1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/52ecc79edd36/ changeset: 52ecc79edd36 user: jgoecks date: 2012-12-14 18:47:44 summary: Allow spaces in Cuffdiff group names. affected #: 2 files

diff -r 3a71d40d7b9922e13c1e2d9d50d4ed6b85408137 -r 52ecc79edd361051da70e81d63cb670a3a265dc7 tools/ngs_rna/cuffdiff_wrapper.py --- a/tools/ngs_rna/cuffdiff_wrapper.py +++ b/tools/ngs_rna/cuffdiff_wrapper.py @@ -172,7 +172,7 @@ if options.groups: cmd += " --labels " for label in options.labels: - cmd += label + "," + cmd += '"%s",' % label cmd = cmd[:-1]

cmd += " " + options.inputA + " "

diff -r 3a71d40d7b9922e13c1e2d9d50d4ed6b85408137 -r 52ecc79edd361051da70e81d63cb670a3a265dc7 tools/ngs_rna/cuffdiff_wrapper.xml --- a/tools/ngs_rna/cuffdiff_wrapper.xml +++ b/tools/ngs_rna/cuffdiff_wrapper.xml @@ -59,7 +59,7 @@ ## Replicates. --labels #for $group in $group_analysis.groups - ${group.group} + "${group.group}" #end for --files #for $group in $group_analysis.groups

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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