# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User jeremy goecks jeremy.goecks@emory.edu # Date 1283291669 14400 # Node ID 03d06d05bf62a6444f1a652910708fde17fa189b # Parent c472ac58348b0cd6d7e2040e4c5b2bfb4f42724e Slight makeover to Galaxy tabs: (a) added published item links to 'Data Libraries' tab; (b) standardized personal item lists as 'Saved XXXs'; and (c) added defaults action for Visualization tab. Also extended tab generator function to handle the generation of all menu items and types.

--- a/templates/workflow/list_published.mako +++ b/templates/workflow/list_published.mako @@ -4,7 +4,7 @@ <% self.has_left_panel=False self.has_right_panel=False - self.active_view="page" + self.active_view="" self.message_box_visible=False %></%def> @@ -24,8 +24,6 @@

<%def name="center_panel()">

- ## <iframe name="galaxy_main" id="galaxy_main" frameborder="0" style="position: absolute; width: 100%; height: 100%;" src="${h.url_for( controller="page", action="list" )}"></iframe> - <div style="overflow: auto; height: 100%;"><div class="page-container" style="padding: 10px;"> ${h.to_unicode( grid )}

--- a/templates/webapps/galaxy/base_panels.mako +++ b/templates/webapps/galaxy/base_panels.mako @@ -12,7 +12,10 @@ <table class="tab-group" border="0" cellspacing="0" style="margin: auto;"><tr>

- <%def name="tab( id, display, href, target='_parent', visible=True, extra_class='' )"> + <%def name="tab( id, display, href, target='_parent', visible=True, extra_class='', menu_options=None )"> + ## Create a tab at the top of the panels. menu_options is a list of 2-elements lists of [name, link] + ## that are options in the menu. + <% cls = "tab" if extra_class: @@ -23,120 +26,127 @@ if not visible: style = "display: none;" %> - <td class="${cls}" style="${style}"><a target="${target}" href="${href}">${display}</a></td> + <td class="${cls}" style="${style}"><a target="${target}" href="${href}">${display}</a> + %if menu_options: + <div class="submenu"> + <ul> + %for menu_item in menu_options: + <li> + %if not menu_item: + <hr style="color: inherit; background-color: gray"/></li> + %else: + %if len ( menu_item ) == 1: + ${menu_item[0]} + %elif len ( menu_item ) == 2: + <% name, link = menu_item %> + <a href="${link}">${name}</a></li> + %else: + <% name, link, target = menu_item %> + <a target="${target}" href="${link}">${name}</a></li> + %endif + %endif + %endfor + </ul> + </div> + %endif + </td></%def>

- %if app.config.cloud_controller_instance: - ${tab( "cloud", "Cloud", h.url_for( controller='/cloud', action='index' ))} - %else: - ${tab( "analysis", "Analyze Data", h.url_for( controller='/root', action='index' ))} - - ${tab( "workflow", "Workflow", h.url_for( controller='/workflow', action='index' ))} - - ${tab( "libraries", "Data Libraries", h.url_for( controller='/library', action='index' ))} - %endif + + ## Analyze data tab. + ${tab( "analysis", "Analyze Data", h.url_for( controller='/root', action='index' ) )}

+ ## Workflow tab. + ${tab( "workflow", "Workflow", h.url_for( controller='/workflow', action='index' ) )} + + ## 'Shared Items' or Libraries tab. + <% + menu_options = [ + [ 'Data Libraries', h.url_for( controller='/library', action='index') ], + None, + [ 'Published Histories', h.url_for( controller='/history', action='list_published' ) ], + [ 'Published Workflows', h.url_for( controller='/workflow', action='list_published' ) ], + [ 'Published Visualizations', h.url_for( controller='/visualization', action='list_published' ) ], + [ 'Published Pages', h.url_for( controller='/page', action='list_published' ) ] + ] + tab( "libraries", "Data Libraries", h.url_for( controller='/library', action='index'), menu_options=menu_options ) + %> + + ## Lab menu. %if trans.user and trans.user.accessible_request_types(trans): - <td class="tab"> - <a>Lab</a> - <div class="submenu"> - <ul> - <li><a href="${h.url_for( controller='/requests', action='index' )}">Sequencing requests</a></li> - <li><a href="${h.url_for( controller='/requests_common', action='find', cntrller='requests' )}">Find samples</a></li> - <li><a target="_blank" href="${app.config.get( "lims_doc_url", "http://main.g2.bx.psu.edu/u/rkchak/p/sts" )}">Help</a></li> - </ul> - </div> - </td> + menu_options = [ + [ 'Sequencing Requests', h.url_for( controller='/requests', action='index' ) ], + [ 'Find Samples', h.url_for( controller='/requests_common', action='find' ) ], + [ 'Help', app.config.get( "lims_doc_url", "http://main.g2.bx.psu.edu/u/rkchak/p/sts" )}, "galaxy_main" ], + ] + tab( "lab", "Lab", None, menu_options=menu_options ) %endif

+ ## Visualization menu. %if app.config.get_bool( 'enable_tracks', False ): - <% - cls = "tab" - if self.active_view == 'visualization': - cls += " active" - %> - <td class="${cls}"> - Visualization - <div class="submenu"> - <ul> - <li><a href="${h.url_for( controller='/tracks', action='index' )}">New Track Browser</a></li> - <li><hr style="color: inherit; background-color: gray"/></li> - <li><a href="${h.url_for( controller='/visualization', action='list' )}">Saved Visualizations</a></li> - </ul> - </div> - </td> + <% + menu_options = [ + ['New Track Browser', h.url_for( controller='/tracks', action='index' ) ], + ['Saved Visualizations', h.url_for( controller='/visualization', action='list' ) ] + ] + tab( "visualization", "Visualization", h.url_for( controller='/visualization', action='list'), menu_options=menu_options ) + %> %endif

+ ## Admin tab. ${tab( "admin", "Admin", h.url_for( controller='/admin', action='index' ), extra_class="admin-only", visible=( trans.user and app.config.is_admin_user( trans.user ) ) )}

- <td class="tab"> - <a>Help</a> - <div class="submenu"> - <ul> - <li><a href="${app.config.get( "bugs_email", "mailto:galaxy-bugs@bx.psu.edu" )}">Email comments, bug reports, or suggestions</a></li> - <li><a target="_blank" href="${app.config.get( "wiki_url", "http://bitbucket.org/galaxy/galaxy-central/wiki" )}">Galaxy Wiki</a></li> - <li><a target="_blank" href="${app.config.get( "screencasts_url", "http://galaxycast.org" )}">Video tutorials (screencasts)</a></li> - <li><a target="_blank" href="${app.config.get( "citation_url", "http://bitbucket.org/galaxy/galaxy-central/wiki/Citations" )}">How to Cite Galaxy</a></li> - </ul> - </div> - </td> + ## Help tab. + <% + menu_options = [ + ['Email comments, bug reports, or suggestions', app.config.get( "bugs_email", "mailto:galaxy-bugs@bx.psu.edu" ) ], + ['Galaxy Wiki', app.config.get( "wiki_url", "http://bitbucket.org/galaxy/galaxy-central/wiki" ), "_blank" ], + ['Video tutorials (screencasts)', app.config.get( "screencasts_url", "http://galaxycast.org" ), "_blank" ], + ['How to Cite Galaxy', app.config.get( "screencasts_url", "http://bitbucket.org/galaxy/galaxy-central/wiki/Citations" ), "_blank" ] + ] + tab( "help", "Help", None, menu_options=menu_options) + %>

- ## User tab. - <% - cls = "tab" - if self.active_view == 'user': - cls += " active" + ## User tabs. + <% + # Menu for user who is not logged in. + menu_options = [ [ "Login", h.url_for( controller='/user', action='login' ), "galaxy_main" ] ] + if app.config.allow_user_creation: + menu_options.append( [ "Register", h.url_for( controller='/user', action='create' ), "galaxy_main" ] ) + extra_class = "loggedout-only" + visible = ( trans.user == None ) + tab( "user", "User", None, visible=visible, menu_options=menu_options ) + + # Menu for user who is logged in. + if trans.user: + email = trans.user.email + else: + email = "" + menu_options = [ [ '<li>Logged in as <span id="user-email">%s</span></li>' % email ] ] + if app.config.use_remote_user: + if app.config.remote_user_logout_href: + menu_options.append( [ 'Logout', app.config.remote_user_logout_href, "galaxy_main" ] ) + else: + menu_options.append( [ 'Preferences', h.url_for( controller='/user', action='index' ), "galaxy_main" ] ) + if app.config.get_bool( 'enable_tracks', False ): + menu_options.append( [ 'Custom Builds', h.url_for( controller='/user', action='dbkeys' ), "galaxy_main" ] ) + if app.config.require_login: + logout_url = h.url_for( controller='/root', action='index', m_c='user', m_a='logout' ) + else: + logout_url = h.url_for( controller='/user', action='logout' ) + menu_options.append( [ 'Logout', logout_url, "_top" ] ) + menu_options.append( None ) + menu_options.append( [ 'Saved Histories', h.url_for( controller='/history', action='list' ), "galaxy_main" ] ) + menu_options.append( [ 'Saved Datasets', h.url_for( controller='/dataset', action='list' ), "galaxy_main" ] ) + if app.config.get_bool( 'enable_pages', False ): + menu_options.append( [ 'Saved Pages', h.url_for( controller='/page', action='list' ), "_top" ] ) + if app.config.enable_api: + menu_options.append( [ 'API Keys', h.url_for( controller='/user', action='api_keys' ), "galaxy_main" ] ) + + extra_class = "loggedin-only" + visible = ( trans.user != None ) + tab( "user", "User", None, visible=visible, menu_options=menu_options ) %> - <td class="${cls}"> - <a>User</a> - <% - if trans.user: - user_email = trans.user.email - style1 = "display: none;" - style2 = ""; - else: - user_email = "" - style1 = "" - style2 = "display: none;" - %> - <div class="submenu"> - <ul class="loggedout-only" style="${style1}"> - <li><a target="galaxy_main" href="${h.url_for( controller='/user', action='login' )}">Login</a></li> - %if app.config.allow_user_creation: - <li><a target="galaxy_main" href="${h.url_for( controller='/user', action='create' )}">Register</a></li> - %endif - </ul> - <ul class="loggedin-only" style="${style2}"> - <li>Logged in as <span id="user-email">${user_email}</span></li> - %if app.config.use_remote_user: - %if app.config.remote_user_logout_href: - <li><a target="galaxy_main" href="${app.config.remote_user_logout_href}">Logout</a></li> - %endif - %else: - <li><a target="galaxy_main" href="${h.url_for( controller='/user', action='index' )}">Preferences</a></li> - <% - if app.config.require_login: - logout_url = h.url_for( controller='/root', action='index', m_c='user', m_a='logout' ) - else: - logout_url = h.url_for( controller='/user', action='logout' ) - %> - %if app.config.get_bool( 'enable_tracks', False ): - <li><a target="galaxy_main" href="${h.url_for( controller='/user', action='dbkeys' )}">Custom Builds</a></li> - %endif - <li><a target="_top" href="${logout_url}">Logout</a></li> - <li><hr style="color: inherit; background-color: gray"/></li> - %endif - <li><a target="galaxy_main" href="${h.url_for( controller='/history', action='list' )}">Histories</a></li> - <li><a target="galaxy_main" href="${h.url_for( controller='/dataset', action='list' )}">Datasets</a></li> - %if app.config.get_bool( 'enable_pages', False ): - <li><a href="${h.url_for( controller='/page', action='list' )}">Pages</a></li> - %endif - %if app.config.enable_api: - <li><a target="galaxy_main" href="${h.url_for( controller='/user', action='api_keys' )}">API Keys</a></li> - %endif - </ul> - </div> - </td></tr></table>