[galaxyproject/galaxy] 70a64b: Refactor bug reporting into plugins
Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 70a64b304eb2b5c9642581061f345e669251eac6 https://github.com/galaxyproject/galaxy/commit/70a64b304eb2b5c9642581061f345... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: A config/error_report.xml.sample M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/jobs/__init__.py A lib/galaxy/tools/error_reports/__init__.py A lib/galaxy/tools/error_reports/sinks/__init__.py A lib/galaxy/tools/error_reports/sinks/email.py A lib/galaxy/tools/error_reports/sinks/json.py A lib/galaxy/tools/error_reports/sinks/sentry.py M lib/galaxy/web/framework/webapp.py M lib/galaxy/webapps/galaxy/controllers/dataset.py A templates/messages.mako Log Message: ----------- Refactor bug reporting into plugins Commit: 9dd27dcc3de5eff03c4a37c34fc810d3f295c85c https://github.com/galaxyproject/galaxy/commit/9dd27dcc3de5eff03c4a37c34fc81... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/__init__.py M lib/galaxy/tools/error_reports/sinks/__init__.py M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- flake8 Commit: 181a72a6f383aa54c4a053cedba05e345eda2584 https://github.com/galaxyproject/galaxy/commit/181a72a6f383aa54c4a053cedba05... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/sinks/email.py M lib/galaxy/tools/error_reports/sinks/json.py M lib/galaxy/tools/error_reports/sinks/sentry.py Log Message: ----------- flake8 import Commit: 437ab325da8b49b9f0e9b796f8515899aa10d035 https://github.com/galaxyproject/galaxy/commit/437ab325da8b49b9f0e9b796f8515... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: A doc/source/admin/special_topics/bug_reports.rst M doc/source/admin/special_topics/index.rst Log Message: ----------- document Commit: 46b621708aa4b9973c3e6bf6b02417dc3931523c https://github.com/galaxyproject/galaxy/commit/46b621708aa4b9973c3e6bf6b0241... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M doc/source/admin/special_topics/bug_reports.rst M lib/galaxy/tools/error_reports/sinks/sentry.py Log Message: ----------- Allow sentry to be verbose Commit: d7e400c96ddf51caca3df26e8dc8a75089be2b06 https://github.com/galaxyproject/galaxy/commit/d7e400c96ddf51caca3df26e8dc8a... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: R config/error_report.xml.sample A config/error_report.yml.sample M lib/galaxy/config.py Log Message: ----------- Per @jmchilton comment, rewrite as yml Commit: f4a823c27a9b533994c593670cf5a13740e5bf7a https://github.com/galaxyproject/galaxy/commit/f4a823c27a9b533994c593670cf5a... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js Log Message: ----------- add bug reporter Commit: ed7551e09679b940bd084fd5e5ce5fcf97320ffa https://github.com/galaxyproject/galaxy/commit/ed7551e09679b940bd084fd5e5ce5... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: A client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js A client/galaxy/scripts/mvc/job/job-params.js Log Message: ----------- redirect to new url Commit: 2f8347d5bc4bdf52a7d2b10d3e69b55290d104ca https://github.com/galaxyproject/galaxy/commit/2f8347d5bc4bdf52a7d2b10d3e69b... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/webapps/galaxy/buildapp.py Log Message: ----------- add clientside route Commit: ef6b8cbeea5a0578683df8f013a0739a1e022fe0 https://github.com/galaxyproject/galaxy/commit/ef6b8cbeea5a0578683df8f013a07... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/style/less/galaxy_bootstrap/overrides.less M templates/show_params.mako Log Message: ----------- move css rule to a more generic location Commit: 98ac18661865e958249f9a21bc847ba558b00893 https://github.com/galaxyproject/galaxy/commit/98ac18661865e958249f9a21bc847... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/sinks/email.py M lib/galaxy/tools/error_reports/sinks/json.py M lib/galaxy/tools/error_reports/sinks/sentry.py Log Message: ----------- change report code Commit: 6f8f38170c976b2152ef2e21fc46a47922da4b56 https://github.com/galaxyproject/galaxy/commit/6f8f38170c976b2152ef2e21fc46a... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/dataset.py Log Message: ----------- refactor into an API Commit: 838b23358e6d00ce2d65f6a5fde6a413505eaf10 https://github.com/galaxyproject/galaxy/commit/838b23358e6d00ce2d65f6a5fde6a... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js Log Message: ----------- Handle error report submission Commit: 64174113bfd8e18b2e87581137a134f8f4520bd7 https://github.com/galaxyproject/galaxy/commit/64174113bfd8e18b2e87581137a13... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js Log Message: ----------- refactor a bit Commit: 73369a2e8dd098d59083c61f67ec140a7c3cd102 https://github.com/galaxyproject/galaxy/commit/73369a2e8dd098d59083c61f67ec1... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-error.js Log Message: ----------- Add extra parameter to allow multiple messages Commit: cdb82dd8e64b83e14244b3b46163be1715afcfe2 https://github.com/galaxyproject/galaxy/commit/cdb82dd8e64b83e14244b3b46163b... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/__init__.py M lib/galaxy/webapps/galaxy/api/jobs.py Log Message: ----------- Change invocation to pass user information Commit: 5980bd91bb0f916b576b27386d2b052609610d57 https://github.com/galaxyproject/galaxy/commit/5980bd91bb0f916b576b27386d2b0... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/errors.py Log Message: ----------- Link in expected places Commit: fd6c247398133d6f8df26b447328ec64801fcd11 https://github.com/galaxyproject/galaxy/commit/fd6c247398133d6f8df26b447328e... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: A lib/galaxy/tools/error_reports/sinks/biostars.py M lib/galaxy/util/biostar.py Log Message: ----------- Switch biostars to using HTML submission Commit: fb78a2118d0e45a11378bbc5e0daf0e351c8b763 https://github.com/galaxyproject/galaxy/commit/fb78a2118d0e45a11378bbc5e0daf... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M static/maps/mvc/dataset/dataset-li-edit.js.map M static/scripts/mvc/dataset/dataset-li-edit.js M static/style/blue/base.css Log Message: ----------- merge Commit: e8a5b48da9ce98c72ac92171be56435ca2b9565f https://github.com/galaxyproject/galaxy/commit/e8a5b48da9ce98c72ac92171be564... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: R templates/webapps/galaxy/dataset/errors.mako Log Message: ----------- Now unused Commit: 550cb7dfae8706e06a2b7638b078c9b9b134281d https://github.com/galaxyproject/galaxy/commit/550cb7dfae8706e06a2b7638b078c... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/config.py M lib/galaxy/tools/error_reports/__init__.py A lib/galaxy/tools/error_reports/plugins/__init__.py A lib/galaxy/tools/error_reports/plugins/biostars.py A lib/galaxy/tools/error_reports/plugins/email.py A lib/galaxy/tools/error_reports/plugins/json.py A lib/galaxy/tools/error_reports/plugins/sentry.py R lib/galaxy/tools/error_reports/sinks/__init__.py R lib/galaxy/tools/error_reports/sinks/biostars.py R lib/galaxy/tools/error_reports/sinks/email.py R lib/galaxy/tools/error_reports/sinks/json.py R lib/galaxy/tools/error_reports/sinks/sentry.py Log Message: ----------- Requested renames, sink + yml Commit: fcd94f0483c119a4db0e84e469af3aade0f2847c https://github.com/galaxyproject/galaxy/commit/fcd94f0483c119a4db0e84e469af3... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M config/error_report.yml.sample M lib/galaxy/app.py M lib/galaxy/jobs/__init__.py M lib/galaxy/tools/error_reports/__init__.py M lib/galaxy/webapps/galaxy/api/jobs.py Log Message: ----------- more renames Commit: 7c1c60d82643b100a55edefb6f88d13671defafa https://github.com/galaxyproject/galaxy/commit/7c1c60d82643b100a55edefb6f88d... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: A static/maps/mvc/dataset/dataset-error.js.map A static/maps/mvc/job/job-params.js.map A static/scripts/mvc/dataset/dataset-error.js A static/scripts/mvc/job/job-params.js Log Message: ----------- forgot static files Commit: 61a5b7c9e139cfa73fefa048f6ec34a7511b741c https://github.com/galaxyproject/galaxy/commit/61a5b7c9e139cfa73fefa048f6ec3... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M static/maps/mvc/dataset/dataset-li-edit.js.map M static/scripts/mvc/dataset/dataset-li-edit.js Log Message: ----------- another merge Commit: a6aedc695336b122c5e552ced771a97b5f62ee52 https://github.com/galaxyproject/galaxy/commit/a6aedc695336b122c5e552ced771a... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/plugins/biostars.py Log Message: ----------- address flaking Commit: 1e9c31241c419cb53306232856ed7c368d8c6e92 https://github.com/galaxyproject/galaxy/commit/1e9c31241c419cb53306232856ed7... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/jobs.py Log Message: ----------- remove comment Commit: 538ef006f36b3e525bb87d18944d596afb5f1639 https://github.com/galaxyproject/galaxy/commit/538ef006f36b3e525bb87d18944d5... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/util/plugin_config.py Log Message: ----------- Also load yaml sample files. cc @jmchilton, is this ok? Commit: 3e8919c41643352feb6df50d04a71f2291024ef7 https://github.com/galaxyproject/galaxy/commit/3e8919c41643352feb6df50d04a71... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M config/error_report.yml.sample Log Message: ----------- correct name to type Commit: 5563ecc3ffa7d0565be42eea99276d64ec5232dd https://github.com/galaxyproject/galaxy/commit/5563ecc3ffa7d0565be42eea99276... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/plugins/biostars.py Log Message: ----------- fix import order Commit: 00ee109ed4538b6a032489a07807deb7e13c9882 https://github.com/galaxyproject/galaxy/commit/00ee109ed4538b6a032489a07807d... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/plugins/email.py Log Message: ----------- fix css class Commit: 4c36b5a7a189f9586c061460bfdec7a84b6774c4 https://github.com/galaxyproject/galaxy/commit/4c36b5a7a189f9586c061460bfdec... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/tools/error_reports/plugins/sentry.py Log Message: ----------- not a useful test in this location Commit: a2b02065ebbfa9759aad5e56db0c251f7ad514bc https://github.com/galaxyproject/galaxy/commit/a2b02065ebbfa9759aad5e56db0c2... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M lib/galaxy/web/framework/webapp.py R templates/messages.mako Log Message: ----------- Remove unneeded messages.mako. Commit: 41461235b2429ef84c50336021d9921ca6ef8a4a https://github.com/galaxyproject/galaxy/commit/41461235b2429ef84c50336021d99... Author: E Rasche <hxr@hx42.org> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map Log Message: ----------- rebuild client Commit: 6d7d4e9e8e55cfcaa504f43e6288c1d39c0ed932 https://github.com/galaxyproject/galaxy/commit/6d7d4e9e8e55cfcaa504f43e6288c... Author: John Chilton <jmchilton@gmail.com> Date: 2017-08-10 (Thu, 10 Aug 2017) Changed paths: M client/galaxy/scripts/apps/analysis.js A client/galaxy/scripts/mvc/dataset/dataset-error.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js A client/galaxy/scripts/mvc/job/job-params.js M client/galaxy/style/less/galaxy_bootstrap/overrides.less A config/error_report.yml.sample A doc/source/admin/special_topics/bug_reports.rst M doc/source/admin/special_topics/index.rst M lib/galaxy/app.py M lib/galaxy/config.py M lib/galaxy/jobs/__init__.py A lib/galaxy/tools/error_reports/__init__.py A lib/galaxy/tools/error_reports/plugins/__init__.py A lib/galaxy/tools/error_reports/plugins/biostars.py A lib/galaxy/tools/error_reports/plugins/email.py A lib/galaxy/tools/error_reports/plugins/json.py A lib/galaxy/tools/error_reports/plugins/sentry.py M lib/galaxy/tools/errors.py M lib/galaxy/util/biostar.py M lib/galaxy/util/plugin_config.py M lib/galaxy/webapps/galaxy/api/jobs.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/dataset.py A static/maps/mvc/dataset/dataset-error.js.map M static/maps/mvc/dataset/dataset-li-edit.js.map A static/maps/mvc/job/job-params.js.map M static/scripts/bundled/admin.bundled.js M static/scripts/bundled/admin.bundled.js.map M static/scripts/bundled/analysis.bundled.js M static/scripts/bundled/analysis.bundled.js.map M static/scripts/bundled/libs.bundled.js M static/scripts/bundled/libs.bundled.js.map M static/scripts/bundled/login.bundled.js.map A static/scripts/mvc/dataset/dataset-error.js M static/scripts/mvc/dataset/dataset-li-edit.js A static/scripts/mvc/job/job-params.js M static/style/blue/base.css M templates/show_params.mako R templates/webapps/galaxy/dataset/errors.mako Log Message: ----------- Merge pull request #4305 from erasche/bug-report-actions Refactor bug reporting into plugins / Remove bug report mako Compare: https://github.com/galaxyproject/galaxy/compare/5e43fcef3c94...6d7d4e9e8e55
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