# HG changeset patch -- Bitbucket.org # Project galaxy-dist # URL http://bitbucket.org/galaxy/galaxy-dist/overview # User Nate Coraor <nate@bx.psu.edu> # Date 1288986871 14400 # Node ID 702f4717a8f3fe38758c54136f81935f7679c937 # Parent 6d94416b2ccf9205283ec197154d99522615cbf8 Bugfix for the abstracted job runner --- a/lib/galaxy/jobs/runners/__init__.py +++ b/lib/galaxy/jobs/runners/__init__.py @@ -26,7 +26,7 @@ class BaseJobRunner( object ): exec_dir = os.path.abspath( os.getcwd() ), tmp_dir = self.app.config.new_file_path, dataset_files_path = self.app.model.Dataset.file_path, - output_fnames = output_fnames, + output_fnames = job_wrapper.get_output_fnames(), set_extension = False, kwds = { 'overwrite' : False } ) return commands