Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ef58e62e6deeeecd37587c737b3113ede606f3c1 https://github.com/galaxyproject/galaxy/commit/ef58e62e6deeeecd37587c737b311... Author: anatskiy evgeny.anatskiy@gmail.com Date: 2016-05-05 (Thu, 05 May 2016)

Changed paths: M .gitignore

Log Message: ----------- excluded IntelliJ IDEA files

Commit: f1a3086b87536a78c757b25d5dab51a82ee8259b https://github.com/galaxyproject/galaxy/commit/f1a3086b87536a78c757b25d5dab5... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-24 (Tue, 24 May 2016)

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tools/solid_tools/maq_cs_wrapper.py M tools/solid_tools/solid_qual_stats.py M tools/sr_assembly/velveth_wrapper.py M tools/sr_mapping/bfast_wrapper.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/filtering.py M tools/stats/filtering.xml M tools/stats/grouping.py M tools/stats/grouping.xml M tools/stats/gsummary.py

Log Message: ----------- Merge branch 'dev' of https://github.com/galaxyproject/galaxy into dev

Commit: d2c53ee724041ed6947b6db35665fd9ebb624ca8 https://github.com/galaxyproject/galaxy/commit/d2c53ee724041ed6947b6db35665f... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-24 (Tue, 24 May 2016)

Changed paths: M config/galaxy.ini.sample M lib/galaxy/config.py

Log Message: ----------- add config objects for the communication server

Commit: 20f25f0e35a8ca8b979aa971626925e413e39130 https://github.com/galaxyproject/galaxy/commit/20f25f0e35a8ca8b979aa97162692... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-25 (Wed, 25 May 2016)

Changed paths: M lib/galaxy/managers/configuration.py

Log Message: ----------- add communication host/port to the URL

Commit: f8a20cb85fa072bc2539a59c1869599be0137bfd https://github.com/galaxyproject/galaxy/commit/f8a20cb85fa072bc2539a59c18695... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-25 (Wed, 25 May 2016)

Changed paths: A scripts/communication_server.py

Log Message: ----------- add rt-communication server based on flask

Commit: e9642720b81b8ef9aed083b49fb2bc191333b376 https://github.com/galaxyproject/galaxy/commit/e9642720b81b8ef9aed083b49fb2b... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-25 (Wed, 25 May 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js

Log Message: ----------- updating files for real time communication-server and client

Commit: 19d333d427695e11080eee705dc7ad75af5f2cda https://github.com/galaxyproject/galaxy/commit/19d333d427695e11080eee705dc7a... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-26 (Thu, 26 May 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- updated files for real time communication feature addition

Commit: f4273ce56e23be9088b181cf02539be334310cb2 https://github.com/galaxyproject/galaxy/commit/f4273ce56e23be9088b181cf02539... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-26 (Thu, 26 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- updated the chat server client template

Commit: e90de49f584e45cf897fd63cf153dfe1bd251e43 https://github.com/galaxyproject/galaxy/commit/e90de49f584e45cf897fd63cf153d... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-27 (Fri, 27 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Change you to Me, some style fixes,

Commit: fff6c5e519875588abebd1a649e9097c38df28d6 https://github.com/galaxyproject/galaxy/commit/fff6c5e519875588abebd1a649e90... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-27 (Fri, 27 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- updated chat server for few features

Commit: 053e5173cc9c179e3ad3b55177fd4f91c58839dc https://github.com/galaxyproject/galaxy/commit/053e5173cc9c179e3ad3b55177fd4... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-27 (Fri, 27 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- updating the chat client template

Commit: 574136ce3fc518cfafe7c9e984c35b1cb3036fcd https://github.com/galaxyproject/galaxy/commit/574136ce3fc518cfafe7c9e984c35... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-27 (Fri, 27 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- style changes

Commit: b7cb80343607d9af997cb539e2c3fe0239ca2ac3 https://github.com/galaxyproject/galaxy/commit/b7cb80343607d9af997cb539e2c3f... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- added show full chat history feature

Commit: a539846c043d79a605eaa847e00557d2662758d1 https://github.com/galaxyproject/galaxy/commit/a539846c043d79a605eaa847e0055... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Log Message: ----------- added show full chat history feature

Commit: 687f26edf706358ef06a84c6f4ae171575d00a69 https://github.com/galaxyproject/galaxy/commit/687f26edf706358ef06a84c6f4ae1... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- updated full chat history feature and added sent date time

Commit: 69d422ca034841b3fef6ede498f3df82f8ccc40b https://github.com/galaxyproject/galaxy/commit/69d422ca034841b3fef6ede498f3d... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- updated chat template code

Commit: 233c752a0b27cbd98aee99b0cb422f6c119f5e4a https://github.com/galaxyproject/galaxy/commit/233c752a0b27cbd98aee99b0cb422... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js

Log Message: ----------- style changes

Commit: f2ccbc6f6c73786839acb6792c86043337e36ba3 https://github.com/galaxyproject/galaxy/commit/f2ccbc6f6c73786839acb6792c860... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M client/galaxy/scripts/layout/page.js

Log Message: ----------- style changes and only show the icon if the user has activated the communication app inside of user-preferences

Commit: 67bb0874c522db4c7980032bf15eac2924277a11 https://github.com/galaxyproject/galaxy/commit/67bb0874c522db4c7980032bf15ea... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M config/galaxy.ini.sample M lib/galaxy/config.py

Log Message: ----------- add new config parameter to indicate if the communication application is active

Commit: e572be746fc4f93dd3326a41fdd508eaaebe4867 https://github.com/galaxyproject/galaxy/commit/e572be746fc4f93dd3326a41fdd50... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M lib/galaxy/util/__init__.py

Log Message: ----------- Convert "1" also to True inside of string_as_bool()

Commit: cb6f739712d47699ca1196e89d1fea830aeb1868 https://github.com/galaxyproject/galaxy/commit/cb6f739712d47699ca1196e89d1fe... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M lib/galaxy/managers/users.py M lib/galaxy/web/base/controller.py M lib/galaxy/webapps/galaxy/controllers/user.py

Log Message: ----------- add user.preferences to be serialised and available in the client

Commit: 1ba0ef705a4d3f3b7538e68a50b9a66d004273cd https://github.com/galaxyproject/galaxy/commit/1ba0ef705a4d3f3b7538e68a50b9a... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py

Log Message: ----------- remove debug statements

Commit: e6843de2dfc10fae7d47671d9e3cc7d43ebcbbfd https://github.com/galaxyproject/galaxy/commit/e6843de2dfc10fae7d47671d9e3cc... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M templates/user/index.mako

Log Message: ----------- add new change_communication action to the user controller, to offer communication related options to the user preference panel

Commit: c91c4f4089ec2ffc0195bfcb280fbcf5ea6f755a https://github.com/galaxyproject/galaxy/commit/c91c4f4089ec2ffc0195bfcb280fb... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: A templates/user/communication_settings.mako

Log Message: ----------- add communication setting to the user preference panel

Commit: b07cfa887d2e751fe35296d8a39749ac73c2deb2 https://github.com/galaxyproject/galaxy/commit/b07cfa887d2e751fe35296d8a3974... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js

Log Message: ----------- make client updates

Commit: 1dac71a42ded24fd18db005de003f2fd69a3f551 https://github.com/galaxyproject/galaxy/commit/1dac71a42ded24fd18db005de003f... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Merge branch 'rt_comm' of https://github.com/bgruening/galaxy into rt_comm

Commit: 48466e1a84dd5f11e6b4ac03ce657cddf9a49253 https://github.com/galaxyproject/galaxy/commit/48466e1a84dd5f11e6b4ac03ce657... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-28 (Sat, 28 May 2016)

Changed paths: M client/galaxy/scripts/layout/page.js M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/page.js

Log Message: ----------- adjusted previous changes with new ones for the communication server

Commit: 7ea4051820acf61a176f3a5294957d64f5e2577c https://github.com/galaxyproject/galaxy/commit/7ea4051820acf61a176f3a5294957... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- a lot of cleanups

Commit: 267e1fa3813003f9a18b338a892ce99dddd35a18 https://github.com/galaxyproject/galaxy/commit/267e1fa3813003f9a18b338a892ce... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: A static/style/base.css

Log Message: ----------- create symlink

Commit: eb58c101d935fd54e4922f7e5d2e18cc79c61c91 https://github.com/galaxyproject/galaxy/commit/eb58c101d935fd54e4922f7e5d2e1... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: M scripts/communication_server.py A scripts/socket.js

Log Message: ----------- adding socket.js and updating chat server

Commit: 230aa1c106da8f21037f24fa16a5700d54ac9615 https://github.com/galaxyproject/galaxy/commit/230aa1c106da8f21037f24fa16a57... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: R scripts/socket.js

Log Message: ----------- remove socket.js file

Commit: ee647dbe80d57aa6f596833fdcf2b0ab93b2cf9b https://github.com/galaxyproject/galaxy/commit/ee647dbe80d57aa6f596833fdcf2b... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- revert to fetching resources from the URLs and adjusted the size of chat window

Commit: 7abca061f5dca22b9d6ee9a63f29071f9c5b4c82 https://github.com/galaxyproject/galaxy/commit/7abca061f5dca22b9d6ee9a63f290... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- removed disconnet icon and moved the functionality to online status icon

Commit: 915a882ff492bccbb233d18730c060bccafdd122 https://github.com/galaxyproject/galaxy/commit/915a882ff492bccbb233d18730c06... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-29 (Sun, 29 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- css changes

Commit: 0ef409dc1274af7b1530c3823c1c6a9ca4db21d0 https://github.com/galaxyproject/galaxy/commit/0ef409dc1274af7b1530c3823c1c6... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-30 (Mon, 30 May 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- adding close button and updating chat ui

Commit: 4491e6bb4765895a979eaaaf22330f5744f7190a https://github.com/galaxyproject/galaxy/commit/4491e6bb4765895a979eaaaf22330... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-31 (Tue, 31 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- updated server to clean up

Commit: 499f76e1d93bf77aaade47f50c7c1906b8ba31ba https://github.com/galaxyproject/galaxy/commit/499f76e1d93bf77aaade47f50c7c1... Author: anuprulez anup.rulez@gmail.com Date: 2016-05-31 (Tue, 31 May 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- removed a couple of fontawesome icons

Commit: 2831ac80f74486d4126b8694e00939af1d69d095 https://github.com/galaxyproject/galaxy/commit/2831ac80f74486d4126b8694e0093... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-05 (Sun, 05 Jun 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication_server.py M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- adding feature of chat rooms tabs and notification color

Commit: 656b2c5c6857c32c43c9e3a0ec60224cc4166ca0 https://github.com/galaxyproject/galaxy/commit/656b2c5c6857c32c43c9e3a0ec602... Author: Remi Marenco remi.marenco@gmail.com Date: 2016-06-05 (Sun, 05 Jun 2016)

Changed paths: A scripts/communication/template/communication.html M scripts/communication_server.py

Log Message: ----------- Move the html template into a dedicated folder + Add info about button online/offline

Commit: 5b196571425babf004871390e99ed073b775974f https://github.com/galaxyproject/galaxy/commit/5b196571425babf004871390e99ed... Author: Björn Grüning bjoern@gruenings.eu Date: 2016-06-05 (Sun, 05 Jun 2016)

Changed paths: A scripts/communication/template/communication.html M scripts/communication_server.py

Log Message: ----------- Merge pull request #11 from remimarenco/rt_comm

Add info for connection status + extract HTML into a template folder

Commit: 009cbe4cb4c1c79822ef061c7ed52f07d83ae4bb https://github.com/galaxyproject/galaxy/commit/009cbe4cb4c1c79822ef061c7ed52... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication/template/communication.html

Log Message: ----------- added horizontal scroll in case of multiple tabs/rooms

Commit: 7a93c845d6ae4a5a5ce81b484724c7766a31abd4 https://github.com/galaxyproject/galaxy/commit/7a93c845d6ae4a5a5ce81b484724c... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Talk to Galaxy to parse cookies

Commit: 03b5622ab5bc3991d13020ff6c8acd533dbe3d05 https://github.com/galaxyproject/galaxy/commit/03b5622ab5bc3991d13020ff6c8ac... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Debug mode + flask-login

Commit: ca14290dc95fea6d5b0617659a062f38f92578be https://github.com/galaxyproject/galaxy/commit/ca14290dc95fea6d5b0617659a062... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Serve separate files using approved serve method

Commit: e08a7cd39a59e191b430dae01e816ab21c8dd11f https://github.com/galaxyproject/galaxy/commit/e08a7cd39a59e191b430dae01e816... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: A scripts/communication/template/communication.css M scripts/communication/template/communication.html A scripts/communication/template/communication.js M scripts/communication_server.py

Log Message: ----------- Separate out into three files for legibility

Commit: 346f4e21b039050544fbfbafcc841ebcd9997e17 https://github.com/galaxyproject/galaxy/commit/346f4e21b039050544fbfbafcc841... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Tiny reorg, prettier printing

Commit: c4d11500aca3353bb0c6cdddd92bb0de1712f3b8 https://github.com/galaxyproject/galaxy/commit/c4d11500aca3353bb0c6cdddd92bb... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- Refactor to not use client provided usernames

Commit: 67d614e26cf0e8bf138ed9e5172a75dbe9e54aeb https://github.com/galaxyproject/galaxy/commit/67d614e26cf0e8bf138ed9e5172a7... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- Do not trust clients. Also switch to logging from printing

Commit: 8576b634d5f812bd0119f82dcf1cb16e377df68b https://github.com/galaxyproject/galaxy/commit/8576b634d5f812bd0119f82dcf1cb... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-07 (Tue, 07 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- prod ready! (ish)

Commit: d5797fc706c42dc8135cb18d5d7457988a4bbf93 https://github.com/galaxyproject/galaxy/commit/d5797fc706c42dc8135cb18d5d745... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js

Log Message: ----------- Whitespace + fix iframe URL

Commit: 640c5b4c7b6eefdb95382e535283609a86a7b452 https://github.com/galaxyproject/galaxy/commit/640c5b4c7b6eefdb95382e5352836... Author: Björn Grüning bjoern@gruenings.eu Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js A scripts/communication/template/communication.css M scripts/communication/template/communication.html A scripts/communication/template/communication.js M scripts/communication_server.py

Log Message: ----------- Merge pull request #12 from erasche/rt-comm-2

Some small updates for security

Commit: 983328f817ff9da469df1000adc92367b455b015 https://github.com/galaxyproject/galaxy/commit/983328f817ff9da469df1000adc92... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M scripts/communication_server.py

Log Message: ----------- change handling of id_secret slightly

Commit: 0bff02f95ddd19d5cd22ca9a70ca316913fd0f3d https://github.com/galaxyproject/galaxy/commit/0bff02f95ddd19d5cd22ca9a70ca3... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: A scripts/communication/communication_server.py R scripts/communication_server.py

Log Message: ----------- move everything under scripts/communication

Commit: a4970e71cf04acf336c4463c0103a7aa0f8de777 https://github.com/galaxyproject/galaxy/commit/a4970e71cf04acf336c4463c0103a... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M scripts/communication/communication_server.py

Log Message: ----------- adjust path to galaxy-lib

Commit: c79dadd931cdb989197ac78096b98c4163725568 https://github.com/galaxyproject/galaxy/commit/c79dadd931cdb989197ac78096b98... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- client updates

Commit: 4d186982ce9fb907d9d25006dc7646e14e589d32 https://github.com/galaxyproject/galaxy/commit/4d186982ce9fb907d9d25006dc764... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M scripts/communication/communication_server.py

Log Message: ----------- fix a few bugs, we should now be back to buisness

Commit: 3dbd6d8074c44d7cfb333c8b5a49de40e683af9a https://github.com/galaxyproject/galaxy/commit/3dbd6d8074c44d7cfb333c8b5a49d... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M client/galaxy/scripts/layout/page.js

Log Message: ----------- fix error if no user is logged in

Commit: 5a3580c752c45e5a7d68fd742a0b6336a09169ea https://github.com/galaxyproject/galaxy/commit/5a3580c752c45e5a7d68fd742a0b6... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/page.js

Log Message: ----------- client updates

Commit: 6bc64e74263097a969b5d097c9334b41b7b59425 https://github.com/galaxyproject/galaxy/commit/6bc64e74263097a969b5d097c9334... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-08 (Wed, 08 Jun 2016)

Changed paths: M scripts/communication/communication_server.py

Log Message: ----------- enhance documentation

Commit: 74e3e05034e146bfa3b13c177557e78097265bb7 https://github.com/galaxyproject/galaxy/commit/74e3e05034e146bfa3b13c177557e... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-09 (Thu, 09 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- fix js bug

Commit: 043b129c91b3b2b679d4bb4e31db4970c26219e8 https://github.com/galaxyproject/galaxy/commit/043b129c91b3b2b679d4bb4e31db4... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-09 (Thu, 09 Jun 2016)

Changed paths: M scripts/communication/communication_server.py

Log Message: ----------- Merge branch 'rt_comm' of https://github.com/bgruening/galaxy into rt_comm

Commit: 0cd28c72515804f859cb9054a13a157fc8ebf2e6 https://github.com/galaxyproject/galaxy/commit/0cd28c72515804f859cb9054a13a1... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-10 (Fri, 10 Jun 2016)

Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js

Log Message: ----------- Added global chat rooms

Commit: 581108a442ec762dc9d87111f9425c01accc67c5 https://github.com/galaxyproject/galaxy/commit/581108a442ec762dc9d87111f9425... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-10 (Fri, 10 Jun 2016)

Changed paths: M config/galaxy.ini.sample M lib/galaxy/config.py

Log Message: ----------- backend work for persistent chat rooms

Commit: f75189aaaadf697d5759023cdc72fefa8f1d17c8 https://github.com/galaxyproject/galaxy/commit/f75189aaaadf697d5759023cdc72f... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-10 (Fri, 10 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- style cleanups

Commit: e0c4e1cef04cde226bc140a62beb47670a25b85d https://github.com/galaxyproject/galaxy/commit/e0c4e1cef04cde226bc140a62beb4... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-11 (Sat, 11 Jun 2016)

Changed paths: M lib/galaxy/managers/configuration.py

Log Message: ----------- access the list of persistent chat rooms via Galaxy.config object

Commit: 80ee76cb39c06f8a922e3fbcf9930711c3eeb6ce https://github.com/galaxyproject/galaxy/commit/80ee76cb39c06f8a922e3fbcf9930... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-11 (Sat, 11 Jun 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- Adding persistent rooms from config

Commit: 074fefeda2b10accec700e250e516aa8bd9e6a0b https://github.com/galaxyproject/galaxy/commit/074fefeda2b10accec700e250e516... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-13 (Mon, 13 Jun 2016)

Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js

Log Message: ----------- Adding features-space enabled chat room names, ctrl+l for chat log deletion, removing delete icon, smooth transition on window load and code cleanup

Commit: f034f1778b7482e182f8a03d6c53774361875b56 https://github.com/galaxyproject/galaxy/commit/f034f1778b7482e182f8a03d6c537... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-14 (Tue, 14 Jun 2016)

Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.js

Log Message: ----------- make the communication window more packed

Commit: 111a1c62223d4d252f91f5bed5f009bf3c58bd2e https://github.com/galaxyproject/galaxy/commit/111a1c62223d4d252f91f5bed5f00... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-14 (Tue, 14 Jun 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- Fixing the issue with persistent room names with spaces, adding fancy scroll bar, buttons instead of links for persistent rooms and UI changes for message area

Commit: 5ed647e34f69fb3ab05982a135fa2be7f65310f5 https://github.com/galaxyproject/galaxy/commit/5ed647e34f69fb3ab05982a135fa2... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M scripts/communication/communication_server.py

Log Message: ----------- release preparation

Commit: f27e80e46dd1a1af7991fe1fc62a428dbbe49715 https://github.com/galaxyproject/galaxy/commit/f27e80e46dd1a1af7991fe1fc62a4... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py

Log Message: ----------- fix documenation

Commit: 52e1918e9e2807f30c0c5a64d9493d5a766f6312 https://github.com/galaxyproject/galaxy/commit/52e1918e9e2807f30c0c5a64d9493... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map

Log Message: ----------- add

Commit: b18decddda86ddc0fa7a813c1bad64722123da83 https://github.com/galaxyproject/galaxy/commit/b18decddda86ddc0fa7a813c1bad6... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M static/maps/layout/menu.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js

Log Message: ----------- client updates

Commit: b8a92a3f80661f2b729160163343034216616e53 https://github.com/galaxyproject/galaxy/commit/b8a92a3f80661f2b7291601633430... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M scripts/communication/template/communication.html M scripts/communication/template/communication.js

Log Message: ----------- Fixing issue with no persistent rooms

Commit: ab43e094c2c7f5d3c5ba6d2e82af3f7c5fd52970 https://github.com/galaxyproject/galaxy/commit/ab43e094c2c7f5d3c5ba6d2e82af3... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M lib/galaxy/web/framework/middleware/remoteuser.py

Log Message: ----------- Allow changing settings under remote_user

Commit: 83e61f1ca4c16b5383b7ae0dba36c1b0aab2dce8 https://github.com/galaxyproject/galaxy/commit/83e61f1ca4c16b5383b7ae0dba36c... Author: Eric Rasche rasche.eric@gmail.com Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M scripts/communication/communication_server.py M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js

Log Message: ----------- Support gravatar and rework template

Commit: 0d9865b5c56c1d6e7d0f15c8e566e1b30fffd2f3 https://github.com/galaxyproject/galaxy/commit/0d9865b5c56c1d6e7d0f15c8e566e... Author: Björn Grüning bjoern@gruenings.eu Date: 2016-06-18 (Sat, 18 Jun 2016)

Changed paths: M lib/galaxy/web/framework/middleware/remoteuser.py M scripts/communication/communication_server.py M scripts/communication/template/communication.css M scripts/communication/template/communication.html M scripts/communication/template/communication.js

Log Message: ----------- Merge pull request #14 from erasche/rt_comm-gravatar

Gravatar suppot

Commit: 4a304b63b12073dc2c82e811fa9acde04337170b https://github.com/galaxyproject/galaxy/commit/4a304b63b12073dc2c82e811fa9ac... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/communication_server.py

Log Message: ----------- fix pep8

Commit: b690abb46a03c1d622e8395ae6d4752952354861 https://github.com/galaxyproject/galaxy/commit/b690abb46a03c1d622e8395ae6d47... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- make chat view a little bit more compact and fix bug in displaying "me" messages

Commit: c017b516663a312a866fd3000547982838a67b8a https://github.com/galaxyproject/galaxy/commit/c017b516663a312a866fd30005479... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.js

Log Message: ----------- Fixed UI issues and log deletion functionality in main tab

Commit: e477d728d407cde21449549c5e464da8b54044f0 https://github.com/galaxyproject/galaxy/commit/e477d728d407cde21449549c5e464... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- do not show gravatar for server messages

Commit: 10c2764f097beb1b5c2b221377424002c698d7ca https://github.com/galaxyproject/galaxy/commit/10c2764f097beb1b5c2b221377424... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- add the identicon to gravatar

Commit: feb00567e4f08970be67f75ccee8df7940b9067a https://github.com/galaxyproject/galaxy/commit/feb00567e4f08970be67f75ccee8d... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.css M scripts/communication/template/communication.js

Log Message: ----------- Adjusted the vertical position of gravatar icons

Commit: 008220d88d4d2699f901b9e2e656afd7510473c0 https://github.com/galaxyproject/galaxy/commit/008220d88d4d2699f901b9e2e656a... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.js

Log Message: ----------- Adjusted the vertical position of gravatar icons

Commit: 464e9a42615bed11197a43fbd082f0c31076ca71 https://github.com/galaxyproject/galaxy/commit/464e9a42615bed11197a43fbd082f... Author: anuprulez anup.rulez@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M scripts/communication/template/communication.html M scripts/communication/template/communication.js

Log Message: ----------- Fixed issue with Firefox auto scrolling

Commit: 1f1c35f70873b87e0923fc04b1c11d546e100a04 https://github.com/galaxyproject/galaxy/commit/1f1c35f70873b87e0923fc04b1c11... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M .gitignore M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M config/galaxy.ini.sample M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/users.py M lib/galaxy/util/__init__.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/controllers/user.py A scripts/communication/communication_server.py A scripts/communication/template/communication.css A scripts/communication/template/communication.html A scripts/communication/template/communication.js M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/scripts/layout/page.js A static/style/base.css A templates/user/communication_settings.mako M templates/user/index.mako

Log Message: ----------- merge

Commit: 474a8889e346b21f24d557880929b9c0eb989a8a https://github.com/galaxyproject/galaxy/commit/474a8889e346b21f24d557880929b... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map

Log Message: ----------- update client

Commit: b81034554377d3e0a3f971eae579c42a032c0685 https://github.com/galaxyproject/galaxy/commit/b81034554377d3e0a3f971eae579c... Author: Björn Grüning bjoern@gruenings.eu Date: 2016-06-19 (Sun, 19 Jun 2016)

Changed paths: M lib/galaxy/webapps/galaxy/controllers/user.py

Log Message: ----------- fix pep8 warning

Commit: 93c33b4188548ff4575befcbb5b7787585085364 https://github.com/galaxyproject/galaxy/commit/93c33b4188548ff4575befcbb5b77... Author: anuprulez anup.rulez@gmail.com Date: 2016-07-10 (Sun, 10 Jul 2016)

Changed paths: M client/galaxy/scripts/layout/menu.js M client/galaxy/style/less/base.less M static/maps/layout/menu.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/layout/menu.js M static/style/blue/base.css

Log Message: ----------- A bit of clean of menu.js for the chat tab

Commit: 66c3e418a6d55fbee8211a95fb0913e7e0418b17 https://github.com/galaxyproject/galaxy/commit/66c3e418a6d55fbee8211a95fb091... Author: anuprulez anup.rulez@gmail.com Date: 2016-07-10 (Sun, 10 Jul 2016)

Changed paths: A client/galaxy/scripts/layout/generic-nav-view.js

Log Message: ----------- Adding generic nav view

Commit: ff23df05216750b5df4c7f2050fe30f009d24832 https://github.com/galaxyproject/galaxy/commit/ff23df05216750b5df4c7f2050fe3... Author: anuprulez anup.rulez@gmail.com Date: 2016-07-10 (Sun, 10 Jul 2016)

Changed paths: M static/maps/layout/menu.js.map

Log Message: ----------- adding static menu map file

Commit: 28744e1235a0decc26f2fb5545f4946e6cece25a https://github.com/galaxyproject/galaxy/commit/28744e1235a0decc26f2fb5545f49... Author: anatskiy evgeny.anatskiy@gmail.com Date: 2016-07-10 (Sun, 10 Jul 2016)

Changed paths: M .gitignore

Log Message: ----------- ignore IDEA files

Commit: 0d915ce131e1928fe1feab82633ef6bf90ebce0f https://github.com/galaxyproject/galaxy/commit/0d915ce131e1928fe1feab82633ef... Author: anuprulez anup.rulez@gmail.com Date: 2016-07-14 (Thu, 14 Jul 2016)

Changed paths: M client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/style/less/base.less M scripts/communication/template/communication.css M scripts/communication/template/communication.js M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/style/blue/base.css

Log Message: ----------- Adding maximize/minimize feature to the communication channel

Commit: 5b0641fe4a5dc681b75a357f04578f7b53ccb733 https://github.com/galaxyproject/galaxy/commit/5b0641fe4a5dc681b75a357f04578... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-07-22 (Fri, 22 Jul 2016)

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Log Message: ----------- Merge branch 'dev' of https://github.com/galaxyproject/galaxy into dev

Commit: 6b8b0cde5b6a2725177e409ebc84ba1591f5bd40 https://github.com/galaxyproject/galaxy/commit/6b8b0cde5b6a2725177e409ebc84b... Author: Bjoern Gruening bjoern.gruening@gmail.com Date: 2016-07-22 (Fri, 22 Jul 2016)

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lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py M run_tests.sh M scripts/api/data_manager_example_execute.py M scripts/api/example_watch_folder.py M scripts/api/form_create_from_xml.py M scripts/api/history_create_history.py M scripts/api/history_delete_history.py M scripts/api/import_library_dataset_to_history.py M scripts/api/import_workflows_from_installed_tool_shed_repository.py M scripts/api/library_create_folder.py M scripts/api/library_create_library.py M scripts/api/library_upload_from_import_dir.py M scripts/api/load_data_with_metadata.py M scripts/api/repair_tool_shed_repository.py M scripts/api/request_type_create_from_xml.py M scripts/api/requests_update_state.py M scripts/api/sample_dataset_update_status.py M scripts/api/sample_update_state.py M scripts/api/search.py M scripts/api/sequencer_configuration_create.py M scripts/api/upload_to_history.py M scripts/api/workflow_delete.py M scripts/api/workflow_execute.py M scripts/api/workflow_import.py M scripts/api/workflow_import_from_file_rpark.py M scripts/bootstrap_history.py M scripts/build_toolbox.py M scripts/check_galaxy.py M scripts/check_python.py M scripts/cleanup_datasets/pgcleanup.py M scripts/cleanup_datasets/populate_uuid.py M scripts/cleanup_datasets/remove_renamed_datasets_from_disk.py M scripts/cleanup_datasets/rename_purged_datasets.py M scripts/cleanup_datasets/update_dataset_size.py M scripts/cleanup_datasets/update_metadata.py M scripts/common_startup.sh M scripts/data_libraries/build_whoosh_index.py M scripts/db_shell.py M scripts/drmaa_external_runner.py M scripts/fetch_eggs.py A scripts/grt.py A scripts/grt.yml.sample M scripts/set_dataset_sizes.py M setup.cfg A static/maps/layout/generic-nav-view.js.map M static/maps/mvc/collection/collection-li.js.map M static/maps/mvc/collection/collection-model.js.map M static/maps/mvc/collection/collection-view-edit.js.map M static/maps/mvc/collection/collection-view.js.map M static/maps/mvc/dataset/data.js.map M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-parameters.js.map M static/maps/mvc/form/form-repeat.js.map M static/maps/mvc/form/form-section.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/history/hdca-li-edit.js.map M static/maps/mvc/history/hdca-li.js.map M static/maps/mvc/history/hdca-model.js.map M static/maps/mvc/history/history-contents.js.map M static/maps/mvc/tool/tool-form-composite.js.map M static/maps/mvc/tool/tool-template.js.map M static/maps/mvc/ui/ui-buttons.js.map M static/maps/mvc/ui/ui-misc.js.map M static/maps/mvc/ui/ui-select-content.js.map M static/maps/mvc/ui/ui-select-default.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/mvc/upload/default/default-view.js.map M static/maps/mvc/upload/upload-button.js.map M static/maps/mvc/upload/upload-view.js.map M static/maps/viz/trackster/painters.js.map M static/maps/viz/trackster/tracks.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map A static/scripts/layout/generic-nav-view.js M static/scripts/mvc/collection/collection-li.js M static/scripts/mvc/collection/collection-model.js M static/scripts/mvc/collection/collection-view-edit.js M static/scripts/mvc/collection/collection-view.js M static/scripts/mvc/dataset/data.js M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-parameters.js M static/scripts/mvc/form/form-repeat.js M static/scripts/mvc/form/form-section.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/history/hdca-li-edit.js M static/scripts/mvc/history/hdca-li.js M static/scripts/mvc/history/hdca-model.js M static/scripts/mvc/history/history-contents.js M static/scripts/mvc/tool/tool-form-composite.js M static/scripts/mvc/tool/tool-template.js M static/scripts/mvc/ui/ui-buttons.js M static/scripts/mvc/ui/ui-misc.js M static/scripts/mvc/ui/ui-select-content.js M static/scripts/mvc/ui/ui-select-default.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/mvc/upload/default/default-view.js M static/scripts/mvc/upload/upload-button.js M static/scripts/mvc/upload/upload-view.js M static/scripts/viz/trackster/painters.js M static/scripts/viz/trackster/tracks.js M static/style/blue/base.css M templates/admin/impersonate.mako M templates/ind_share_base.mako M templates/user/change_password.mako M templates/webapps/galaxy/dataset/copy_view.mako M templates/webapps/galaxy/history/grid.mako M templates/webapps/galaxy/library/common/import_datasets_to_histories.mako M test/api/helpers.py M test/api/test_datasets.py M test/api/test_tool_data.py M test/api/test_tools.py M test/api/test_users.py M test/api/test_workflow_extraction.py M test/api/test_workflows.py A test/functional/tools/identifier_collection.xml A test/functional/tools/output_filter_exception_1.xml M test/functional/tools/samples_tool_conf.xml M test/qunit/tests/ui_tests.js M test/qunit/tests/upload_dialog_tests.js M test/shed_functional/base/twilltestcase.py M test/shed_functional/functional_tests.py M test/unit/datatypes/dataproviders/test_base_dataproviders.py M test/unit/datatypes/dataproviders/test_line_dataproviders.py A test/unit/datatypes/test_data.py A test/unit/jobs/dynamic_tool_destination/__init__.py A test/unit/jobs/dynamic_tool_destination/data/dest_fail.yml A test/unit/jobs/dynamic_tool_destination/data/priority_tool_destination.yml A test/unit/jobs/dynamic_tool_destination/data/test.empty A test/unit/jobs/dynamic_tool_destination/data/test.fasta A test/unit/jobs/dynamic_tool_destination/data/test1.full A test/unit/jobs/dynamic_tool_destination/data/test3.full A test/unit/jobs/dynamic_tool_destination/data/test_no_verbose.yml A test/unit/jobs/dynamic_tool_destination/data/test_num_input_datasets.yml A test/unit/jobs/dynamic_tool_destination/data/test_users.yml A test/unit/jobs/dynamic_tool_destination/data/tool_destination.yml A test/unit/jobs/dynamic_tool_destination/mockGalaxy.py A test/unit/jobs/dynamic_tool_destination/test_dynamic_tool_destination.py A test/unit/jobs/dynamic_tool_destination/ymltests.py M test/unit/managers/base.py M test/unit/managers/test_DatasetManager.py M test/unit/managers/test_HDAManager.py M test/unit/managers/test_HDCAManager.py M test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py M test/unit/managers/test_UserManager.py M test/unit/test_galaxy_mapping.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_toolbox.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/base/test_HookPluginManager.py M test/unit/web/base/test_PageServingPluginManager.py M test/unit/web/base/test_PluginManager.py M tools/stats/aggregate_scores_in_intervals.py M tools/stats/gsummary.xml M tox.ini

Log Message: ----------- make client

Commit: b0566ad9ce8daf42a10bd013f7bd5d9efdfc4fa4 https://github.com/galaxyproject/galaxy/commit/b0566ad9ce8daf42a10bd013f7bd5... Author: Björn Grüning bjoern@gruenings.eu Date: 2016-07-23 (Sat, 23 Jul 2016)

Changed paths: M .gitignore A client/galaxy/scripts/layout/generic-nav-view.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/page.js M client/galaxy/style/less/base.less M config/galaxy.ini.sample M lib/galaxy/config.py M lib/galaxy/managers/configuration.py M lib/galaxy/managers/users.py M lib/galaxy/util/__init__.py M lib/galaxy/web/base/controller.py M lib/galaxy/web/framework/middleware/remoteuser.py M lib/galaxy/webapps/galaxy/controllers/user.py A scripts/communication/communication_server.py A scripts/communication/template/communication.css A scripts/communication/template/communication.html A scripts/communication/template/communication.js A static/maps/layout/generic-nav-view.js.map M static/maps/layout/menu.js.map M static/maps/layout/page.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map A static/scripts/layout/generic-nav-view.js M static/scripts/layout/menu.js M static/scripts/layout/page.js A static/style/base.css M static/style/blue/base.css A templates/user/communication_settings.mako M templates/user/index.mako

Log Message: ----------- Merge pull request #2515 from bgruening/realtime_communication

Add a simple Galaxy Communication Server for realtime communication between Galaxy users.

Compare: https://github.com/galaxyproject/galaxy/compare/47522208c6d7...b0566ad9ce8d