Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 23762f48a3385ffbf08112eb95739672a4656db7 https://github.com/galaxyproject/galaxy/commit/23762f48a3385ffbf08112eb95739... Author: John Chilton jmchilton@gmail.com Date: 2018-05-01 (Tue, 01 May 2018)

Changed paths: M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh

Log Message: ----------- Docker fixes - release 18.05 edition.

- Rev to new container with 18.05 dependencies pre-installed. - Enable caching of Yarn stuffs to enable - Redo fix for git not working in node container - was mounting /etc/passwd but that wasn't compat. with Mac OS X, setting these environment variables are. - Rearrange startup script a bit to make it load faster (wait for Selenium right before the tests not before waiting for DB). - Fix random error in logs related to Selenium trying to read something in /root by passing -H to set the Selenium user's home directory.

Commit: b84de1e82b36ae94be33ca4bf6e85e4c3ed748d2 https://github.com/galaxyproject/galaxy/commit/b84de1e82b36ae94be33ca4bf6e85... Author: John Chilton jmchilton@gmail.com Date: 2018-05-02 (Wed, 02 May 2018)

Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue

Log Message: ----------- Remove on-focus tooltips from rule builder.

Commit: db8d7e65fedab9795cf41ef6b498358180c727dc https://github.com/galaxyproject/galaxy/commit/db8d7e65fedab9795cf41ef6b4983... Author: John Chilton jmchilton@gmail.com Date: 2018-05-02 (Wed, 02 May 2018)

Changed paths: M client/galaxy/scripts/mvc/rules/rule-definitions.js

Log Message: ----------- Fix #6038.

Commit: cb38b2495d9e42ee3e0e8acc13fc60214334c75f https://github.com/galaxyproject/galaxy/commit/cb38b2495d9e42ee3e0e8acc13fc6... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-02 (Wed, 02 May 2018)

Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js

Log Message: ----------- Merge pull request #6040 from jmchilton/remove_focus_tooltip

[18.05] Two more rule builder fixes.

Commit: b8e5893b0d4efee3d2b256bf08b95906a2fd370e https://github.com/galaxyproject/galaxy/commit/b8e5893b0d4efee3d2b256bf08b95... Author: John Chilton jmchilton@gmail.com Date: 2018-05-02 (Wed, 02 May 2018)

Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue

Log Message: ----------- Fix for building doubly nested collections.

The late addition of validation code added for identifier uniqueness checking broke this I think.

Commit: 618de018b9507a58945c318a4ac49447ff30023b https://github.com/galaxyproject/galaxy/commit/618de018b9507a58945c318a4ac49... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-02 (Wed, 02 May 2018)

Changed paths: M .ci/jenkins/selenium/run_tests.sh M run_tests.sh M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh

Log Message: ----------- Merge pull request #6029 from jmchilton/release_18.05_broken_tests

[18.05] Docker fixes - release 18.05 edition.

Commit: e11da5fba90d3ce4823481334888a602e229b588 https://github.com/galaxyproject/galaxy/commit/e11da5fba90d3ce4823481334888a... Author: guerler aysam.guerler@gmail.com Date: 2018-05-02 (Wed, 02 May 2018)

Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml

Log Message: ----------- Fix jqplot: boxplot, histogram

Fix heatmap clustering

Fix nvd3 tool based types

Remove global d3 object from heatmap and jqplot

Commit: a8fe9a73942fd09a5e65ee51d7407952b362f6d4 https://github.com/galaxyproject/galaxy/commit/a8fe9a73942fd09a5e65ee51d7407... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M lib/galaxy/tools/errors.py

Log Message: ----------- The link for specific individual history view has changed, but wasn't updated here in the error report.

Commit: 6a2c678dcedf426319b77a24f686807ceff0b603 https://github.com/galaxyproject/galaxy/commit/6a2c678dcedf426319b77a24f6868... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M client/package.json M client/yarn.lock M static/style/blue/base.css

Log Message: ----------- Bump bootstrap from 4.1.0 to 4.1.1 -- has a few bugfixes and hides the chatty and irrelevant (for us) deprecation warning on client build.

Commit: ba6c3e6c625c8f2f024408541ad2196efdd5b1e4 https://github.com/galaxyproject/galaxy/commit/ba6c3e6c625c8f2f024408541ad21... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml

Log Message: ----------- Merge pull request #6047 from guerler/fix_charts

[18.05] Fix and repack chart tool-based visualizations

Commit: 666fec9f7b005676b1dd14e4a01a9a3df3861968 https://github.com/galaxyproject/galaxy/commit/666fec9f7b005676b1dd14e4a01a9... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M client/package.json M client/yarn.lock M static/style/blue/base.css

Log Message: ----------- Merge pull request #6052 from dannon/bs4_411

[18.05] Bump bootstrap from 4.1.0 to 4.1.1

Commit: 3829b0727d4ef05bdc1680f38babac7ac152350d https://github.com/galaxyproject/galaxy/commit/3829b0727d4ef05bdc1680f38baba... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M templates/display_common.mako

Log Message: ----------- Fix one more use of histories/view

Commit: 8b733df8953431f16b2bd12e4cdd49090115e082 https://github.com/galaxyproject/galaxy/commit/8b733df8953431f16b2bd12e4cdd4... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M lib/galaxy/tools/errors.py M templates/display_common.mako

Log Message: ----------- Merge pull request #6051 from dannon/fix_tool_error_report

[18.05] Fix tool error report history view link

Commit: 3292445872d9333753728828528947dc802a30be https://github.com/galaxyproject/galaxy/commit/3292445872d933375372882852894... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M client/galaxy/scripts/components/RuleCollectionBuilder.vue

Log Message: ----------- Merge pull request #6045 from jmchilton/remove_focus_tooltip

[18.05] Fix for building doubly nested collections.

Commit: 3e49e31707fc0539b859fb11bbfd841fb38dda44 https://github.com/galaxyproject/galaxy/commit/3e49e31707fc0539b859fb11bbfd8... Author: Martin Cech marten@bx.psu.edu Date: 2018-05-03 (Thu, 03 May 2018)

Changed paths: M .ci/jenkins/selenium/run_tests.sh M client/galaxy/scripts/components/RuleCollectionBuilder.vue M client/galaxy/scripts/mvc/rules/rule-definitions.js M client/galaxy/scripts/mvc/visualization/chart/utilities/series.js M client/package.json M client/yarn.lock M config/plugins/visualizations/heatmap/heatmap_default/src/script.js M config/plugins/visualizations/heatmap/heatmap_default/static/script.js M config/plugins/visualizations/jqplot/jqplot_bar/src/script.js M config/plugins/visualizations/jqplot/jqplot_bar/static/script.css M config/plugins/visualizations/jqplot/jqplot_bar/static/script.js M config/plugins/visualizations/nvd3/nvd3_histogram/config/nvd3_histogram.xml M config/plugins/visualizations/nvd3/nvd3_histogram_discrete/config/nvd3_histogram_discrete.xml M lib/galaxy/tools/errors.py M run_tests.sh M static/style/blue/base.css M templates/display_common.mako M test/docker/base/Dockerfile M test/docker/base/ansible_vars.yml M test/docker/base/run_test_wrapper.sh

Log Message: ----------- Merge branch 'release_18.05' into dev

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