Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: bcc3d7fcddac1926af4f3d2192877071ea9b0db3 https://github.com/galaxyproject/galaxy/commit/bcc3d7fcddac1926af4f3d2192877... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/forms/default.js M config/plugins/visualizations/charts/static/charts/nvd3/bar/config.js M config/plugins/visualizations/charts/static/charts/types.js M config/plugins/visualizations/charts/static/views/settings.js

Log Message: ----------- Align chart form definitions, swap custom settings form with regular form view

Commit: b1fb1cff98f3a756bd02643459eda4468237ada8 https://github.com/galaxyproject/galaxy/commit/b1fb1cff98f3a756bd02643459eda... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map

Log Message: ----------- Match initial form values, remove settings customization

Commit: fb075e15a9c7e73430ff049b33ee4e6543ab47f3 https://github.com/galaxyproject/galaxy/commit/fb075e15a9c7e73430ff049b33ee4... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-view.js M config/plugins/visualizations/charts/static/charts/forms/default.js A config/plugins/visualizations/charts/static/charts/forms/inputs.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/line/config.js M config/plugins/visualizations/charts/static/charts/nvd3/line_focus/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/nvd3/scatter/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/config.js M config/plugins/visualizations/charts/static/charts/types.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M config/plugins/visualizations/charts/templates/charts.mako M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-view.js

Log Message: ----------- Use regular form definitions for all nvd3 charts

Commit: 67b7516615fb785bcdd05e06827c329856918ccb https://github.com/galaxyproject/galaxy/commit/67b7516615fb785bcdd05e06827c3... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-view.js M config/plugins/visualizations/charts/static/charts/forms/default.js M config/plugins/visualizations/charts/static/charts/forms/inputs.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-view.js

Log Message: ----------- Revise groups form building

Repack

Commit: 4d81e6f3ebc8ac0e9c10f109796887b673d66702 https://github.com/galaxyproject/galaxy/commit/4d81e6f3ebc8ac0e9c10f10979688... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/types.js

Log Message: ----------- Fix histogram configuration

Commit: 118c397304802763d75b3289cb15071482b8d953 https://github.com/galaxyproject/galaxy/commit/118c397304802763d75b3289cb150... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/ui/ui-color-picker.js M config/plugins/visualizations/charts/static/charts/forms/inputs.js M config/plugins/visualizations/charts/static/views/settings.js M static/maps/mvc/ui/ui-color-picker.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-color-picker.js

Log Message: ----------- Revise color picker, fix settings form

Commit: bda8ba737d3c60fae30541965165caab611cefbb https://github.com/galaxyproject/galaxy/commit/bda8ba737d3c60fae30541965165c... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M static/maps/mvc/form/form-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-view.js

Log Message: ----------- Avoid uneccessary re-rendering of form

Commit: 6698f90145b02b3fcaa52fa8926ede4c3bc4b4ea https://github.com/galaxyproject/galaxy/commit/6698f90145b02b3fcaa52fa8926ed... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/ui/ui-color-picker.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/jqplot/scatter/config.js M config/plugins/visualizations/charts/static/views/editor.js M static/maps/mvc/ui/ui-color-picker.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-color-picker.js

Log Message: ----------- Map settings when chart type changes

Commit: 3f0cf73eba1341ba25a72ae424f26e99ccd02309 https://github.com/galaxyproject/galaxy/commit/3f0cf73eba1341ba25a72ae424f26... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/editor.js

Log Message: ----------- Revise error message

Commit: 5ea8d035c9c3441f5314e9d281df53986af45d54 https://github.com/galaxyproject/galaxy/commit/5ea8d035c9c3441f5314e9d281df5... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/viewer.js

Log Message: ----------- Remove unused libraries from group view

Commit: e3bb8580b00ea3a9d57c54ced445a6c4d7c0783b https://github.com/galaxyproject/galaxy/commit/e3bb8580b00ea3a9d57c54ced445a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/models/chart.js M config/plugins/visualizations/charts/static/views/editor.js

Log Message: ----------- Revise chart resetting mechanism

Commit: 3d423f2dadfccee76840140c45e80e50a8316fff https://github.com/galaxyproject/galaxy/commit/3d423f2dadfccee76840140c45e80... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.js

Log Message: ----------- Revise page viewing caller

Commit: ff210c067763987bad2574a8996bbd8466c5485f https://github.com/galaxyproject/galaxy/commit/ff210c067763987bad2574a8996bb... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/library/storage.js

Log Message: ----------- Refactor storage handler

Commit: d952e876e5bf03c9fedfeff59e706d42decc21b6 https://github.com/galaxyproject/galaxy/commit/d952e876e5bf03c9fedfeff59e706... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M static/maps/mvc/form/form-data.js.map

Log Message: ----------- Populate input states for settings and group forms

Commit: b23b18c3027685ae8a44f1294152e839d01440c8 https://github.com/galaxyproject/galaxy/commit/b23b18c3027685ae8a44f1294152e... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/utils/utils.js M config/plugins/visualizations/charts/static/models/chart.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-view.js.map M static/maps/utils/utils.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-view.js M static/scripts/utils/utils.js

Log Message: ----------- Populate input states for settings and group forms

Commit: 183cbec3a6c1b2b25f4b11284f6d4c730de488a0 https://github.com/galaxyproject/galaxy/commit/183cbec3a6c1b2b25f4b11284f6d4... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/bar/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/jqplot/line/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js

Log Message: ----------- More config clean up

Commit: 2fa3f2e801c59b8da08ba802eba599485cf217e6 https://github.com/galaxyproject/galaxy/commit/2fa3f2e801c59b8da08ba802eba59... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/types.js

Log Message: ----------- Reactivate chart types

Commit: a78a398e57cecc67dc4a62f5fa23a06a0a0b146b https://github.com/galaxyproject/galaxy/commit/a78a398e57cecc67dc4a62f5fa23a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/bar/config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/plot-config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js

Log Message: ----------- Fix precision handling in graph wrappers

Commit: 9f4fc82a1442da4697fc8240320bf1bdb2cb8edc https://github.com/galaxyproject/galaxy/commit/9f4fc82a1442da4697fc8240320bf... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/bar/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/line/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/line_focus/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/scatter/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/wrapper.js

Log Message: ----------- Cleanup wrappers

Commit: 2cf0bb642b5264cd6be0dd214947f57597acd5a4 https://github.com/galaxyproject/galaxy/commit/2cf0bb642b5264cd6be0dd214947f... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-parameters.js M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-plugin.js M config/plugins/visualizations/charts/static/charts/others/heatmap/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js

Log Message: ----------- Adjust heatmap wrappers and configurations

Commit: 972c5c0ce0ee1151b50d206f1edd8ef494090a23 https://github.com/galaxyproject/galaxy/commit/972c5c0ce0ee1151b50d206f1edd8... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/utils/utils.js M static/maps/utils/utils.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/utils/utils.js

Log Message: ----------- Revise cloning method

Commit: 015b684ab076dc6e9712deb8f6dcd41d811b772c https://github.com/galaxyproject/galaxy/commit/015b684ab076dc6e9712deb8f6dcd... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js

Log Message: ----------- Fix jqplot options

Commit: e4000b1dc28458d75a751c00f3418ef292bdee96 https://github.com/galaxyproject/galaxy/commit/e4000b1dc28458d75a751c00f3418... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/forms/default.js M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js

Log Message: ----------- Fix default label value, histogram color picker

Commit: d370d56264763c1e9a36714caeb3ca936379e1aa https://github.com/galaxyproject/galaxy/commit/d370d56264763c1e9a36714caeb3c... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js

Log Message: ----------- Fix heatmap panel option

Commit: 322ebe0badc19766d50b58556dd682c3b425113d https://github.com/galaxyproject/galaxy/commit/322ebe0badc19766d50b58556dd68... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js

Log Message: ----------- Fix comments

Commit: 48e3f3c4f7172ade82cf0c6d1f5464e163ec357e https://github.com/galaxyproject/galaxy/commit/48e3f3c4f7172ade82cf0c6d1f546... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/config.js M config/plugins/visualizations/charts/static/views/types.js M static/maps/mvc/form/form-data.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js

Log Message: ----------- Use libraries instead of data point sizes to filter list of visualization types

Commit: 600a4177f00799ff6578005a5a8ae00427b45c21 https://github.com/galaxyproject/galaxy/commit/600a4177f00799ff6578005a5a8ae... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/types.js

Log Message: ----------- Add description for jqplots

Commit: f4f82f61b0771ee5089d28ef0787a36748a3befa https://github.com/galaxyproject/galaxy/commit/f4f82f61b0771ee5089d28ef0787a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: A config/plugins/visualizations/charts/static/charts/overview.js M config/plugins/visualizations/charts/static/views/types.js

Log Message: ----------- Separate library overview dictionary

Commit: 8f2bceebffc2fea12aa353320e5f21e61bf61e83 https://github.com/galaxyproject/galaxy/commit/8f2bceebffc2fea12aa353320e5f2... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-view.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-plugin.js M config/plugins/visualizations/charts/static/charts/others/heatmap/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js R config/plugins/visualizations/charts/static/charts/tools.js A config/plugins/visualizations/charts/static/charts/utilities.js M static/maps/mvc/form/form-view.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-view.js

Log Message: ----------- Rename tools to utilities

Commit: 38fc18f25f55e8693d057127a7764c5a48632e7c https://github.com/galaxyproject/galaxy/commit/38fc18f25f55e8693d057127a7764... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/overview.js

Log Message: ----------- Redirect to new browser tab when visiting 3rd party library links

Commit: e385eec3b50df1ede7788e194667229a2450ff09 https://github.com/galaxyproject/galaxy/commit/e385eec3b50df1ede7788e1946672... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/bar/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/line/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/scatter/wrapper.js M config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Clean dataset handling

Commit: 2ef4584487cf9f385d16670c2bbf6415af74ab76 https://github.com/galaxyproject/galaxy/commit/2ef4584487cf9f385d16670c2bbf6... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities.js

Log Message: ----------- Clean utilities

Commit: 6d3a9e60512f91fbe6f1261311ef7fb8f0feec46 https://github.com/galaxyproject/galaxy/commit/6d3a9e60512f91fbe6f1261311ef7... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities.js

Log Message: ----------- Fix spacing

Commit: 5f292489d9ca60ed2a022ffa332219d93f2a735f https://github.com/galaxyproject/galaxy/commit/5f292489d9ca60ed2a022ffa33221... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.js M config/plugins/visualizations/charts/static/charts/forms/default.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js M config/plugins/visualizations/charts/static/charts/utilities.js M config/plugins/visualizations/charts/static/library/jobs.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/viewport.js

Log Message: ----------- Decouple dataset type from charts

Commit: 171dbbcc25303fa374fec1ada2e424a15914b06c https://github.com/galaxyproject/galaxy/commit/171dbbcc25303fa374fec1ada2e42... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/groups.js

Log Message: ----------- Revise group wrapper

Commit: c61014515221bad676d9800936fe8ad2208b982b https://github.com/galaxyproject/galaxy/commit/c61014515221bad676d9800936fe8... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/library/jobs.js

Log Message: ----------- Revise job submission to charts tool

Commit: 9bb7360dfbeb08a66a24b10593144c0cf441c70b https://github.com/galaxyproject/galaxy/commit/9bb7360dfbeb08a66a24b10593144... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/library/jobs.js

Log Message: ----------- Explicitly specify charts tool module within wrapper

Commit: 12f87efb59c16fb6b011ba2a800cde11d29720d1 https://github.com/galaxyproject/galaxy/commit/12f87efb59c16fb6b011ba2a800cd... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/utilities.js M config/plugins/visualizations/charts/static/library/jobs.js

Log Message: ----------- Remove execute tag from chart config

Commit: 13d35ba8eae6674f496c0abe8bad0fe8993d1576 https://github.com/galaxyproject/galaxy/commit/13d35ba8eae6674f496c0abe8bad0... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js

Log Message: ----------- Revise histogram wrapper

Commit: 18eb032dd0a68b37cb2fc1a166293af00785a564 https://github.com/galaxyproject/galaxy/commit/18eb032dd0a68b37cb2fc1a166293... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js M config/plugins/visualizations/charts/static/charts/utilities.js

Log Message: ----------- Rename request dictionary builder

Commit: 024122a778ca6005d2459799b957ad70cb8c3f7b https://github.com/galaxyproject/galaxy/commit/024122a778ca6005d2459799b957a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-19 (Fri, 19 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities.js

Log Message: ----------- Add comment to panel helper

Commit: f4f5abd9f7caaf3a958810107dac652a0b207314 https://github.com/galaxyproject/galaxy/commit/f4f5abd9f7caaf3a958810107dac6... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/library/datasets.js M config/plugins/visualizations/charts/static/views/groups.js

Log Message: ----------- Use separate function to call dataset handler

Commit: 97e0b7942814ee3979c8e546fa383330c125c1c8 https://github.com/galaxyproject/galaxy/commit/97e0b7942814ee3979c8e546fa383... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Revise data block fetching

Commit: 46b9d21a2d886485efd147b24caf26477297c9fa https://github.com/galaxyproject/galaxy/commit/46b9d21a2d886485efd147b24caf2... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities.js M config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Remove unused recursion and block caching features

Commit: fbb65bfc3f4c196cc117ae73f26648dc027650ab https://github.com/galaxyproject/galaxy/commit/fbb65bfc3f4c196cc117ae73f2664... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Fix log labels

Commit: 9288b6b8a940b74bad19f572459b366dd25b9b92 https://github.com/galaxyproject/galaxy/commit/9288b6b8a940b74bad19f572459b3... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Remove unused variables

Commit: 5275f71d68d894ebdbf8265546a11ff563b32b5d https://github.com/galaxyproject/galaxy/commit/5275f71d68d894ebdbf8265546a11... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities.js M config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Clone result dictionary before filling column data

Commit: 4683302479c153305e835bee5318237c4e331716 https://github.com/galaxyproject/galaxy/commit/4683302479c153305e835bee53182... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/config.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js

Log Message: ----------- Align other executable chart types

Commit: d1b0c4ddc10ff6a80c1953b98b9867f92d1ce4b9 https://github.com/galaxyproject/galaxy/commit/d1b0c4ddc10ff6a80c1953b98b986... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/library/datasets.js M config/plugins/visualizations/charts/static/views/groups.js

Log Message: ----------- Remove dataset get caller

Commit: 26351f1b1574fb65c69a25fdca3cf2a9de7f581f https://github.com/galaxyproject/galaxy/commit/26351f1b1574fb65c69a25fdca3cf... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: R config/plugins/visualizations/charts/static/charts/forms/default.js R config/plugins/visualizations/charts/static/charts/forms/inputs.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js R config/plugins/visualizations/charts/static/charts/utilities.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-datasets.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-form.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-inputs.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-jobs.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-utilities.js R config/plugins/visualizations/charts/static/library/jobs.js

Log Message: ----------- Move tabular specific features into utilities directory

Commit: f43a5e373b717db5b7ae7ae65c6c8a07f15045d4 https://github.com/galaxyproject/galaxy/commit/f43a5e373b717db5b7ae7ae65c6c8... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-datasets.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-utilities.js R config/plugins/visualizations/charts/static/library/datasets.js

Log Message: ----------- Move dataset handler to tabular specific location

Commit: defb1bced431b44702c021449a973a45dd84f2c8 https://github.com/galaxyproject/galaxy/commit/defb1bced431b44702c021449a973... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-utilities.js

Log Message: ----------- Remove unused app parsing to utilities

Commit: d9e47910684ea0da320aa82868ae705c489946f6 https://github.com/galaxyproject/galaxy/commit/d9e47910684ea0da320aa82868ae7... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-jobs.js

Log Message: ----------- Fix jqplot histogram wrapper

Commit: 4b604bd1e1a8b8c102828917fb62e45aa0be6dfc https://github.com/galaxyproject/galaxy/commit/4b604bd1e1a8b8c102828917fb62e... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/types.js

Log Message: ----------- Add discrete history visualization for nvd3

Commit: b6eb08a418c2c0f5c5924991bc4e262c24c3e69e https://github.com/galaxyproject/galaxy/commit/b6eb08a418c2c0f5c5924991bc4e2... Author: guerler aysam.guerler@gmail.com Date: 2016-08-20 (Sat, 20 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.css M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js M config/plugins/visualizations/charts/static/views/viewer.js

Log Message: ----------- Fix message style, properly reject failed job submissions

Commit: 2073114b68937ab7a02ab76dab85f7691ebd7725 https://github.com/galaxyproject/galaxy/commit/2073114b68937ab7a02ab76dab85f... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M config/plugins/visualizations/charts/static/charts/jqplot/bar/config.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/jqplot/line/config.js M config/plugins/visualizations/charts/static/charts/jqplot/scatter/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/line/config.js M config/plugins/visualizations/charts/static/charts/nvd3/line_focus/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/nvd3/scatter/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-plugin.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-datasets.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-utilities.js M config/plugins/visualizations/charts/static/views/editor.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M static/maps/mvc/form/form-data.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js

Log Message: ----------- Generalize group forms

Commit: 29b54a230d949cf944ba280934318346db453961 https://github.com/galaxyproject/galaxy/commit/29b54a230d949cf944ba280934318... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities/tabular-jobs.js

Log Message: ----------- Fix job submission

Commit: 45a40186b77877980570a4b9e73e404372db564a https://github.com/galaxyproject/galaxy/commit/45a40186b77877980570a4b9e73e4... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/editor.js M config/plugins/visualizations/charts/static/views/groups.js

Log Message: ----------- Fix validation message for missing data columns

Commit: 756f1a03df40775649e619f439bfff0c93016a7c https://github.com/galaxyproject/galaxy/commit/756f1a03df40775649e619f439bff... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-plugin.js

Log Message: ----------- Fix heatmap plugin

Commit: d0efd5f797d37f49b7c028a48a7b514a7dd84947 https://github.com/galaxyproject/galaxy/commit/d0efd5f797d37f49b7c028a48a7b5... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities/tabular-datasets.js

Log Message: ----------- Remove dataset limit

Commit: 3e00f7a559d5a7e3d7ca19d72c6d2e431f2c3502 https://github.com/galaxyproject/galaxy/commit/3e00f7a559d5a7e3d7ca19d72c6d2... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.js A config/plugins/visualizations/charts/static/components/model.js A config/plugins/visualizations/charts/static/components/screenshot.js A config/plugins/visualizations/charts/static/components/storage.js R config/plugins/visualizations/charts/static/library/screenshot.js R config/plugins/visualizations/charts/static/library/storage.js R config/plugins/visualizations/charts/static/models/chart.js R config/plugins/visualizations/charts/static/models/config.js M config/plugins/visualizations/charts/static/views/editor.js M config/plugins/visualizations/charts/static/views/viewer.js

Log Message: ----------- Remove unused config

Commit: fdad129cbdb904aa599a3060d5642aefba780877 https://github.com/galaxyproject/galaxy/commit/fdad129cbdb904aa599a3060d5642... Author: guerler aysam.guerler@gmail.com Date: 2016-08-21 (Sun, 21 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/utilities/tabular-datasets.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-jobs.js M config/plugins/visualizations/charts/static/views/types.js M config/plugins/visualizations/charts/templates/charts.mako

Log Message: ----------- Remove global config dictionary, use Galaxy instead

Commit: 9228213b989c7ae53c3f02e26f299eedfe4e61d3 https://github.com/galaxyproject/galaxy/commit/9228213b989c7ae53c3f02e26f299... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js R config/plugins/visualizations/charts/static/charts/utilities/tabular-jobs.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-utilities.js A config/plugins/visualizations/charts/static/components/jobs.js

Log Message: ----------- Allow to execute any tool

Commit: ebab021d3c7077e3b333b634521b45d6ad1ecedc https://github.com/galaxyproject/galaxy/commit/ebab021d3c7077e3b333b634521b4... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/components/jobs.js

Log Message: ----------- Fix error message

Commit: cab8f4c44f31ca9e8be984742a6961ce942bffea https://github.com/galaxyproject/galaxy/commit/cab8f4c44f31ca9e8be984742a696... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-plugin.js

Log Message: ----------- Make heatmap title font smaller

Commit: 7325991e1569ac76559c7ca32e86ae073a4ff679 https://github.com/galaxyproject/galaxy/commit/7325991e1569ac76559c7ca32e86a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/viewer.js

Log Message: ----------- Add space between viewport top and portlet header

Commit: 76d886ee97bfbd9e887eb68fdef8919dcc310723 https://github.com/galaxyproject/galaxy/commit/76d886ee97bfbd9e887eb68fdef89... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.css M config/plugins/visualizations/charts/static/app.js M config/plugins/visualizations/charts/static/views/viewer.js

Log Message: ----------- Fix message style, align view names

Commit: 94d6d6f16fde5c2b5922cb3bd6d61a7a96636ec2 https://github.com/galaxyproject/galaxy/commit/94d6d6f16fde5c2b5922cb3bd6d61... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/ui/ui-tabs.js A config/plugins/visualizations/charts/static/charts/others/example/config.js A config/plugins/visualizations/charts/static/charts/others/example/logo.png A config/plugins/visualizations/charts/static/charts/others/example/wrapper.js M config/plugins/visualizations/charts/static/charts/types.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M config/plugins/visualizations/charts/static/views/viewport.js M static/maps/mvc/ui/ui-tabs.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/ui/ui-tabs.js

Log Message: ----------- Add developer example

Commit: 5848a6202a1f9647ef6e54b7af656536e68ada3f https://github.com/galaxyproject/galaxy/commit/5848a6202a1f9647ef6e54b7af656... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/example/config.js

Log Message: ----------- Fix example data labels

Commit: afce76516c42e0cd549c7108d91c8190a512c263 https://github.com/galaxyproject/galaxy/commit/afce76516c42e0cd549c7108d91c8... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/example/config.js

Log Message: ----------- Add multi-panel option to developer example

Commit: 50dfd162c189f096a92b4e48f31ad5cdb80eac0c https://github.com/galaxyproject/galaxy/commit/50dfd162c189f096a92b4e48f31ad... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-inputs.js

Log Message: ----------- Use build in boolean input type instead of custom select definition

Commit: 84e922c274713e07d14fd7ed991cb64a70a473d6 https://github.com/galaxyproject/galaxy/commit/84e922c274713e07d14fd7ed991cb... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/groups.js

Log Message: ----------- Fix group refresh handling

Commit: fbd81551a0f1bda6a388c0d03728058167a3650f https://github.com/galaxyproject/galaxy/commit/fbd81551a0f1bda6a388c0d037280... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.css M config/plugins/visualizations/charts/static/app.js M config/plugins/visualizations/charts/static/charts/others/example/config.js M config/plugins/visualizations/charts/static/charts/others/example/logo.png M config/plugins/visualizations/charts/static/components/model.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M config/plugins/visualizations/charts/static/views/types.js M config/plugins/visualizations/charts/static/views/viewport.js

Log Message: ----------- Display currently selected chart type details in settings and groups

Commit: a1a264f79b2d84e7bffa3cf769e4cbdd24cd7e13 https://github.com/galaxyproject/galaxy/commit/a1a264f79b2d84e7bffa3cf769e4c... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.css

Log Message: ----------- Break long chart type descriptions

Commit: 4efc4d2eed8c5aa7c2f61df99a08ec256cda763c https://github.com/galaxyproject/galaxy/commit/4efc4d2eed8c5aa7c2f61df99a08e... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.css

Log Message: ----------- Fix description styles

Commit: 54be4b874c59ce90daa0025fd236a26140fa82df https://github.com/galaxyproject/galaxy/commit/54be4b874c59ce90daa0025fd236a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/groups.js

Log Message: ----------- Remove unnecessary check

Commit: f4510a089dff871583d8b3fab5aaa91fffd23dea https://github.com/galaxyproject/galaxy/commit/f4510a089dff871583d8b3fab5aaa... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: A config/plugins/visualizations/charts/static/views/description.js

Log Message: ----------- Add description view

Commit: c2a0bc550940e73485738c78a253fcda94c34da9 https://github.com/galaxyproject/galaxy/commit/c2a0bc550940e73485738c78a253f... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/description.js

Log Message: ----------- Fix description change listener

Commit: 8996b0a963abbcd1bd4ec3a2797b5ab9fe6f71e7 https://github.com/galaxyproject/galaxy/commit/8996b0a963abbcd1bd4ec3a2797b5... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/settings.js

Log Message: ----------- Fix chart settings mapping and initialization

Commit: e35520c13a91eb979abab524db0e5da829ffc4d4 https://github.com/galaxyproject/galaxy/commit/e35520c13a91eb979abab524db0e5... Author: guerler aysam.guerler@gmail.com Date: 2016-08-22 (Mon, 22 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js

Log Message: ----------- Fix heatmap configuration

Commit: d9b8a1674b3ba05e9076fdc85c494fbe1b2a736a https://github.com/galaxyproject/galaxy/commit/d9b8a1674b3ba05e9076fdc85c494... Author: guerler aysam.guerler@gmail.com Date: 2016-08-23 (Tue, 23 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/ui/ui-tabs.js M config/plugins/visualizations/charts/static/app.css M config/plugins/visualizations/charts/static/app.js M config/plugins/visualizations/charts/static/charts/types.js M config/plugins/visualizations/charts/static/components/storage.js M config/plugins/visualizations/charts/static/views/editor.js M config/plugins/visualizations/charts/static/views/types.js M static/maps/mvc/ui/ui-tabs.js.map M static/scripts/mvc/ui/ui-tabs.js

Log Message: ----------- Use tabs for chart type selector

Commit: d921470fbd8217552e97b423c7f9104a537bd05c https://github.com/galaxyproject/galaxy/commit/d921470fbd8217552e97b423c7f91... Author: guerler aysam.guerler@gmail.com Date: 2016-08-23 (Tue, 23 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/app.css M config/plugins/visualizations/charts/static/views/types.js

Log Message: ----------- Fix spacing

Commit: cece0b48edf8baff411d8667d2e7379335e7868a https://github.com/galaxyproject/galaxy/commit/cece0b48edf8baff411d8667d2e73... Author: guerler aysam.guerler@gmail.com Date: 2016-08-23 (Tue, 23 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/views/types.js

Log Message: ----------- Remove unused library radio buttons

Commit: a31640c7306a1d1de1187dd6c0df99805976ac3d https://github.com/galaxyproject/galaxy/commit/a31640c7306a1d1de1187dd6c0df9... Author: guerler aysam.guerler@gmail.com Date: 2016-08-24 (Wed, 24 Aug 2016)

Changed paths: M .ci/flake8_lint_include_list.txt M client/galaxy/scripts/mvc/dataset/data.js M config/galaxy.ini.sample M config/reports.ini.sample M config/tool_shed.ini.sample M lib/galaxy/auth/providers/ldap_ad.py M lib/galaxy/config.py M lib/galaxy/jobs/__init__.py M lib/galaxy/security/validate_user_input.py M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/conda_util.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/galaxy/util/postfork.py M lib/galaxy/web/framework/base.py A lib/galaxy/web/framework/middleware/batch.py M lib/galaxy/web/proxy/__init__.py M lib/galaxy/web/proxy/js/lib/main.js M lib/galaxy/web/proxy/js/lib/proxy.js M lib/galaxy/web/proxy/js/package.json M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/tool_shed/config.py M static/maps/mvc/dataset/data.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/dataset/data.js A test/api/test_api_batch.py A test/casperjs/api-batch-tests.js

Log Message: ----------- Merge branch 'dev' into charts_revision

Commit: 942c59bca4118e55df34743299f758fa3199f6fb https://github.com/galaxyproject/galaxy/commit/942c59bca4118e55df34743299f75... Author: guerler aysam.guerler@gmail.com Date: 2016-08-24 (Wed, 24 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/utilities/tabular-form.js

Log Message: ----------- Fix data labels

Commit: 68a3cb4f4326fcc5adb10d1d4a14aadde675e588 https://github.com/galaxyproject/galaxy/commit/68a3cb4f4326fcc5adb10d1d4a14a... Author: guerler aysam.guerler@gmail.com Date: 2016-08-24 (Wed, 24 Aug 2016)

Changed paths: M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js

Log Message: ----------- Fix pie chart config

Commit: 75a3aecbbeddf7124ab9e6d7b885bdd28765e0e0 https://github.com/galaxyproject/galaxy/commit/75a3aecbbeddf7124ab9e6d7b885b... Author: John Chilton jmchilton@gmail.com Date: 2016-08-25 (Thu, 25 Aug 2016)

Changed paths: M client/galaxy/scripts/mvc/form/form-data.js M client/galaxy/scripts/mvc/form/form-view.js M client/galaxy/scripts/mvc/ui/ui-color-picker.js M client/galaxy/scripts/mvc/ui/ui-tabs.js M client/galaxy/scripts/utils/utils.js M config/plugins/visualizations/charts/static/app.css M config/plugins/visualizations/charts/static/app.js R config/plugins/visualizations/charts/static/charts/forms/default.js M config/plugins/visualizations/charts/static/charts/jqplot/bar/config.js M config/plugins/visualizations/charts/static/charts/jqplot/bar/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/config.js M config/plugins/visualizations/charts/static/charts/jqplot/boxplot/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/common/config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/plot-config.js M config/plugins/visualizations/charts/static/charts/jqplot/common/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/jqplot/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/line/config.js M config/plugins/visualizations/charts/static/charts/jqplot/line/wrapper.js M config/plugins/visualizations/charts/static/charts/jqplot/scatter/config.js M config/plugins/visualizations/charts/static/charts/jqplot/scatter/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_horizontal_stacked/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/config.js M config/plugins/visualizations/charts/static/charts/nvd3/bar_stacked/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/common/config.js M config/plugins/visualizations/charts/static/charts/nvd3/common/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/config.js M config/plugins/visualizations/charts/static/charts/nvd3/histogram_discrete/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/line/config.js M config/plugins/visualizations/charts/static/charts/nvd3/line/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/line_focus/config.js M config/plugins/visualizations/charts/static/charts/nvd3/line_focus/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/config.js M config/plugins/visualizations/charts/static/charts/nvd3/pie/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/scatter/config.js M config/plugins/visualizations/charts/static/charts/nvd3/scatter/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_full/wrapper.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/config.js M config/plugins/visualizations/charts/static/charts/nvd3/stackedarea_stream/wrapper.js A config/plugins/visualizations/charts/static/charts/others/example/config.js A config/plugins/visualizations/charts/static/charts/others/example/logo.png A config/plugins/visualizations/charts/static/charts/others/example/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-parameters.js M config/plugins/visualizations/charts/static/charts/others/heatmap/heatmap-plugin.js M config/plugins/visualizations/charts/static/charts/others/heatmap/wrapper.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/config.js M config/plugins/visualizations/charts/static/charts/others/heatmap_cluster/wrapper.js A config/plugins/visualizations/charts/static/charts/overview.js R config/plugins/visualizations/charts/static/charts/tools.js M config/plugins/visualizations/charts/static/charts/types.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-datasets.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-form.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-inputs.js A config/plugins/visualizations/charts/static/charts/utilities/tabular-utilities.js A config/plugins/visualizations/charts/static/components/jobs.js A config/plugins/visualizations/charts/static/components/model.js A config/plugins/visualizations/charts/static/components/screenshot.js A config/plugins/visualizations/charts/static/components/storage.js R config/plugins/visualizations/charts/static/library/datasets.js R config/plugins/visualizations/charts/static/library/jobs.js R config/plugins/visualizations/charts/static/library/screenshot.js R config/plugins/visualizations/charts/static/library/storage.js R config/plugins/visualizations/charts/static/models/chart.js R config/plugins/visualizations/charts/static/models/config.js A config/plugins/visualizations/charts/static/views/description.js M config/plugins/visualizations/charts/static/views/editor.js M config/plugins/visualizations/charts/static/views/groups.js M config/plugins/visualizations/charts/static/views/settings.js M config/plugins/visualizations/charts/static/views/types.js M config/plugins/visualizations/charts/static/views/viewer.js M config/plugins/visualizations/charts/static/views/viewport.js M config/plugins/visualizations/charts/templates/charts.mako M static/maps/mvc/form/form-data.js.map M static/maps/mvc/form/form-view.js.map M static/maps/mvc/ui/ui-color-picker.js.map M static/maps/mvc/ui/ui-tabs.js.map M static/maps/utils/utils.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/mvc/form/form-data.js M static/scripts/mvc/form/form-view.js M static/scripts/mvc/ui/ui-tabs.js M static/scripts/utils/utils.js

Log Message: ----------- Merge pull request #2820 from guerler/charts_revision

Charts revision, part 2

Compare: https://github.com/galaxyproject/galaxy/compare/d3c696f84671...75a3aecbbedd