commit/galaxy-central: natefoo: Generalize setup of chrom length files for buildbot.
1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/defc14c13e9f/ changeset: r5160:defc14c13e9f user: natefoo date: 2011-03-02 22:21:36 summary: Generalize setup of chrom length files for buildbot. affected #: 4 files (73 bytes) --- a/buildbot_setup.sh Wed Mar 02 16:20:16 2011 -0500 +++ b/buildbot_setup.sh Wed Mar 02 16:21:36 2011 -0500 @@ -112,10 +112,13 @@ done # for wig_to_bigWig and bed_to_bigBed -if [ ! -f "tool-data/shared/ucsc/chrom/hg17.len" -a -f "test-data/wig_to_bigwig_hg17.len" ]; then - mkdir -p tool-data/shared/ucsc/chrom - cp test-data/wig_to_bigwig_hg17.len tool-data/shared/ucsc/chrom/hg17.len -fi +for build in hg17 hg18; do + if [ -f "test-data/chrom/$build.len" ]; then + echo "Copying test-data/chrom/$build.len to tool-data/shared/ucsc/chrom/" + mkdir -p tool-data/shared/ucsc/chrom + cp test-data/chrom/$build.len tool-data/shared/ucsc/chrom/$build.len + fi +done if [ -d "test-data-repo" ]; then echo "Updating test data repository" --- a/test-data/wig_to_bigwig_hg17.len Wed Mar 02 16:20:16 2011 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,46 +0,0 @@ -chr10 135413628 -chr10_random 113275 -chr11 134452384 -chr12 132449811 -chr12_random 466818 -chr13 114142980 -chr13_random 186858 -chr14 106368585 -chr15 100338915 -chr15_random 784346 -chr16 88827254 -chr16_random 105485 -chr17 78774742 -chr17_random 2618010 -chr18 76117153 -chr18_random 4262 -chr19 63811651 -chr19_random 301858 -chr1 245522847 -chr1_random 3897131 -chr20 62435964 -chr21 46944323 -chr22 49554710 -chr22_random 257318 -chr2 243018229 -chr2_random 418158 -chr3 199505740 -chr3_random 970716 -chr4 191411218 -chr4_random 1030282 -chr5 180857866 -chr5_random 143687 -chr6 170975699 -chr6_random 1875562 -chr6_hla_hap1 139182 -chr6_hla_hap2 150447 -chr7 158628139 -chr7_random 778964 -chr8 146274826 -chr8_random 943810 -chr9 138429268 -chr9_random 1312665 -chrM 16571 -chrX 154824264 -chrX_random 1719168 -chrY 57701691 Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.
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