Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 18b4274e651f85db2019faba0674613ef02921aa https://github.com/galaxyproject/galaxy/commit/18b4274e651f85db2019faba06746... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-06 (Sat, 06 Oct 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M test/base/populators.py R test/base/workflows_format_2/README.txt R test/base/workflows_format_2/__init__.py R test/base/workflows_format_2/converter.py R test/base/workflows_format_2/interface.py R test/base/workflows_format_2/main.py Log Message: ----------- Import gxformat2 as an external dependency. Commit: 319c29937e30075d0dab45bca87577fd86bc7492 https://github.com/galaxyproject/galaxy/commit/319c29937e30075d0dab45bca8757... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-06 (Sat, 06 Oct 2018) Changed paths: M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py Log Message: ----------- gxformat2 - allow CWL style 'in' declarations for step connections. Makes gxformat2 look a lot closer to CWL workflows with Galaxy tools and state. Commit: c7fa2860d807229ebb29233d99c545534f3d7079 https://github.com/galaxyproject/galaxy/commit/c7fa2860d807229ebb29233d99c54... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-06 (Sat, 06 Oct 2018) Changed paths: M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py Log Message: ----------- Toward new format2 syntaxes in test workflows. Commit: d010077830ccdf2c28e978bc65c9871db646f880 https://github.com/galaxyproject/galaxy/commit/d010077830ccdf2c28e978bc65c98... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-06 (Sat, 06 Oct 2018) Changed paths: M lib/galaxy/workflow/modules.py M test/api/test_workflows_from_yaml.py Log Message: ----------- Allow workflow import of workflows with connections that don't have matching empty tool state entries. There is a long conversation in the added doc string. Commit: 7d9093d5ab308301e2ec9e464ce8e7cfbeba77ea https://github.com/galaxyproject/galaxy/commit/7d9093d5ab308301e2ec9e464ce8e... Author: Marius van den Beek <m.vandenbeek@gmail.com> Date: 2018-10-07 (Sun, 07 Oct 2018) Changed paths: M lib/galaxy/dependencies/pipfiles/default/Pipfile M lib/galaxy/dependencies/pipfiles/default/pinned-requirements.txt M lib/galaxy/workflow/modules.py M test/api/test_workflows.py M test/api/test_workflows_from_yaml.py M test/base/populators.py R test/base/workflows_format_2/README.txt R test/base/workflows_format_2/__init__.py R test/base/workflows_format_2/converter.py R test/base/workflows_format_2/interface.py R test/base/workflows_format_2/main.py Log Message: ----------- Merge pull request #6807 from jmchilton/gxformat2_030 Support for Enhancements to gxformat2. Compare: https://github.com/galaxyproject/galaxy/compare/10e984ce85c2...7d9093d5ab30 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.