# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks <jeremy.goecks@emory.edu> # Date 1287602065 14400 # Node ID 73c4c66ff3dd8101a0e6126077f4f8fc897c71fe # Parent 14fd007fc550092df7ea23f1019ab2d99ba03ce2 Add RNA-seq tools -- Tophat + Cufflinks suite -- to main. --- a/tool_conf.xml.sample +++ b/tool_conf.xml.sample @@ -288,7 +288,7 @@ <tool file="indels/indel_table.xml" />" <tool file="indels/indel_analysis.xml" /></section> - <section name="NGS: Expression Analysis" id="ngs-rna-tools"> + <section name="NGS: RNA Analysis" id="ngs-rna-tools"><label text="RNA-seq" id="rna_seq" /><tool file="ngs_rna/tophat_wrapper.xml" /><tool file="ngs_rna/cufflinks_wrapper.xml" /> --- a/tool_conf.xml.main +++ b/tool_conf.xml.main @@ -370,6 +370,15 @@ <tool file="genetrack/genetrack_indexer.xml" /><tool file="genetrack/genetrack_peak_prediction.xml" /></section> + <section name="NGS: RNA Analysis" id="ngs-rna-tools"> + <label text="RNA-seq" id="rna_seq" /> + <tool file="ngs_rna/tophat_wrapper.xml" /> + <tool file="ngs_rna/cufflinks_wrapper.xml" /> + <tool file="ngs_rna/cuffcompare_wrapper.xml" /> + <tool file="ngs_rna/cuffdiff_wrapper.xml" /> + <label text="Filtering" id="filtering" /> + <tool file="ngs_rna/filter_transcripts_via_tracking.xml" /> + </section><label text="RGENETICS" id="rgenetics" /><section name="SNP/WGA: Data; Filters" id="rgdat"><label text="Data: Import and upload" id="rgimport" />