galaxy-dist commit a27244147802: Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool. - galaxy-commits

23 Jul 2010

# HG changeset patch -- Bitbucket.org
# Project galaxy-dist
# URL http://bitbucket.org/galaxy/galaxy-dist/overview
# User Dan Blankenberg dan@bx.psu.edu
# Date 1279306372 14400
# Node ID a27244147802bd74be35ae24665cc3fc57580f23
# Parent  11fb3bb5b25058b55d927d4dfb39dab1112f290b
Modify tools contributed by Chungoo Park (cxp440@psu.edu) for Linear Discriminant Analysis, and drawing Receiver Operating Characteristic plots; add a new tool to 'Generate A Matrix for using PC and LDA'; remove redundant 'Principal Component Analysis' tool.

--- a/test-data/pca_for_lda_output.txt.re_match
+++ /dev/null
@@ -1,87 +0,0 @@
-"21.91439361\d*"
-"28.33335569\d*"
-"33.54383183\d*"
-"38.39279966\d*"
-"42.95792886\d*"
-"47.09815550\d*"
-"50.94487376\d*"
-"54.58512629\d*"
-"58.11752456\d*"
-"61.36666878\d*"
-"64.43815007\d*"
-"67.37442210\d*"
-"70.19430653\d*"
-"72.98844264\d*"
-"75.67923231\d*"
-"78.07658354\d*"
-"80.38195983\d*"
-"82.59937656\d*"
-"84.57494344\d*"
-"86.46924307\d*"
-"88.07774382\d*"
-"89.63410862\d*"
-"91.04016474\d*"
-"92.37409738\d*"
-"93.48214466\d*"
-"94.55735875\d*"
-"95.53454224\d*"
-"96.40615879\d*"
-"97.19612900\d*"
-"97.88859479\d*"
-"98.51598802\d*"
-"99.11847048\d*"
-"99.57772251\d*"
-"100"
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--- a/test-data/pca_for_lda_output.txt
+++ /dev/null
@@ -1,87 +0,0 @@
-"21.9143936160079"
-"28.3333556968471"
-"33.5438318357343"
-"38.3927996693607"
-"42.9579288624902"
-"47.0981555066747"
-"50.9448737656701"
-"54.5851262912127"
-"58.117524563425"
-"61.3666687874078"
-"64.4381500783847"
-"67.3744221025279"
-"70.1943065338356"
-"72.9884426407974"
-"75.6792323125723"
-"78.0765835478277"
-"80.381959836786"
-"82.5993765654159"
-"84.5749434452634"
-"86.4692430753353"
-"88.0777438285547"
-"89.6341086298525"
-"91.0401647492736"
-"92.3740973813576"
-"93.4821446651001"
-"94.5573587555456"
-"95.534542246934"
-"96.4061587978985"
-"97.1961290046054"
-"97.888594796593"
-"98.5159880218074"
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--- a/tools/stats/plot_from_lda.xml
+++ b/tools/stats/plot_from_lda.xml
@@ -1,24 +1,24 @@
-<tool id="plot_for_lda_output1" name="Draw ROC">
+<tool id="plot_for_lda_output1" name="Draw ROC" version="1.0.1"><description>Receiver Operating Characteristic plot</description><command interpreter="sh">r_wrapper.sh $script_file</command><inputs>
-		<param format="text" name="input" type="data" label="Source file"/>
-		<param name="my_title" size="30" type="text" value="ROC" label="Title of your plot" help="See syntax below">
-		</param>
-
+		<param format="text" name="input" type="data" label="Source file"></param>
+		<param name="my_title" size="30" type="text" value="My Figure" label="Title of your plot" help="See syntax below"></param>
+		<param name="X_axis" size="30" type="text" value="Text for X axis" label="Legend of X axis in your plot" help="See syntax below"></param>
+		<param name="Y_axis" size="30" type="text" value="Text for Y axis" label="Legend of Y axis in your plot" help="See syntax below"></param></inputs><outputs><data format="pdf" name="pdf_output" />
-        <data format="txt" name="desc_output" /></outputs><tests><test><param name="input" value="lda_analy_output.txt"/>
-			<param name="my_title" value="Test Plot"/>
+			<param name="my_title" value="Test Plot1"/>
+			<param name="X_axis" value="Test Plot2"/>
+			<param name="Y_axis" value="Test Plot3"/><output name="pdf_output" file="plot_for_lda_output.pdf"/>
-			<output name="desc_output" file="empty_file.dat"/></test></tests>
@@ -203,7 +203,7 @@
    for (i in 1:nfiles) {
    	r&lt;-rez_ext[[i]]
    	#tr
-		rate&lt;-rbind(rate, c(files_alias[i]," "," "," ") )
+	#	rate&lt;-rbind(rate, c(files_alias[i]," "," "," ") )
    	mm&lt;-which((r[3,])==max(r[3,]))
m_tr[i]&lt;-mm[1]
@@ -213,9 +213,9 @@
pdf(file= paste("${pdf_output}"))
-	plot(rez_ext[[i]][2,]~rez_ext[[i]][3,], xlim=c(0,100), ylim=c(0,100), xlab="X", ylab="Y", type="l", lty=1, col="blue", xaxt='n', yaxt='n')
+	plot(rez_ext[[i]][2,]~rez_ext[[i]][3,], xlim=c(0,100), ylim=c(0,100), xlab="${X_axis}   [1-FP(False Positive)]", ylab="${Y_axis}   [1-FP(False Positive)]", type="l", lty=1, col="blue", xaxt='n', yaxt='n')
    for (i in 1:nfiles) {
-		lines(rez_ext[[i]][2,]~rez_ext[[i]][3,], xlab="X", ylab="Y", type="l", lty=1, col=i)   
+		lines(rez_ext[[i]][2,]~rez_ext[[i]][3,], xlab="${X_axis}   [1-FP(False Positive)]", ylab="${Y_axis}   [1-FP(False Positive)]", type="l", lty=1, col=i)   
    	# pt=c(r,)
    	points(x=rez_ext[[i]][3,m_tr[i]],y=rez_ext[[i]][2,m_tr[i]], pch=16, col=i)  
    }
@@ -236,27 +236,6 @@
<help>
-.. class:: infomark
-
-**What it does**
-
-This tool consists of the module to perform the Linear Discriminant Analysis as described in Carrel et al., 2006 (PMID: 17009873)
-
-*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human 	Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
-
------
-
-**Example**
-
-- Input file
-
-	A output file from "LDA" tool is used to perform it. 
-
-- Output file
-
-	There are two files produced:
-	(1) A summary file for LDA classification success rates with optimal tau
-	(2) An image file for plot
</help>
Binary file static/images/tools/lda/second_matrix_generator_example_file.png has changed
--- a/test-data/lda_analy_output.txt
+++ b/test-data/lda_analy_output.txt
@@ -1,119 +1,134 @@
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-59.5890410958904, 25, 56.1728395061728, 59.5890410958904, 25, 
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+81.25, 43.6781609195402, 21.8181818181818, 81.25, 43.6781609195402, 
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+81.25, 43.6781609195402, 21.8181818181818, 81.25, 43.6781609195402, 
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+21.8181818181818, 81.25, 43.6781609195402, 21.8181818181818, 
+81.25, 43.6781609195402, 21.8181818181818, 81.25, 43.6781609195402, 
+21.8181818181818, 81.25, 43.6781609195402, 21.8181818181818, 
+81.25, 43.6781609195402, 21.8181818181818, 81.25, 43.6781609195402, 
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+81.25, 43.6781609195402, 21.8181818181818, 81.25, 43.6781609195402, 
+21.8181818181818, 81.25, 43.6781609195402, 21.8181818181818, 
+81.25, 56.3218390804598, 78.1818181818182, 18.75), .Dim = c(3L, 
+201L))
Binary file static/images/tools/lda/first_matrix_generator_example_file.png has changed
Binary file static/images/tools/lda/LDA_Input.png has changed
--- /dev/null
+++ b/tools/stats/generate_matrix_for_pca_lda.xml
@@ -0,0 +1,48 @@
+<tool id="generate_matrix_for_pca_and_lda1" name="Generate A Matrix">
+    <description>for using PC and LDA</description>
+    <command interpreter="perl">generate_matrix_for_pca_lda.pl $input_1 $input_2 $output</command>
+
+    <inputs>
+        <param format="tabular" name="input_1" type="data" label="Source file First: a matrix (samples/observations in rows and variables/features in columns)"></param>
+        <param format="tabular" name="input_2" type="data" label="Source file Second: a table (samples/observations with response/class label)"></param>
+    </inputs>
+
+    <outputs>
+        <data format="tabular" name="output" />
+    </outputs>
+
+    <tests>
+        <test>
+            <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
+            <param name="input_2" value="matrix_generator_for_pc_and_lda_input_2.tabular"/>
+            <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
+        </test>
+    </tests>
+
+    <help>
+
+.. class:: infomark
+
+**What it does**
+
+This tool consists of a module to generate a matrix to be used for running the Linear Discriminant Analysis as described in Carrel et al., 2006 (PMID: 17009873)
+
+*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human     Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
+
+-----
+
+**Example**
+
+- Input file (Source file First)
+
+.. image:: ../static/images/tools/lda/first_matrix_generator_example_file.png
+
+
+- Input file (Source file Second)
+
+.. image:: ../static/images/tools/lda/second_matrix_generator_example_file.png
+
+
+</help>
+
+</tool>
--- /dev/null
+++ b/tools/stats/generate_matrix_for_pca_lda.pl
@@ -0,0 +1,147 @@
+#!/usr/bin/perl -w
+
+use strict;
+use warnings;
+
+my $Input_Matrix = $ARGV[0];
+my $Input_Label = $ARGV[1];
+
+my %Hash_X = ();
+my %Hash_Y = ();
+my $My_Num_X = 0;
+my $My_Num_Y = 0;
+
+open (OUT, "> $ARGV[2]");
+
+open (LABEL, "< $Input_Label")     ||
+	die "Sorry, I couldn't open the escape.txt for clone: $!\n";
+
+my $Label_Index = 0;
+my $X_Label;
+my $input_Label;
+while (defined($input_Label = <LABEL>)){
+	chomp($input_Label);
+	my @cArray_Label = $input_Label =~ /(\S+)\s*/g;
+	if ($input_Label =~ /\w/){
+		if ($Label_Index == 0){
+			$Hash_X{$cArray_Label[0]} = $cArray_Label[1];
+			$X_Label = $cArray_Label[1];
+			$Label_Index = 1;
+		}else{
+			if ($cArray_Label[1] eq $X_Label){
+				$Hash_X{$cArray_Label[0]} = $cArray_Label[1];
+			}else{
+				$Hash_Y{$cArray_Label[0]} = $cArray_Label[1];
+			}
+		}
+	}
+}
+close(LABEL);
+
+open (MATRIX, "< $Input_Matrix")     ||
+	die "Sorry, I couldn't open the escape.txt for clone: $!\n";
+
+my %Hash_Matrix = ();
+my %Hash_Features = ();
+my @cArray_Features = ();
+
+my %Hash_Sum = ();
+my $Matrix_Index = 0;
+my $input_Matrix;
+while (defined($input_Matrix = <MATRIX>)){
+	chomp($input_Matrix);
+	my @cArray_Matrix = $input_Matrix =~ /(\S+)\s*/g;
+	if ($input_Matrix =~ /\w/){
+		if ($Matrix_Index == 0){
+			@cArray_Features = @cArray_Matrix;
+			my $Temp_Num_Array = scalar(@cArray_Matrix);
+			my $Temp_Index = 0;
+			for(;$Temp_Index < $Temp_Num_Array; $Temp_Index++){
+				$Hash_Features{$cArray_Matrix[$Temp_Index]} = "BOL";	
+				$Hash_Sum{$cArray_Matrix[$Temp_Index]} = 0;	
+			}
+			$Matrix_Index = 1;
+		}else{
+			$Hash_Matrix{$cArray_Matrix[0]} = $input_Matrix;
+		}
+	}
+}
+close(MATRIX);	
+
+my $Trace_Key;
+
+foreach $Trace_Key (sort {$a cmp $b} keys %Hash_X){
+	my @cArray_Trace_X = $Hash_Matrix{$Trace_Key} =~ /(\S+)\s*/g;
+	my $Num_Array_Feature_X = scalar(@cArray_Features);
+	my $Index_Feature_X = 0;
+	for(;$Index_Feature_X < $Num_Array_Feature_X; $Index_Feature_X++){
+		if ($Hash_Features{$cArray_Features[$Index_Feature_X]} eq "BOL"){
+			$Hash_Features{$cArray_Features[$Index_Feature_X]} = $cArray_Trace_X[$Index_Feature_X + 1];
+		}else{
+			$Hash_Features{$cArray_Features[$Index_Feature_X]} = $Hash_Features{$cArray_Features[$Index_Feature_X]} . "\t" . $cArray_Trace_X[$Index_Feature_X + 1];
+		}
+
+		$Hash_Sum{$cArray_Features[$Index_Feature_X]} += $cArray_Trace_X[$Index_Feature_X + 1];
+	} 		
+	$My_Num_X ++;
+}
+
+my $Append_Key;
+foreach $Append_Key (keys %Hash_Features){
+	$Hash_Features{$Append_Key} = $Hash_Features{$Append_Key} . "\t" . $Hash_Sum{$Append_Key};
+	$Hash_Sum{$Append_Key} = 0;
+}
+
+foreach $Trace_Key (sort {$a cmp $b} keys %Hash_Y){
+	my @cArray_Trace_Y = $Hash_Matrix{$Trace_Key} =~ /(\S+)\s*/g;
+	my $Num_Array_Feature_Y = scalar(@cArray_Features);
+	my $Index_Feature_Y = 0;
+	for(;$Index_Feature_Y < $Num_Array_Feature_Y; $Index_Feature_Y++){
+		if ($Hash_Features{$cArray_Features[$Index_Feature_Y]} eq "BOL"){
+			$Hash_Features{$cArray_Features[$Index_Feature_Y]} = $cArray_Trace_Y[$Index_Feature_Y + 1];
+		}else{
+			$Hash_Features{$cArray_Features[$Index_Feature_Y]} = $Hash_Features{$cArray_Features[$Index_Feature_Y]} . "\t" . $cArray_Trace_Y[$Index_Feature_Y + 1];
+		}
+
+		$Hash_Sum{$cArray_Features[$Index_Feature_Y]} += $cArray_Trace_Y[$Index_Feature_Y + 1];
+	} 		
+	$My_Num_Y ++;
+}
+
+foreach $Append_Key (keys %Hash_Features){
+	$Hash_Features{$Append_Key} = $Hash_Features{$Append_Key} . "\t" . $Hash_Sum{$Append_Key} . "\t" . "EOL";
+}
+
+my $Prt_Key;
+print OUT " \t";
+foreach $Prt_Key (sort {$a cmp $b} keys %Hash_X){
+	print OUT "$Prt_Key \t";
+}
+print OUT "X(SUM) \t";
+
+foreach $Prt_Key (sort {$a cmp $b} keys %Hash_Y){
+	print OUT "$Prt_Key \t";
+}
+print OUT "Y(SUM) \t";
+print OUT "\n";
+
+my $Prt_Index = 0;
+my $Prt_Array_Num = scalar (@cArray_Features);
+for(;$Prt_Index < $Prt_Array_Num; $Prt_Index++){
+	print OUT "$cArray_Features[$Prt_Index] \t$Hash_Features{$cArray_Features[$Prt_Index]}\n";
+}
+
+print OUT " \t";
+my $My_Label_Index = 0;
+for(;$My_Label_Index < $My_Num_X; $My_Label_Index++){
+	print OUT "X \t";
+}
+print OUT " \t";
+
+$My_Label_Index = 0;
+for(;$My_Label_Index < $My_Num_Y; $My_Label_Index++){
+	print OUT "Y \t";
+}
+print OUT " \t\n";
+
+close(OUT);
--- a/tools/stats/pca_for_lda.xml
+++ /dev/null
@@ -1,245 +0,0 @@
-<tool id="pca_for_lda1" name="Calculate PC">
-    <description>Principal Component Analysis</description>
-    <command interpreter="sh">r_wrapper.sh $script_file</command>
-
-    <inputs>
-        <param format="tabular" name="input" type="data" label="Source file">
-        </param>
-    </inputs>
-
-    <outputs>
-        <data format="txt" name="output" />
-    </outputs>
-
-    <tests>
-        <test>
-            <param name="input" value="pca_and_lda_analy_for_lda_input.tabular"/>
-            <output name="output" file="pca_for_lda_output.txt.re_match" compare="re_match"/>
-        </test>
-    </tests>
-
-    <configfiles>
-            <configfile name="script_file">
-
-        rm(list = objects() )
-
-        ############# FORMAT X DATA #########################
-        format&lt;-function(data) {
-            ind=NULL
-            for(i in 1 : ncol(data)){
-                if (is.na(data[nrow(data),i])) {
-                    ind&lt;-c(ind,i)
-                }
-            }
-            #print(is.null(ind))
-            if (!is.null(ind)) {
-                data&lt;-data[,-c(ind)]
-            }
-
-            data
-        }
-
-        ########GET RESPONSES ###############################
-        get_resp&lt;- function(data) {
-            resp1&lt;-as.vector(data[,ncol(data)])
-                resp=numeric(length(resp1))
-            for (i in 1:length(resp1)) {
-                if (resp1[i]=="Control ") {
-                    resp[i] = 0
-                }
-                if (resp1[i]=="XLMR ") {
-                    resp[i] = 1
-                }
-            }
-                return(resp)
-        }
-
-        ######## CHARS TO NUMBERS ###########################
-        f_to_numbers&lt;- function(F) { 
-            ind&lt;-NULL
-            G&lt;-matrix(0,nrow(F), ncol(F))
-            for (i in 1:nrow(F)) {
-                for (j in 1:ncol(F)) {
-                    G[i,j]&lt;-as.integer(F[i,j])
-                }
-            }
-            return(G)
-        }
-
-        ###################NORMALIZING#########################
-        norm &lt;- function(M, a=NULL, b=NULL) {
-            C&lt;-NULL
-            ind&lt;-NULL
-
-            for (i in 1: ncol(M)) {
-                if (sd(M[,i])!=0) {
-                    M[,i]&lt;-(M[,i]-mean(M[,i]))/sd(M[,i])
-                }
-                #   else {print(mean(M[,i]))}   
-            }
-            return(M)
-        }
-
-        ##### LDA DIRECTIONS #################################
-        lda_dec &lt;- function(data, k){
-            priors=numeric(k)
-            grandmean&lt;-numeric(ncol(data)-1)
-            means=matrix(0,k,ncol(data)-1)
-            B = matrix(0, ncol(data)-1, ncol(data)-1)
-            N=nrow(data)
-            for (i in 1:k){
-                priors[i]=sum(data[,1]==i)/N
-                grp=subset(data,data$group==i)
-                means[i,]=mean(grp[,2:ncol(data)])
-                #print(means[i,])
-                #print(priors[i])
-                #print(priors[i]*means[i,])
-                grandmean = priors[i]*means[i,] + grandmean           
-            }
-
-            for (i in 1:k) {
-                B= B + priors[i]*((means[i,]-grandmean)%*%t(means[i,]-grandmean))
-            }
-    
-            W = var(data[,2:ncol(data)])
-            svdW = svd(W)
-            inv_sqrtW =solve(svdW$v %*% diag(sqrt(svdW$d)) %*% t(svdW$v))
-            B_star= t(inv_sqrtW)%*%B%*%inv_sqrtW
-            B_star_decomp = svd(B_star)
-            directions  = inv_sqrtW%*%B_star_decomp$v
-            return( list(directions, B_star_decomp$d) )                          
-        }
-
-        ################ NAIVE BAYES FOR 1D SIR OR LDA ##############
-        naive_bayes_classifier &lt;- function(resp, tr_data, test_data, k=2, tau) {
-            tr_data=data.frame(resp=resp, dir=tr_data)
-            means=numeric(k)
-            #print(k)
-            cl=numeric(k)
-            predclass=numeric(length(test_data))
-            for (i in 1:k) {
-                grp = subset(tr_data, resp==i)
-                means[i] = mean(grp$dir)
-            #print(i, means[i])  
-            }
-            cutoff = tau*means[1]+(1-tau)*means[2] 
-            #print(tau)
-            #print(means)
-            #print(cutoff)
-            if (cutoff&gt;means[1]) {
-               cl[1]=1 
-               cl[2]=2
-            }
-            else {
-               cl[1]=2 
-               cl[2]=1
-            }
-
-            for (i in 1:length(test_data)) {
-
-                if (test_data[i] &lt;= cutoff) {
-                    predclass[i] = cl[1]
-            }
-                else {
-                    predclass[i] = cl[2] 
-            }  
-                }
-            #print(means)
-            #print(mean(means))
-            #X11()
-            #plot(test_data,pch=predclass, col=resp) 
-            predclass
-        }
-
-        ################# EXTENDED ERROR RATES #################
-        ext_error_rate &lt;- function(predclass, actualclass,msg=c("you forgot the message"), pr=1) {
-                 er=sum(predclass != actualclass)/length(predclass)
-
-                 matr&lt;-data.frame(predclass=predclass,actualclass=actualclass)
-                 escapes = subset(matr, actualclass==1)
-                 subjects = subset(matr, actualclass==2)      
-                 er_esc=sum(escapes$predclass != escapes$actualclass)/length(escapes$predclass) 
-                 er_subj=sum(subjects$predclass != subjects$actualclass)/length(subjects$predclass)   
-
-                 if (pr==1) {
-        #             print(paste(c(msg, 'overall : ', (1-er)*100, "%."),collapse=" "))
-        #             print(paste(c(msg, 'within escapes : ', (1-er_esc)*100, "%."),collapse=" "))
-        #             print(paste(c(msg, 'within subjects: ', (1-er_subj)*100, "%."),collapse=" ")) 
-            }
-            return(c((1-er)*100, (1-er_esc)*100, (1-er_subj)*100))                                                                                    
-        }
-
-        ## Main Function ##
-
-        files&lt;-matrix("${input}", 1,1, byrow=T)
-
-        tau&lt;-seq(0,1, by=0.005)
-        #tau&lt;-seq(0,1, by=0.1)
-        for_curve=matrix(-10, 3,length(tau))
-
-        ##############################################################
-
-        test_data_whole_X &lt;-read.delim(files[1,1], row.names=1)
-
-        #### FORMAT TRAINING DATA ####################################
-        # get only necessary columns 
-
-        test_data_whole_X&lt;-format(test_data_whole_X)
-        oligo_labels&lt;-test_data_whole_X[1:(nrow(test_data_whole_X)-1),ncol(test_data_whole_X)]
-        test_data_whole_X&lt;-test_data_whole_X[,1:(ncol(test_data_whole_X)-1)]
-
-        X_names&lt;-colnames(test_data_whole_X)[1:ncol(test_data_whole_X)]
-        test_data_whole_X&lt;-t(test_data_whole_X)
-        resp&lt;-get_resp(test_data_whole_X) 
-        ldaqda_resp = resp + 1
-        a&lt;-sum(resp)        # Number of Subject
-        b&lt;-length(resp) - a # Number of Escape   
-        ## FREQUENCIES #################################################
-        F&lt;-test_data_whole_X[,1:(ncol(test_data_whole_X)-1)]
-        F&lt;-f_to_numbers(F)
-        FN&lt;-norm(F, a, b)
-        ss&lt;-svd(FN)
-        eigvar&lt;-NULL
-        eig&lt;-ss$d^2
-
-        print_out &lt;- c(rep('NA', length(ss$d)))
-        for ( i in 1:length(ss$d)) {
-            eigvar[i]&lt;-sum(eig[1:i])/sum(eig)
-        #   print(paste(c("Variance explained : ", eigvar[i]*100, "  %"), collapse=""))
-            print_out[i] &lt;- c(eigvar[i]*100)
-        }
-
-        #My_Names &lt;- c("order of principal components", "accumulated variance explained", "")
-        #names(print_out)&lt;-My_Names
-
-        write.table(print_out, file = "${output}", col.names = FALSE, row.names = FALSE)
-
-        </configfile>
-    </configfiles>
-
-    <help>
-
-.. class:: infomark
-
-**What it does**
-
-This tool consists of the first module to perform the Principal Component Analysis as described in Carrel et al., 2006 (PMID: 17009873)
-
-*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human     Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
-
------
-
-**Example**
-
-- Input file
-
-.. image:: ../static/images/tools/lda/LDA_Input.png
-
-- Output file
-
-    The values indicate "accumulated variance explained (%)" and were sorted by the order of principal components (i.e., 1st, 2nd, 3rd, 4th...).
-
-
-</help>
-
-</tool>
--- a/tool_conf.xml.sample
+++ b/tool_conf.xml.sample
@@ -129,7 +129,7 @@
     <tool file="stats/gsummary.xml" /><tool file="filters/uniq.xml" /><tool file="stats/cor.xml" />
-    <tool file="stats/pca_for_lda.xml" />
+    <tool file="stats/generate_matrix_for_pca_lda.xml" /><tool file="stats/lda_analy.xml" /><tool file="stats/plot_from_lda.xml" /><tool file="regVariation/t_test_two_samples.xml" />
--- /dev/null
+++ b/test-data/matrix_generator_for_pc_and_lda_input_1.tabular
@@ -0,0 +1,88 @@
+	CTCAGAAAAAAA 	CCATCCATCCATCCATCC 	AGAGGGAGAGGG 	ATCTGTTGATGG 	AGGGGTGACAGA 	ATCCCATTTACA 	AAGGGTATCAGT 	ATAATATATACA 	TATTATATGTATA 	CATCATCATCATCA 	CCCCATGATCCA 	TGATTCCTTAAAGAA 	AACACTTGGACA 	TATTAATATAATTTATAAA 	ATGTTTATTTTA 	TATCCAGGAGAA 	CAATTCTCCTGCC 	ACCATAAAAATGAGAAC 	CTCAGCCATAAAAA 	ATGAGTGAGAATAT 	ACTGTGAGTCAA 	TAAACTAAAGAGCTTCTGCACAGCA 	TCCTTTGGGTATAT 	ATGCTGCTATAAAGACACATGCACAC 	TGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTG 	TCCACAATGGTTGAA 	TTGGCTGCATAAAT 	CAATGGAACAGAACAGAGCCCTCAGAAATAA 	GAACTAGAAATACCATTTGACCCAGC 	TCAAAGATCAGAT 	GACCCATCTCACACCAGTTAGAATG 	CAAAGAGAATAAAATACCTAGGTATTTTATTCTTTTT 	AAAATGGCCATACTGCCCAAG 	AAATTTTTCCAATTCTGTGAAGAAA 	TTCACAATAGCAAAGAC 	TAGGAAGAATCAATA 	CTGGGTATATACCCAGTAATGG 	TTGGAAGTTCTGGCCAGGGCAA 	TGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAA 	CTCTCACCACTCCTATTCAACATA 	ACACACACATAT 	CCATGAGCATGGAATGTTCT 	AACCCAAATGTCC 	TTTACAAGAAAAAAACAAACAACCCCA 	AGTTCTAGATCC 	CTGGAAGCATTCCCTTT 	GATCCCATTTGTC 	GATATGAACAGACA 	TGGGTTTGTCATA 	AGTTTCTTTTGC 	A
 ATTACCCAGTCT 	TCATGTCATCTGCAAACA 	AAAACTCTCAAT 	CAACTTCAGCAA 	ATTGGCTGTGGGTTT 	AATTAGATCCCA 	GACCTAAAACCA 	AGAATCTACAAT 	AAACCAAACACC 	GGAGTTCCAGACCAGCCT 	CCTTGCCCATGCC 	ATCATACTGAAT 	AGGAAGTCAAATT 	AGCAAACCACCA 	AGCATGATTTATA 	GAGAGCCAAATCATGAGTG 	AAAGAGCCAAAT 	AGCAATTGTGAATGG 	CACTATTCACAATTGC 	TCAGGATACAAAATCAATG 	CAATGAACTCAAACAAATT 	TCCAACAAAGGACATGAACTCATC 	AATTGAACAATGAGAACATGTGGTAT 	AACCACAATGAGAACA 	GTGTATATATATACAT 	ACATATATATAT 	GTCAGATGGATA 	TCATCTGACAAAGGGCTAATATCCAG 	TTTGTCAGGTTTGTCAAAG 	TTCTTAATCCAGTCTATCATT 	TTTAATCCATCTTGA 	AAACTACCATCAGAGTGAACAGGCA 	GCCATCAGAGAAAT 	ACAGGCAACCTACA 	GCAACCTACTCA 	TAGAAAACCCCAT 
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--- a/tools/stats/lda_analy.xml
+++ b/tools/stats/lda_analy.xml
@@ -1,9 +1,9 @@
-<tool id="lda_analy1" name="Perform LDA">
+<tool id="lda_analy1" name="Perform LDA" version="1.0.1"><description>Linear Discriminant Analysis</description><command interpreter="sh">r_wrapper.sh $script_file</command><inputs><param format="tabular" name="input" type="data" label="Source file"/>
-		<param name="cond" size="30" type="integer" value="3" label="Number of principal components" help="See syntax below">
+		<param name="cond" size="30" type="integer" value="3" label="Number of principal components" help="See TIP below"><validator type="empty_field" message="Enter a valid number of principal components, see syntax below for examples"/></param>
@@ -14,7 +14,7 @@
<tests><test>
-			<param name="input" value="pca_and_lda_analy_for_lda_input.tabular"/>
+			<param name="input" value="matrix_generator_for_pc_and_lda_output.tabular"/><output name="output" file="lda_analy_output.txt"/><param name="cond" value="2"/>
@@ -47,10 +47,10 @@
             resp1&lt;-as.vector(data[,ncol(data)])
                 resp=numeric(length(resp1))
             for (i in 1:length(resp1)) {
-                if (resp1[i]=="Control ") {
+                if (resp1[i]=="Y ") {
                     resp[i] = 0
                 }
-                if (resp1[i]=="XLMR ") {
+                if (resp1[i]=="X ") {
                     resp[i] = 1
                 }
             }
@@ -256,6 +256,12 @@
<help>
+.. class:: infomark
+
+**TIP:** If you want to perform Principal Component Analysis (PCA) on the give numeric input data (which corresponds to the "Source file First in "Generate A Matrix" tool), please use *Multivariate Analysis/Principal Component Analysis*
+
+-----
+
 .. class:: infomark
**What it does**
@@ -266,16 +272,13 @@ This tool consists of the module to perf
-----
-**Example**
+.. class:: warningmark
-- Input file
+**Note**
-.. image:: ../static/images/tools/lda/LDA_Input.png
+- Output from "Generate A Matrix" tool is used as input file for this tool 
+- Output of this tool contains LDA classification success rates for different values of the turning parameter tau (from 0 to 1 with 0.005 interval). This output file will be used to establish the ROC plot, and you can obtain more detail information from this plot.
-- Output file
-
-	LDA classification success rates for different values of the turning parameter tau (from 0 to 1 with 0.005 interval). 
-	This output file will be used to establish the ROC plot.
</help>
--- /dev/null
+++ b/test-data/matrix_generator_for_pc_and_lda_output.tabular
@@ -0,0 +1,88 @@
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+ACTGTGAGTCAA 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	3	2	0	0	0	2	0	3	3	0	0	0	3	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	3	0	0	26	EOL
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+TCCACAATGGTTGAA 	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	EOL
+TTGGCTGCATAAAT 	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	1	0	0	6	EOL
+CAATGGAACAGAACAGAGCCCTCAGAAATAA 	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	EOL
+GAACTAGAAATACCATTTGACCCAGC 	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	2	0	0	5	0	0	0	0	0	0	0	0	0	2	2	0	0	0	4	0	2	2	0	0	2	2	2	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	4	0	0	28	EOL
+TCAAAGATCAGAT 	1	0	0	0	0	0	0	1	0	0	1	1	0	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	0	0	10	0	0	0	0	0	0	0	0	0	2	1	0	0	0	2	0	3	3	0	0	0	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	20	EOL
+GACCCATCTCACACCAGTTAGAATG 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	EOL
+CAAAGAGAATAAAATACCTAGGTATTTTATTCTTTTT 	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	2	0	1	0	0	0	0	3	0	0	9	0	0	0	0	0	0	0	1	0	2	1	0	0	0	1	0	2	2	0	0	0	1	3	0	0	0	0	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	22	EOL
+AAAATGGCCATACTGCCCAAG 	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	12	EOL
+AAATTTTTCCAATTCTGTGAAGAAA 	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	0	0	5	0	0	0	0	0	0	0	1	0	2	2	0	0	0	1	0	2	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	0	0	0	0	0	0	1	0	0	20	EOL
+TTCACAATAGCAAAGAC 	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	2	0	0	6	0	0	0	0	0	0	1	0	0	3	1	0	0	0	1	0	2	1	0	0	0	0	2	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	16	EOL
+TAGGAAGAATCAATA 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	7	EOL
+CTGGGTATATACCCAGTAATGG 	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	2	1	0	0	0	1	0	0	1	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	10	EOL
+TTGGAAGTTCTGGCCAGGGCAA 	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	4	0	0	16	EOL
+TGAAGGACCTCTTCAAGGAGAACTACAAACCACTGCTCAA 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	9	EOL
+CTCTCACCACTCCTATTCAACATA 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	2	0	0	0	0	0	1	0	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	7	EOL
+ACACACACATAT 	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	4	EOL
+CCATGAGCATGGAATGTTCT 	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	1	2	0	0	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	4	0	0	16	EOL
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+AGTTCTAGATCC 	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	4	0	0	0	0	0	0	1	0	0	1	1	0	0	0	3	0	1	2	0	0	0	1	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	16	EOL
+CTGGAAGCATTCCCTTT 	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	EOL
+GATCCCATTTGTC 	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	1	0	0	6	0	0	0	0	0	0	0	0	0	1	2	0	0	0	2	0	1	2	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	2	0	0	17	EOL
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+TGGGTTTGTCATA 	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	9	EOL
+AGTTTCTTTTGC 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	3	1	0	0	0	1	0	0	2	0	0	0	1	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	2	0	0	16	EOL
+AATTACCCAGTCT 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	EOL
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+ATTGGCTGTGGGTTT 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	1	2	0	0	0	0	2	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	3	0	0	15	EOL
+AATTAGATCCCA 	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	2	0	0	6	0	0	0	0	0	0	0	0	0	3	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	11	EOL
+GACCTAAAACCA 	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	9	EOL
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--- a/test-data/plot_for_lda_output.pdf
+++ b/test-data/plot_for_lda_output.pdf
@@ -2,8 +2,8 @@
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- 	ARHGEF9 	KIAA2022 	ZDHHC15 	PGK1 	BRWD3 	PAK3 	AGTR2 	GRIA3 	ZDHHC9 	GPC3 	PHF6 	SOX3 	FMR1 	MTM1 	SHROOM4 	KLF8 	Sum(XLMR) 	UXT 	PCSK1N 	PAGE1 	PAGE4 	CLCN5 	NUDT10 	NUDT11 	GSPT2 	TMEM29 	GPR173 	HUWE1 	TSR2 	TRO 	MAGEH1 	USP51 	RRAGB 	UBQLN2 	SPIN3 	SPIN2A 	ZXDA 	SPIN4 	MTMR8 	KIAA1166 	LAS1L 	MSN 	HEPH 	AR 	STARD8 	TMEM28 	EDA 	SLC7A3 	CXCR3 	NAP1L2 	CHIC1 	FXYD8 	RNF12 	UPRT 	MAGEE2 	CXorf26 	MAGEE1 	FGF16 	TAF9B 	CYSLTR1 	ZCCHC5 	GPR23 	P2RY10 	ITM2A 	TBX22 	NSBP1 	RPS6KA6 	HDX 	APOOL 	ZNF711 	POF1B 	CHM 	DACH2 	KLHL4 	CPXCR1 	PABPC5 	DIAPH2 	SYTL4 	CSTF2 	DRP2 	TCEAL2 	BEX5 	NXF3 	BEX4 	TCEAL4 	ESX1 	IL1RAPL2 	NRK 	SERPINA7 	MUM1L1 	CXorf57 	MORC4 	VSIG1 	NXT2 	TMEM164 	CHRDL1 	PAK3 	ZCCHC16 	LRCH2 	LUZP4 	PLS3 	AGTR2 	CXorf61 	KLHL13 	WDR44 	LONRF3 	PGRMC1 	SLC25A43 	6-Sep 	NKAP 	ZBTB33 	FAM70A 	ATP1B4 	C1GALT1C1 	GLUD2 	GRIA3 	THOC2 	SH2D1A 	ODZ1 	WDR40C 	ACTRT1 	APLN 	XPNPEP2 	UTP14A 	BCORL1 	ENOX2 	FLJ30058 	MST4 	RAP2C 	MBNL3 	HS6ST2 	GPC4 	PHF6 	DDX26B 	FHL1 	
 BRS3 	ZIC3 	FGF13 	F9 	CDR1 	SPANXB1 	LDOC1 	SPANXE 	MAGEC3 	SLITRK4 	SPANXN2 	SPANXN1 	TMEM185A 	MAGEA8 	CXorf40B 	MAMLD1 	GPR50 	LOC203547 	PASD1 	MAGEA4 	GABRE 	MAGEA3 	PNMA3 	ZNF275 	VBP1 	TMLHE 	SPRY3 	VAMP7 	Sum(Control) 
-AGACCAGCTTGG 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	2 	0 	1 	0 	4 	0 	3 	1 	0 	0 	0 	0 	1 	2 	2 	1 	4 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	1 	0 	0 	2 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	1 	1 	2 	1 	0 	0 	0 	0 	0 	4 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	38 	XLMR
-CTCAGAAAAAAA 	1 	0 	0 	0 	1 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	4 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	0 	0 	1 	1 	0 	0 	0 	2 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	1 	27 	XLMR
-CCATCCATCCATCCATCC 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	XLMR
-AGAGGGAGAGGG 	0 	0 	0 	0 	0 	0 	0 	0 	8 	0 	0 	0 	0 	0 	0 	0 	8 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	1 	0 	0 	0 	3 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	5 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	2 	0 	0 	0 	0 	0 	0 	0 	0 	2 	1 	0 	0 	0 	1 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	26 	XLMR
-ATCTGTTGATGG 	0 	1 	0 	0 	1 	0 	0 	1 	0 	1 	1 	0 	2 	1 	1 	1 	10 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	1 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	17 	XLMR
-AGGGGTGACAGA 	0 	1 	2 	0 	0 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	1 	6 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	2 	1 	0 	1 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	1 	0 	2 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	28 	XLMR
-ATCCCATTTACA 	0 	0 	2 	0 	0 	1 	0 	0 	0 	0 	1 	0 	1 	0 	0 	1 	6 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	2 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	2 	19 	XLMR
-AAGGGTATCAGT 	0 	0 	0 	1 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	1 	4 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	1 	0 	0 	1 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	2 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	1 	0 	0 	1 	0 	0 	0 	0 	1 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	27 	XLMR
-ATAATATATACA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	14 	XLMR
-TATTATATGTATA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	XLMR
-CATCATCATCATCA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	XLMR
-CCCCATGATCCA 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	3 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	1 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	2 	0 	0 	0 	1 	1 	0 	26 	Control
-TGATTCCTTAAAGAA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	2 	Control
-AACACTTGGACA 	0 	0 	0 	1 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	1 	0 	4 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	2 	0 	1 	0 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	1 	1 	0 	1 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	1 	2 	1 	0 	0 	1 	0 	1 	1 	0 	1 	38 	Control
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-ATGTTTATTTTA 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	0 	0 	12 	Control
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-ATGAGTGAGAATAT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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-ATGCTGCTATAAAGACACATGCACAC 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-TGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTG 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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-CCATGAGCATGGAATGTTCT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-AACCCAAATGTCC 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-TTTACAAGAAAAAAACAAACAACCCCA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-AGTTCTAGATCC 	0 	1 	3 	2 	1 	1 	3 	0 	1 	0 	1 	0 	0 	0 	2 	2 	17 	1 	1 	0 	2 	2 	2 	4 	0 	0 	0 	1 	0 	4 	2 	0 	1 	1 	1 	1 	1 	1 	0 	1 	0 	0 	1 	0 	0 	3 	0 	2 	1 	0 	1 	0 	1 	4 	3 	1 	1 	1 	1 	0 	1 	1 	2 	0 	3 	2 	1 	0 	0 	1 	2 	2 	1 	2 	0 	0 	0 	1 	0 	0 	1 	3 	1 	0 	0 	0 	0 	2 	2 	2 	2 	2 	0 	2 	0 	2 	1 	0 	1 	1 	0 	3 	2 	0 	0 	0 	0 	0 	0 	3 	0 	1 	1 	1 	1 	0 	0 	0 	0 	0 	2 	1 	0 	0 	0 	1 	2 	2 	1 	1 	1 	0 	1 	0 	0 	1 	0 	0 	2 	0 	0 	0 	1 	2 	0 	1 	0 	0 	0 	1 	0 	1 	0 	1 	1 	0 	0 	1 	0 	2 	2 	2 	1 	130 	Control
-CTGGAAGCATTCCCTTT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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-TGGGTTTGTCATA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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-AATTACCCAGTCT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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-AAAACTCTCAAT 	1 	3 	2 	0 	1 	0 	2 	0 	0 	0 	0 	1 	0 	0 	0 	2 	12 	0 	1 	0 	0 	2 	0 	2 	0 	0 	0 	0 	0 	2 	3 	0 	4 	1 	0 	1 	1 	1 	2 	0 	0 	0 	0 	2 	0 	2 	0 	1 	0 	1 	2 	0 	1 	3 	0 	0 	2 	1 	1 	0 	0 	0 	1 	3 	1 	1 	0 	0 	2 	0 	2 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	2 	1 	0 	1 	0 	0 	1 	1 	1 	2 	0 	0 	1 	0 	1 	0 	1 	1 	1 	0 	2 	2 	0 	0 	0 	0 	0 	0 	1 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	1 	0 	1 	0 	0 	0 	0 	1 	0 	1 	2 	0 	0 	1 	1 	2 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	1 	0 	0 	1 	1 	0 	0 	1 	86 	Control
-CAACTTCAGCAA 	0 	4 	3 	1 	0 	0 	3 	0 	1 	0 	0 	0 	0 	0 	0 	2 	14 	0 	1 	0 	0 	3 	1 	2 	0 	0 	0 	0 	0 	2 	2 	0 	2 	1 	2 	3 	1 	2 	2 	1 	0 	0 	0 	1 	0 	1 	0 	1 	1 	2 	3 	0 	1 	3 	3 	1 	3 	1 	1 	0 	2 	0 	2 	2 	3 	3 	0 	0 	2 	0 	3 	1 	1 	1 	0 	0 	0 	1 	1 	0 	1 	3 	1 	0 	0 	1 	0 	2 	2 	2 	1 	0 	2 	0 	1 	2 	0 	1 	1 	1 	0 	3 	3 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	1 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	1 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	0 	0 	1 	1 	2 	0 	1 	0 	0 	0 	0 	0 	0 	1 	0 	0 	1 	0 	1 	0 	1 	0 	0 	1 	116 	Control
-ATTGGCTGTGGGTTT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-AATTAGATCCCA 	0 	3 	3 	1 	2 	0 	3 	1 	1 	0 	1 	0 	0 	0 	0 	2 	17 	2 	1 	0 	0 	3 	2 	1 	0 	0 	0 	1 	0 	2 	3 	0 	2 	1 	2 	2 	0 	0 	2 	0 	0 	0 	1 	0 	0 	1 	0 	1 	0 	1 	0 	0 	1 	4 	2 	1 	0 	1 	2 	0 	0 	0 	2 	1 	3 	2 	1 	0 	2 	1 	3 	2 	1 	0 	0 	0 	0 	0 	1 	0 	1 	0 	1 	1 	0 	0 	1 	1 	0 	0 	2 	0 	1 	1 	1 	2 	0 	1 	1 	1 	0 	3 	2 	0 	0 	0 	1 	0 	0 	1 	0 	1 	1 	1 	1 	1 	0 	0 	1 	0 	1 	1 	0 	0 	0 	0 	0 	1 	1 	0 	1 	0 	1 	0 	0 	1 	1 	0 	2 	0 	0 	1 	2 	3 	0 	1 	0 	0 	1 	0 	0 	0 	1 	0 	1 	0 	0 	1 	0 	2 	1 	2 	1 	113 	Control
-GACCTAAAACCA 	0 	1 	2 	1 	1 	0 	1 	0 	1 	0 	1 	0 	0 	0 	0 	2 	10 	0 	1 	0 	2 	2 	1 	3 	0 	0 	0 	1 	0 	2 	2 	0 	2 	1 	1 	1 	1 	1 	1 	2 	1 	0 	2 	1 	0 	1 	0 	1 	0 	1 	1 	0 	0 	3 	2 	1 	1 	1 	0 	0 	1 	1 	2 	1 	2 	1 	1 	0 	0 	1 	2 	1 	1 	1 	0 	0 	0 	1 	0 	0 	1 	2 	1 	1 	0 	0 	1 	2 	2 	2 	1 	0 	0 	1 	0 	1 	0 	0 	1 	1 	0 	1 	2 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	2 	1 	0 	0 	0 	0 	1 	1 	1 	0 	1 	0 	1 	0 	0 	1 	1 	0 	2 	0 	0 	0 	1 	1 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	2 	0 	1 	1 	100 	Control
-AGAATCTACAAT 	0 	3 	3 	1 	0 	0 	2 	1 	0 	0 	0 	0 	0 	0 	0 	0 	10 	1 	1 	0 	2 	2 	2 	3 	0 	0 	0 	1 	0 	2 	1 	1 	1 	1 	2 	1 	1 	1 	1 	1 	0 	0 	1 	0 	0 	1 	0 	2 	0 	0 	1 	0 	1 	1 	2 	0 	1 	0 	2 	0 	1 	1 	2 	1 	2 	1 	0 	0 	0 	0 	1 	1 	1 	1 	0 	0 	0 	1 	0 	0 	1 	1 	1 	0 	0 	0 	0 	1 	2 	2 	2 	0 	1 	2 	0 	2 	0 	1 	1 	1 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	1 	0 	0 	0 	0 	2 	0 	0 	0 	0 	0 	1 	0 	1 	0 	1 	0 	0 	0 	0 	1 	0 	0 	2 	0 	0 	0 	1 	2 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	1 	1 	89 	Control
-AAACCAAACACC 	0 	3 	4 	2 	1 	0 	2 	0 	0 	1 	1 	0 	1 	0 	0 	0 	15 	1 	1 	0 	3 	3 	3 	2 	0 	0 	0 	1 	0 	4 	2 	0 	1 	2 	1 	1 	1 	1 	4 	1 	1 	1 	4 	4 	1 	2 	0 	2 	1 	0 	2 	0 	1 	1 	2 	3 	2 	1 	2 	1 	1 	0 	0 	2 	1 	1 	0 	1 	2 	2 	2 	2 	1 	0 	0 	0 	0 	1 	0 	0 	3 	4 	1 	1 	2 	0 	2 	2 	2 	2 	3 	2 	1 	2 	1 	2 	0 	0 	1 	1 	0 	2 	1 	0 	0 	0 	0 	0 	0 	2 	0 	1 	1 	0 	1 	0 	1 	0 	0 	0 	4 	1 	0 	0 	0 	1 	1 	3 	0 	1 	1 	0 	1 	0 	0 	1 	0 	0 	1 	1 	0 	2 	0 	1 	1 	1 	0 	0 	2 	1 	0 	0 	1 	2 	1 	0 	0 	0 	0 	2 	1 	2 	1 	154 	Control
-GGAGTTCCAGACCAGCCT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-CCTTGCCCATGCC 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-ATCATACTGAAT 	0 	2 	2 	1 	0 	0 	2 	0 	1 	0 	0 	0 	1 	0 	0 	2 	11 	0 	1 	0 	0 	3 	0 	2 	0 	0 	0 	0 	0 	2 	2 	0 	3 	1 	0 	2 	0 	0 	2 	1 	1 	0 	0 	2 	0 	1 	0 	1 	0 	1 	2 	0 	0 	2 	3 	2 	0 	0 	1 	0 	2 	1 	1 	3 	5 	0 	0 	1 	2 	1 	3 	1 	2 	0 	1 	1 	0 	0 	0 	0 	0 	3 	0 	0 	0 	2 	0 	2 	3 	3 	2 	0 	2 	1 	0 	1 	0 	1 	0 	0 	0 	2 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	1 	1 	0 	1 	0 	0 	0 	0 	1 	0 	0 	2 	1 	0 	1 	1 	1 	0 	0 	1 	0 	1 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	2 	1 	1 	1 	104 	Control
-AGGAAGTCAAATT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-AGCAAACCACCA 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	1 	0 	0 	0 	4 	2 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	2 	1 	0 	1 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	1 	2 	1 	1 	0 	0 	1 	0 	0 	3 	2 	1 	1 	0 	4 	0 	0 	2 	0 	0 	0 	0 	0 	0 	0 	0 	2 	0 	0 	0 	1 	1 	2 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	1 	1 	0 	0 	0 	0 	1 	0 	1 	0 	3 	1 	1 	2 	1 	0 	1 	0 	0 	0 	0 	2 	0 	0 	1 	0 	0 	0 	1 	2 	2 	1 	64 	Control
-AGCATGATTTATA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-GAGAGCCAAATCATGAGTG 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
-AAAGAGCCAAAT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	9 	Control
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-AATTGAACAATGAGAACATGTGGTAT 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	1 	1 	0 	0 	0 	1 	1 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	1 	1 	0 	0 	1 	0 	1 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	1 	1 	1 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	0 	1 	0 	0 	0 	0 	0 	1 	0 	0 	0 	0 	0 	0 	0 	0 	1 	0 	0 	2 	0 	0 	0 	0 	0 	0 	1 	0 	1 	0 	0 	0 	0 	1 	29 	Control
-AACCACAATGAGAACA 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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-TCATCTGACAAAGGGCTAATATCCAG 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	0 	Control
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