1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/commits/5705e0578adf/ changeset: 5705e0578adf user: dannon date: 2013-03-04 20:43:41 summary: Update migrate_tools to the correct path. affected #: 1 file

diff -r 7010204f7ccda05f806cfe7f30a6a3bc03a5e2d7 -r 5705e0578adfb202d1bba0c4b12a9f6344fdd6b7 lib/galaxy/model/migrate/versions/0114_update_migrate_tools_table_again.py --- /dev/null +++ b/lib/galaxy/model/migrate/versions/0114_update_migrate_tools_table_again.py @@ -0,0 +1,44 @@ +""" +Migration script to update the migrate_tools.repository_path column to point to the new location lib/tool_shed/galaxy_install/migrate. +""" + +from sqlalchemy import * +from sqlalchemy.orm import * +from migrate import * +from migrate.changeset import * + +import datetime +now = datetime.datetime.utcnow +# Need our custom types, but don't import anything else from model +from galaxy.model.custom_types import * + +import sys, logging +log = logging.getLogger( __name__ ) +log.setLevel(logging.DEBUG) +handler = logging.StreamHandler( sys.stdout ) +format = "%(name)s %(levelname)s %(asctime)s %(message)s" +formatter = logging.Formatter( format ) +handler.setFormatter( formatter ) +log.addHandler( handler ) + +metadata = MetaData( migrate_engine ) +db_session = scoped_session( sessionmaker( bind=migrate_engine, autoflush=False, autocommit=True ) ) + +def upgrade(): + print __doc__ + metadata.reflect() + # Create the table. + try: + cmd = "UPDATE migrate_tools set repository_path='lib/tool_shed/galaxy_install/migrate';" + db_session.execute( cmd ) + except Exception, e: + log.debug( "Updating migrate_tools.repository_path column to point to the new location lib/tool_shed/galaxy_install/migrate failed: %s" % str( e ) ) + +def downgrade(): + metadata.reflect() + try: + cmd = "UPDATE migrate_tools set repository_path='lib/galaxy/tool_shed/migrate';" + db_session.execute( cmd ) + except Exception, e: + log.debug( "Updating migrate_tools.repository_path column to point to the old location lib/galaxy/tool_shed/migrate failed: %s" % str( e ) ) +

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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