dataset_type_name_to_data_provider = { - "tabix": { Vcf: VcfDataProvider, Bed: BedDataProvider, Gff: GffDataProvider, "default" : TabixDataProvider }, + "tabix": { Vcf: VcfDataProvider, Bed: BedDataProvider, Gff: GffDataProvider, Gtf: GffDataProvider, "default" : TabixDataProvider }, "bai": BamDataProvider, "summary_tree": SummaryTreeDataProvider, "bigwig": BigWigDataProvider, Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.