2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/3e211eba99bd/ Changeset: 3e211eba99bd Branch: next-stable User: davebgx Date: 2014-04-04 16:37:52 Summary: Fixed JAVA_JAR_PATH for realigner_target_creator. Affected #: 1 file diff -r aa6203b24be369697fd451e2a8dd45518d39073c -r 3e211eba99bde29b3d4bcf161a041864d2de6905 scripts/migrate_tools/0010_tools.xml --- a/scripts/migrate_tools/0010_tools.xml +++ b/scripts/migrate_tools/0010_tools.xml @@ -84,7 +84,7 @@ <repository owner="devteam" name="rcve" changeset_revision="7740956d197b" description="Compute RCVE"><tool id="rcve1" version="1.0.0" file="regVariation/rcve.xml" /></repository> - <repository owner="devteam" name="realigner_target_creator" changeset_revision="b83a853a3156" description="Realigner Target Creator for use in local realignment"> + <repository owner="devteam" name="realigner_target_creator" changeset_revision="5b8eaae854da" description="Realigner Target Creator for use in local realignment"><tool id="gatk_realigner_target_creator" version="0.0.4" file="gatk/realigner_target_creator.xml" /></repository><repository owner="devteam" name="substitution_rates" changeset_revision="d1b35bcdaacc" description="Estimate substitution rates for non-coding regions"> https://bitbucket.org/galaxy/galaxy-central/commits/d3696e1e6df2/ Changeset: d3696e1e6df2 User: davebgx Date: 2014-04-04 16:38:40 Summary: Merge in fix from next-stable. Affected #: 1 file diff -r 7880ca69b85075ee767406d898ab57511529aba8 -r d3696e1e6df253ac426d7a0576ddf82b596b8b00 scripts/migrate_tools/0010_tools.xml --- a/scripts/migrate_tools/0010_tools.xml +++ b/scripts/migrate_tools/0010_tools.xml @@ -84,7 +84,7 @@ <repository owner="devteam" name="rcve" changeset_revision="7740956d197b" description="Compute RCVE"><tool id="rcve1" version="1.0.0" file="regVariation/rcve.xml" /></repository> - <repository owner="devteam" name="realigner_target_creator" changeset_revision="b83a853a3156" description="Realigner Target Creator for use in local realignment"> + <repository owner="devteam" name="realigner_target_creator" changeset_revision="5b8eaae854da" description="Realigner Target Creator for use in local realignment"><tool id="gatk_realigner_target_creator" version="0.0.4" file="gatk/realigner_target_creator.xml" /></repository><repository owner="devteam" name="substitution_rates" changeset_revision="d1b35bcdaacc" description="Estimate substitution rates for non-coding regions"> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.