Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ef58e62e6deeeecd37587c737b3113ede606f3c1 https://github.com/galaxyproject/galaxy/commit/ef58e62e6deeeecd37587c737b... Author: anatskiy <evgeny.anatskiy(a)gmail.com&gt; Date: 2016-05-05 (Thu, 05 May 2016) Changed paths: M .gitignore Log Message: ----------- excluded IntelliJ IDEA files Commit: f1a3086b87536a78c757b25d5dab51a82ee8259b https://github.com/galaxyproject/galaxy/commit/f1a3086b87536a78c757b25d5d... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-24 (Tue, 24 May 2016) Changed paths: M .ci/flake8_wrapper.sh M .ci/py3_sources.txt M .gitignore M CONTRIBUTORS.md M Makefile M README.rst R buildbot_setup.sh M client/README.md M client/bower.json M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/scripts/libs/backbone.js M client/galaxy/scripts/libs/bootstrap-tour.js M client/galaxy/scripts/libs/d3.js M client/galaxy/scripts/libs/jquery/jquery.js M client/galaxy/scripts/libs/jquery/jquery.migrate.js M client/galaxy/scripts/libs/raven.js M client/galaxy/scripts/libs/require.js M client/galaxy/scripts/libs/tracekit.js M client/galaxy/scripts/libs/underscore.js M client/galaxy/scripts/mvc/citation/citation-model.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M 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M tools/extract/extract_genomic_dna.py M tools/extract/liftOver_wrapper.py M tools/filters/axt_to_concat_fasta.xml M tools/filters/axt_to_fasta.xml M tools/filters/axt_to_lav.py M tools/filters/axt_to_lav.xml M tools/filters/bed2gff.xml M tools/filters/bed_to_bigbed.xml M tools/filters/bed_to_gff_converter.py M tools/filters/gff/extract_GFF_Features.py M tools/filters/gff/gff_filter_by_attribute.py M tools/filters/gff2bed.xml M tools/filters/gff_to_bed_converter.py M tools/filters/gtf2bedgraph.xml M tools/filters/gtf_to_bedgraph_converter.py M tools/filters/join.py M tools/filters/joinWrapper.py M tools/filters/lav_to_bed.py M tools/filters/mergeCols.py M tools/filters/sff_extract.py M tools/filters/sorter.py M tools/filters/trimmer.xml M tools/filters/wiggle_to_simple.py M tools/genomespace/genomespace_exporter.py M tools/genomespace/genomespace_file_browser.py M tools/maf/interval_maf_to_merged_fasta.py M tools/maf/maf_split_by_species.py M tools/maf/maf_thread_for_species.py M tools/maf/maf_to_fasta_concat.py M tools/maf/maf_to_fasta_multiple_sets.py M tools/metag_tools/blat_wrapper.py M tools/metag_tools/shrimp_color_wrapper.py M tools/metag_tools/shrimp_wrapper.py M tools/next_gen_conversion/fastq_conversions.py M tools/next_gen_conversion/fastq_gen_conv.py M tools/next_gen_conversion/solid_to_fastq.py M tools/ngs_simulation/ngs_simulation.py M tools/phenotype_association/pagetag.py M tools/phenotype_association/senatag.py M tools/solid_tools/maq_cs_wrapper.py M tools/solid_tools/solid_qual_stats.py M tools/sr_assembly/velveth_wrapper.py M tools/sr_mapping/bfast_wrapper.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/filtering.py M tools/stats/filtering.xml M tools/stats/grouping.py M tools/stats/grouping.xml M tools/stats/gsummary.py Log Message: ----------- Merge branch 'dev' of https://github.com/galaxyproject/galaxy into dev Commit: d2c53ee724041ed6947b6db35665fd9ebb624ca8 https://github.com/galaxyproject/galaxy/commit/d2c53ee724041ed6947b6db356... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-24 (Tue, 24 May 2016) Changed paths: M config/galaxy.ini.sample M lib/galaxy/config.py Log Message: ----------- add config objects for the communication server Commit: 20f25f0e35a8ca8b979aa971626925e413e39130 https://github.com/galaxyproject/galaxy/commit/20f25f0e35a8ca8b979aa97162... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M lib/galaxy/managers/configuration.py Log Message: ----------- add communication host/port to the URL Commit: f8a20cb85fa072bc2539a59c1869599be0137bfd https://github.com/galaxyproject/galaxy/commit/f8a20cb85fa072bc2539a59c18... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: A scripts/communication_server.py Log Message: ----------- add rt-communication server based on flask Commit: e9642720b81b8ef9aed083b49fb2bc191333b376 https://github.com/galaxyproject/galaxy/commit/e9642720b81b8ef9aed083b49f... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-25 (Wed, 25 May 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js Log Message: ----------- updating files for real time communication-server and client Commit: 19d333d427695e11080eee705dc7ad75af5f2cda https://github.com/galaxyproject/galaxy/commit/19d333d427695e11080eee705d... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-26 (Thu, 26 May 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- updated files for real time communication feature addition Commit: f4273ce56e23be9088b181cf02539be334310cb2 https://github.com/galaxyproject/galaxy/commit/f4273ce56e23be9088b181cf02... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-26 (Thu, 26 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- updated the chat server client template Commit: e90de49f584e45cf897fd63cf153dfe1bd251e43 https://github.com/galaxyproject/galaxy/commit/e90de49f584e45cf897fd63cf1... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-27 (Fri, 27 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Change you to Me, some style fixes, Commit: fff6c5e519875588abebd1a649e9097c38df28d6 https://github.com/galaxyproject/galaxy/commit/fff6c5e519875588abebd1a649... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-27 (Fri, 27 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- updated chat server for few features Commit: 053e5173cc9c179e3ad3b55177fd4f91c58839dc https://github.com/galaxyproject/galaxy/commit/053e5173cc9c179e3ad3b55177... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-27 (Fri, 27 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- updating the chat client template Commit: 574136ce3fc518cfafe7c9e984c35b1cb3036fcd https://github.com/galaxyproject/galaxy/commit/574136ce3fc518cfafe7c9e984... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-27 (Fri, 27 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- style changes Commit: b7cb80343607d9af997cb539e2c3fe0239ca2ac3 https://github.com/galaxyproject/galaxy/commit/b7cb80343607d9af997cb539e2... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- added show full chat history feature Commit: a539846c043d79a605eaa847e00557d2662758d1 https://github.com/galaxyproject/galaxy/commit/a539846c043d79a605eaa847e0... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Log Message: ----------- added show full chat history feature Commit: 687f26edf706358ef06a84c6f4ae171575d00a69 https://github.com/galaxyproject/galaxy/commit/687f26edf706358ef06a84c6f4... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- updated full chat history feature and added sent date time Commit: 69d422ca034841b3fef6ede498f3df82f8ccc40b https://github.com/galaxyproject/galaxy/commit/69d422ca034841b3fef6ede498... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- updated chat template code Commit: 233c752a0b27cbd98aee99b0cb422f6c119f5e4a https://github.com/galaxyproject/galaxy/commit/233c752a0b27cbd98aee99b0cb... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M client/galaxy/scripts/layout/menu.js Log Message: ----------- style changes Commit: f2ccbc6f6c73786839acb6792c86043337e36ba3 https://github.com/galaxyproject/galaxy/commit/f2ccbc6f6c73786839acb6792c... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M client/galaxy/scripts/layout/page.js Log Message: ----------- style changes and only show the icon if the user has activated the communication app inside of user-preferences Commit: 67bb0874c522db4c7980032bf15eac2924277a11 https://github.com/galaxyproject/galaxy/commit/67bb0874c522db4c7980032bf1... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M config/galaxy.ini.sample M lib/galaxy/config.py Log Message: ----------- add new config parameter to indicate if the communication application is active Commit: e572be746fc4f93dd3326a41fdd508eaaebe4867 https://github.com/galaxyproject/galaxy/commit/e572be746fc4f93dd3326a41fd... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M lib/galaxy/util/__init__.py Log Message: ----------- Convert "1" also to True inside of string_as_bool() Commit: cb6f739712d47699ca1196e89d1fea830aeb1868 https://github.com/galaxyproject/galaxy/commit/cb6f739712d47699ca1196e89d... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M lib/galaxy/managers/users.py M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- add user.preferences to be serialised and available in the client Commit: 1ba0ef705a4d3f3b7538e68a50b9a66d004273cd https://github.com/galaxyproject/galaxy/commit/1ba0ef705a4d3f3b7538e68a50... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- remove debug statements Commit: e6843de2dfc10fae7d47671d9e3cc7d43ebcbbfd https://github.com/galaxyproject/galaxy/commit/e6843de2dfc10fae7d47671d9e... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M templates/user/index.mako Log Message: ----------- add new change_communication action to the user controller, to offer communication related options to the user preference panel Commit: c91c4f4089ec2ffc0195bfcb280fbcf5ea6f755a https://github.com/galaxyproject/galaxy/commit/c91c4f4089ec2ffc0195bfcb28... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: A templates/user/communication_settings.mako Log Message: ----------- add communication setting to the user preference panel Commit: b07cfa887d2e751fe35296d8a39749ac73c2deb2 https://github.com/galaxyproject/galaxy/commit/b07cfa887d2e751fe35296d8a3... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js Log Message: ----------- make client updates Commit: 1dac71a42ded24fd18db005de003f2fd69a3f551 https://github.com/galaxyproject/galaxy/commit/1dac71a42ded24fd18db005de0... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Merge branch 'rt_comm' of https://github.com/bgruening/galaxy into rt_comm Commit: 48466e1a84dd5f11e6b4ac03ce657cddf9a49253 https://github.com/galaxyproject/galaxy/commit/48466e1a84dd5f11e6b4ac03ce... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-28 (Sat, 28 May 2016) Changed paths: M client/galaxy/scripts/layout/page.js M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/page.js Log Message: ----------- adjusted previous changes with new ones for the communication server Commit: 7ea4051820acf61a176f3a5294957d64f5e2577c https://github.com/galaxyproject/galaxy/commit/7ea4051820acf61a176f3a5294... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- a lot of cleanups Commit: 267e1fa3813003f9a18b338a892ce99dddd35a18 https://github.com/galaxyproject/galaxy/commit/267e1fa3813003f9a18b338a89... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: A static/style/base.css Log Message: ----------- create symlink Commit: eb58c101d935fd54e4922f7e5d2e18cc79c61c91 https://github.com/galaxyproject/galaxy/commit/eb58c101d935fd54e4922f7e5d... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: M scripts/communication_server.py A scripts/socket.js Log Message: ----------- adding socket.js and updating chat server Commit: 230aa1c106da8f21037f24fa16a5700d54ac9615 https://github.com/galaxyproject/galaxy/commit/230aa1c106da8f21037f24fa16... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: R scripts/socket.js Log Message: ----------- remove socket.js file Commit: ee647dbe80d57aa6f596833fdcf2b0ab93b2cf9b https://github.com/galaxyproject/galaxy/commit/ee647dbe80d57aa6f596833fdc... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- revert to fetching resources from the URLs and adjusted the size of chat window Commit: 7abca061f5dca22b9d6ee9a63f29071f9c5b4c82 https://github.com/galaxyproject/galaxy/commit/7abca061f5dca22b9d6ee9a63f... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- removed disconnet icon and moved the functionality to online status icon Commit: 915a882ff492bccbb233d18730c060bccafdd122 https://github.com/galaxyproject/galaxy/commit/915a882ff492bccbb233d18730... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-29 (Sun, 29 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- css changes Commit: 0ef409dc1274af7b1530c3823c1c6a9ca4db21d0 https://github.com/galaxyproject/galaxy/commit/0ef409dc1274af7b1530c3823c... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-30 (Mon, 30 May 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- adding close button and updating chat ui Commit: 4491e6bb4765895a979eaaaf22330f5744f7190a https://github.com/galaxyproject/galaxy/commit/4491e6bb4765895a979eaaaf22... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-31 (Tue, 31 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- updated server to clean up Commit: 499f76e1d93bf77aaade47f50c7c1906b8ba31ba https://github.com/galaxyproject/galaxy/commit/499f76e1d93bf77aaade47f50c... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-05-31 (Tue, 31 May 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- removed a couple of fontawesome icons Commit: 2831ac80f74486d4126b8694e00939af1d69d095 https://github.com/galaxyproject/galaxy/commit/2831ac80f74486d4126b8694e0... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-05 (Sun, 05 Jun 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- adding feature of chat rooms tabs and notification color Commit: 656b2c5c6857c32c43c9e3a0ec60224cc4166ca0 https://github.com/galaxyproject/galaxy/commit/656b2c5c6857c32c43c9e3a0ec... Author: Remi Marenco <remi.marenco(a)gmail.com&gt; Date: 2016-06-05 (Sun, 05 Jun 2016) Changed paths: A scripts/communication/template/communication.html M scripts/communication_server.py Log Message: ----------- Move the html template into a dedicated folder + Add info about button online/offline Commit: 5b196571425babf004871390e99ed073b775974f https://github.com/galaxyproject/galaxy/commit/5b196571425babf004871390e9... Author: Björn Grüning <bjoern(a)gruenings.eu&gt; Date: 2016-06-05 (Sun, 05 Jun 2016) Changed paths: A scripts/communication/template/communication.html M scripts/communication_server.py Log Message: ----------- Merge pull request #11 from remimarenco/rt_comm Add info for connection status + extract HTML into a template folder Commit: 009cbe4cb4c1c79822ef061c7ed52f07d83ae4bb https://github.com/galaxyproject/galaxy/commit/009cbe4cb4c1c79822ef061c7e... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication/template/communication.html Log Message: ----------- added horizontal scroll in case of multiple tabs/rooms Commit: 7a93c845d6ae4a5a5ce81b484724c7766a31abd4 https://github.com/galaxyproject/galaxy/commit/7a93c845d6ae4a5a5ce81b4847... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Talk to Galaxy to parse cookies Commit: 03b5622ab5bc3991d13020ff6c8acd533dbe3d05 https://github.com/galaxyproject/galaxy/commit/03b5622ab5bc3991d13020ff6c... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Debug mode + flask-login Commit: ca14290dc95fea6d5b0617659a062f38f92578be https://github.com/galaxyproject/galaxy/commit/ca14290dc95fea6d5b0617659a... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Serve separate files using approved serve method Commit: e08a7cd39a59e191b430dae01e816ab21c8dd11f https://github.com/galaxyproject/galaxy/commit/e08a7cd39a59e191b430dae01e... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: A scripts/communication/template/communication.css M scripts/communication/template/communication.html A scripts/communication/template/communication.js M scripts/communication_server.py Log Message: ----------- Separate out into three files for legibility Commit: 346f4e21b039050544fbfbafcc841ebcd9997e17 https://github.com/galaxyproject/galaxy/commit/346f4e21b039050544fbfbafcc... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Tiny reorg, prettier printing Commit: c4d11500aca3353bb0c6cdddd92bb0de1712f3b8 https://github.com/galaxyproject/galaxy/commit/c4d11500aca3353bb0c6cdddd9... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- Refactor to not use client provided usernames Commit: 67d614e26cf0e8bf138ed9e5172a75dbe9e54aeb https://github.com/galaxyproject/galaxy/commit/67d614e26cf0e8bf138ed9e517... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- Do not trust clients. Also switch to logging from printing Commit: 8576b634d5f812bd0119f82dcf1cb16e377df68b https://github.com/galaxyproject/galaxy/commit/8576b634d5f812bd0119f82dcf... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-07 (Tue, 07 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- prod ready! (ish) Commit: d5797fc706c42dc8135cb18d5d7457988a4bbf93 https://github.com/galaxyproject/galaxy/commit/d5797fc706c42dc8135cb18d5d... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M client/galaxy/scripts/layout/menu.js Log Message: ----------- Whitespace + fix iframe URL Commit: 640c5b4c7b6eefdb95382e535283609a86a7b452 https://github.com/galaxyproject/galaxy/commit/640c5b4c7b6eefdb95382e5352... Author: Björn Grüning <bjoern(a)gruenings.eu&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M client/galaxy/scripts/layout/menu.js A scripts/communication/template/communication.css M scripts/communication/template/communication.html A scripts/communication/template/communication.js M scripts/communication_server.py Log Message: ----------- Merge pull request #12 from erasche/rt-comm-2 Some small updates for security Commit: 983328f817ff9da469df1000adc92367b455b015 https://github.com/galaxyproject/galaxy/commit/983328f817ff9da469df1000ad... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M scripts/communication_server.py Log Message: ----------- change handling of id_secret slightly Commit: 0bff02f95ddd19d5cd22ca9a70ca316913fd0f3d https://github.com/galaxyproject/galaxy/commit/0bff02f95ddd19d5cd22ca9a70... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: A scripts/communication/communication_server.py R scripts/communication_server.py Log Message: ----------- move everything under scripts/communication Commit: a4970e71cf04acf336c4463c0103a7aa0f8de777 https://github.com/galaxyproject/galaxy/commit/a4970e71cf04acf336c4463c01... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M scripts/communication/communication_server.py Log Message: ----------- adjust path to galaxy-lib Commit: c79dadd931cdb989197ac78096b98c4163725568 https://github.com/galaxyproject/galaxy/commit/c79dadd931cdb989197ac78096... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- client updates Commit: 4d186982ce9fb907d9d25006dc7646e14e589d32 https://github.com/galaxyproject/galaxy/commit/4d186982ce9fb907d9d25006dc... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M scripts/communication/communication_server.py Log Message: ----------- fix a few bugs, we should now be back to buisness Commit: 3dbd6d8074c44d7cfb333c8b5a49de40e683af9a https://github.com/galaxyproject/galaxy/commit/3dbd6d8074c44d7cfb333c8b5a... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M client/galaxy/scripts/layout/page.js Log Message: ----------- fix error if no user is logged in Commit: 5a3580c752c45e5a7d68fd742a0b6336a09169ea https://github.com/galaxyproject/galaxy/commit/5a3580c752c45e5a7d68fd742a... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/page.js Log Message: ----------- client updates Commit: 6bc64e74263097a969b5d097c9334b41b7b59425 https://github.com/galaxyproject/galaxy/commit/6bc64e74263097a969b5d097c9... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-08 (Wed, 08 Jun 2016) Changed paths: M scripts/communication/communication_server.py Log Message: ----------- enhance documentation Commit: 74e3e05034e146bfa3b13c177557e78097265bb7 https://github.com/galaxyproject/galaxy/commit/74e3e05034e146bfa3b13c1775... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-09 (Thu, 09 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- fix js bug Commit: 043b129c91b3b2b679d4bb4e31db4970c26219e8 https://github.com/galaxyproject/galaxy/commit/043b129c91b3b2b679d4bb4e31... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-09 (Thu, 09 Jun 2016) Changed paths: M scripts/communication/communication_server.py Log Message: ----------- Merge branch 'rt_comm' of https://github.com/bgruening/galaxy into rt_comm Commit: 0cd28c72515804f859cb9054a13a157fc8ebf2e6 https://github.com/galaxyproject/galaxy/commit/0cd28c72515804f859cb9054a1... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-10 (Fri, 10 Jun 2016) Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js Log Message: ----------- Added global chat rooms Commit: 581108a442ec762dc9d87111f9425c01accc67c5 https://github.com/galaxyproject/galaxy/commit/581108a442ec762dc9d87111f9... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-10 (Fri, 10 Jun 2016) Changed paths: M config/galaxy.ini.sample M lib/galaxy/config.py Log Message: ----------- backend work for persistent chat rooms Commit: f75189aaaadf697d5759023cdc72fefa8f1d17c8 https://github.com/galaxyproject/galaxy/commit/f75189aaaadf697d5759023cdc... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-10 (Fri, 10 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- style cleanups Commit: e0c4e1cef04cde226bc140a62beb47670a25b85d https://github.com/galaxyproject/galaxy/commit/e0c4e1cef04cde226bc140a62b... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-11 (Sat, 11 Jun 2016) Changed paths: M lib/galaxy/managers/configuration.py Log Message: ----------- access the list of persistent chat rooms via Galaxy.config object Commit: 80ee76cb39c06f8a922e3fbcf9930711c3eeb6ce https://github.com/galaxyproject/galaxy/commit/80ee76cb39c06f8a922e3fbcf9... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-11 (Sat, 11 Jun 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- Adding persistent rooms from config Commit: 074fefeda2b10accec700e250e516aa8bd9e6a0b https://github.com/galaxyproject/galaxy/commit/074fefeda2b10accec700e250e... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-13 (Mon, 13 Jun 2016) Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js Log Message: ----------- Adding features-space enabled chat room names, ctrl+l for chat log deletion, removing delete icon, smooth transition on window load and code cleanup Commit: f034f1778b7482e182f8a03d6c53774361875b56 https://github.com/galaxyproject/galaxy/commit/f034f1778b7482e182f8a03d6c... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-14 (Tue, 14 Jun 2016) Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.js Log Message: ----------- make the communication window more packed Commit: 111a1c62223d4d252f91f5bed5f009bf3c58bd2e https://github.com/galaxyproject/galaxy/commit/111a1c62223d4d252f91f5bed5... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-14 (Tue, 14 Jun 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- Fixing the issue with persistent room names with spaces, adding fancy scroll bar, buttons instead of links for persistent rooms and UI changes for message area Commit: 5ed647e34f69fb3ab05982a135fa2be7f65310f5 https://github.com/galaxyproject/galaxy/commit/5ed647e34f69fb3ab05982a135... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M scripts/communication/communication_server.py Log Message: ----------- release preparation Commit: f27e80e46dd1a1af7991fe1fc62a428dbbe49715 https://github.com/galaxyproject/galaxy/commit/f27e80e46dd1a1af7991fe1fc6... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- fix documenation Commit: 52e1918e9e2807f30c0c5a64d9493d5a766f6312 https://github.com/galaxyproject/galaxy/commit/52e1918e9e2807f30c0c5a64d9... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- add Commit: b18decddda86ddc0fa7a813c1bad64722123da83 https://github.com/galaxyproject/galaxy/commit/b18decddda86ddc0fa7a813c1b... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js Log Message: ----------- client updates Commit: b8a92a3f80661f2b729160163343034216616e53 https://github.com/galaxyproject/galaxy/commit/b8a92a3f80661f2b7291601633... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M scripts/communication/template/communication.html M scripts/communication/template/communication.js Log Message: ----------- Fixing issue with no persistent rooms Commit: ab43e094c2c7f5d3c5ba6d2e82af3f7c5fd52970 https://github.com/galaxyproject/galaxy/commit/ab43e094c2c7f5d3c5ba6d2e82... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M lib/galaxy/web/framework/middleware/remoteuser.py Log Message: ----------- Allow changing settings under remote_user Commit: 83e61f1ca4c16b5383b7ae0dba36c1b0aab2dce8 https://github.com/galaxyproject/galaxy/commit/83e61f1ca4c16b5383b7ae0dba... Author: Eric Rasche <rasche.eric(a)gmail.com&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M scripts/communication/communication_server.py M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js Log Message: ----------- Support gravatar and rework template Commit: 0d9865b5c56c1d6e7d0f15c8e566e1b30fffd2f3 https://github.com/galaxyproject/galaxy/commit/0d9865b5c56c1d6e7d0f15c8e5... Author: Björn Grüning <bjoern(a)gruenings.eu&gt; Date: 2016-06-18 (Sat, 18 Jun 2016) Changed paths: M lib/galaxy/web/framework/middleware/remoteuser.py M scripts/communication/communication_server.py M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js Log Message: ----------- Merge pull request #14 from erasche/rt_comm-gravatar Gravatar suppot Commit: 4a304b63b12073dc2c82e811fa9acde04337170b https://github.com/galaxyproject/galaxy/commit/4a304b63b12073dc2c82e811fa... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/communication_server.py Log Message: ----------- fix pep8 Commit: b690abb46a03c1d622e8395ae6d4752952354861 https://github.com/galaxyproject/galaxy/commit/b690abb46a03c1d622e8395ae6... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- make chat view a little bit more compact and fix bug in displaying "me" messages Commit: c017b516663a312a866fd3000547982838a67b8a https://github.com/galaxyproject/galaxy/commit/c017b516663a312a866fd30005... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.js Log Message: ----------- Fixed UI issues and log deletion functionality in main tab Commit: e477d728d407cde21449549c5e464da8b54044f0 https://github.com/galaxyproject/galaxy/commit/e477d728d407cde21449549c5e... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- do not show gravatar for server messages Commit: 10c2764f097beb1b5c2b221377424002c698d7ca https://github.com/galaxyproject/galaxy/commit/10c2764f097beb1b5c2b221377... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- add the identicon to gravatar Commit: feb00567e4f08970be67f75ccee8df7940b9067a https://github.com/galaxyproject/galaxy/commit/feb00567e4f08970be67f75cce... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.js Log Message: ----------- Adjusted the vertical position of gravatar icons Commit: 008220d88d4d2699f901b9e2e656afd7510473c0 https://github.com/galaxyproject/galaxy/commit/008220d88d4d2699f901b9e2e6... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.js Log Message: ----------- Adjusted the vertical position of gravatar icons Commit: 464e9a42615bed11197a43fbd082f0c31076ca71 https://github.com/galaxyproject/galaxy/commit/464e9a42615bed11197a43fbd0... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M scripts/communication/template/communication.html M scripts/communication/template/communication.js Log Message: ----------- Fixed issue with Firefox auto scrolling Commit: 1f1c35f70873b87e0923fc04b1c11d546e100a04 https://github.com/galaxyproject/galaxy/commit/1f1c35f70873b87e0923fc04b1... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M .gitignore M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M config/galaxy.ini.sample M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/users.py M lib/galaxy/util/__init__.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/controllers/user.py A scripts/communication/communication_server.py A scripts/communication/template/communication.css A scripts/communication/template/communication.html A scripts/communication/template/communication.js M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js A static/style/base.css A templates/user/communication_settings.mako M templates/user/index.mako Log Message: ----------- merge Commit: 474a8889e346b21f24d557880929b9c0eb989a8a https://github.com/galaxyproject/galaxy/commit/474a8889e346b21f24d5578809... Author: Bjoern Gruening <bjoern.gruening(a)gmail.com&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map Log Message: ----------- update client Commit: b81034554377d3e0a3f971eae579c42a032c0685 https://github.com/galaxyproject/galaxy/commit/b81034554377d3e0a3f971eae5... Author: Björn Grüning <bjoern(a)gruenings.eu&gt; Date: 2016-06-19 (Sun, 19 Jun 2016) Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py Log Message: ----------- fix pep8 warning Commit: 93c33b4188548ff4575befcbb5b7787585085364 https://github.com/galaxyproject/galaxy/commit/93c33b4188548ff4575befcbb5... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-07-10 (Sun, 10 Jul 2016) Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/style/less/base.less M static/maps/layout/menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/style/blue/base.css Log Message: ----------- A bit of clean of menu.js for the chat tab Commit: 66c3e418a6d55fbee8211a95fb0913e7e0418b17 https://github.com/galaxyproject/galaxy/commit/66c3e418a6d55fbee8211a95fb... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-07-10 (Sun, 10 Jul 2016) Changed paths: A client/galaxy/scripts/layout/generic-nav-view.js Log Message: ----------- Adding generic nav view Commit: ff23df05216750b5df4c7f2050fe30f009d24832 https://github.com/galaxyproject/galaxy/commit/ff23df05216750b5df4c7f2050... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-07-10 (Sun, 10 Jul 2016) Changed paths: M static/maps/layout/menu.js.map Log Message: ----------- adding static menu map file Commit: 28744e1235a0decc26f2fb5545f4946e6cece25a https://github.com/galaxyproject/galaxy/commit/28744e1235a0decc26f2fb5545... Author: anatskiy <evgeny.anatskiy(a)gmail.com&gt; Date: 2016-07-10 (Sun, 10 Jul 2016) Changed paths: M .gitignore Log Message: ----------- ignore IDEA files Commit: 0d915ce131e1928fe1feab82633ef6bf90ebce0f https://github.com/galaxyproject/galaxy/commit/0d915ce131e1928fe1feab8263... Author: anuprulez <anup.rulez(a)gmail.com&gt; Date: 2016-07-14 (Thu, 14 Jul 2016) Changed paths: M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/style/less/base.less M scripts/communication/template/communication.css M scripts/communication/template/communication.js M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css Log Message: ----------- Adding maximize/minimize feature to the communication channel Commit: 5b0641fe4a5dc681b75a357f04578f7b53ccb733 https://github.com/galaxyproject/galaxy/commit/5b0641fe4a5dc681b75a357f04... 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static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-view.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/tracks.js M static/style/blue/base.css M templates/admin/impersonate.mako M templates/ind_share_base.mako M templates/user/change_password.mako M templates/webapps/galaxy/dataset/copy_view.mako M templates/webapps/galaxy/history/grid.mako M templates/webapps/galaxy/library/common/import_datasets_to_histories.mako M test/api/helpers.py M test/api/test_datasets.py M test/api/test_tool_data.py M test/api/test_tools.py M test/api/test_users.py M test/api/test_workflow_extraction.py M test/api/test_workflows.py A test/functional/tools/identifier_collection.xml A test/functional/tools/output_filter_exception_1.xml M test/functional/tools/samples_tool_conf.xml M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/shed_functional/base/twilltestcase.py M test/shed_functional/functional_tests.py M test/unit/datatypes/dataproviders/test_base_dataproviders.py M test/unit/datatypes/dataproviders/test_line_dataproviders.py A test/unit/datatypes/test_data.py A test/unit/jobs/dynamic_tool_destination/__init__.py A test/unit/jobs/dynamic_tool_destination/data/dest_fail.yml A test/unit/jobs/dynamic_tool_destination/data/priority_tool_destination.yml A test/unit/jobs/dynamic_tool_destination/data/test.empty A test/unit/jobs/dynamic_tool_destination/data/test.fasta A test/unit/jobs/dynamic_tool_destination/data/test1.full A test/unit/jobs/dynamic_tool_destination/data/test3.full A test/unit/jobs/dynamic_tool_destination/data/test_no_verbose.yml A test/unit/jobs/dynamic_tool_destination/data/test_num_input_datasets.yml A test/unit/jobs/dynamic_tool_destination/data/test_users.yml A test/unit/jobs/dynamic_tool_destination/data/tool_destination.yml A test/unit/jobs/dynamic_tool_destination/mockGalaxy.py A test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py A test/unit/jobs/dynamic_tool_destination/ymltests.py M test/unit/managers/base.py M test/unit/managers/test_DatasetManager.py M test/unit/managers/test_HDAManager.py M test/unit/managers/test_HDCAManager.py M test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py M test/unit/managers/test_UserManager.py M test/unit/test_galaxy_mapping.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_toolbox.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/base/test_HookPluginManager.py M test/unit/web/base/test_PageServingPluginManager.py M test/unit/web/base/test_PluginManager.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/gsummary.xml M tox.ini Log Message: ----------- Merge branch 'dev' of https://github.com/galaxyproject/galaxy into dev Commit: 6b8b0cde5b6a2725177e409ebc84ba1591f5bd40 https://github.com/galaxyproject/galaxy/commit/6b8b0cde5b6a2725177e409ebc... 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test/unit/jobs/dynamic_tool_destination/mockGalaxy.py A test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py A test/unit/jobs/dynamic_tool_destination/ymltests.py M test/unit/managers/base.py M test/unit/managers/test_DatasetManager.py M test/unit/managers/test_HDAManager.py M test/unit/managers/test_HDCAManager.py M test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py M test/unit/managers/test_UserManager.py M test/unit/test_galaxy_mapping.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_toolbox.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/base/test_HookPluginManager.py M test/unit/web/base/test_PageServingPluginManager.py M test/unit/web/base/test_PluginManager.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/gsummary.xml M tox.ini Log Message: ----------- make client Commit: b0566ad9ce8daf42a10bd013f7bd5d9efdfc4fa4 https://github.com/galaxyproject/galaxy/commit/b0566ad9ce8daf42a10bd013f7... Author: Björn Grüning <bjoern(a)gruenings.eu&gt; Date: 2016-07-23 (Sat, 23 Jul 2016) Changed paths: M .gitignore A client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/style/less/base.less M config/galaxy.ini.sample M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/users.py M lib/galaxy/util/__init__.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/controllers/user.py A scripts/communication/communication_server.py A scripts/communication/template/communication.css A scripts/communication/template/communication.html A scripts/communication/template/communication.js A static/maps/layout/generic-nav-view.js.map M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map A static/scripts/layout/generic-nav-view.js M static/scripts/layout/menu.js M static/scripts/layout/page.js A static/style/base.css M static/style/blue/base.css A templates/user/communication_settings.mako M templates/user/index.mako Log Message: ----------- Merge pull request #2515 from bgruening/realtime_communication Add a simple Galaxy Communication Server for realtime communication between Galaxy users. Compare: https://github.com/galaxyproject/galaxy/compare/47522208c6d7...b0566ad9ce8d