Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 734c39d4f58cfc96c637d9121b88b14398a9c4b2 https://github.com/galaxyproject/galaxy/commit/734c39d4f58cfc96c637d9121b88b... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-29 (Mon, 29 Oct 2018) Changed paths: M .gitignore A client/galaxy/jsconfig.json M client/galaxy/scripts/galaxy.js A client/galaxy/scripts/galaxy.monitor.js R client/galaxy/scripts/onload.js A client/galaxy/scripts/onload/index.js A client/galaxy/scripts/onload/loadConfig.js A client/galaxy/scripts/utils/installMonitor.js A client/galaxy/scripts/utils/mock.js A client/galaxy/scripts/utils/serverPath.js M client/webpack.config.js M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- added global monitor for window.Galaxy Commit: 0cdf78956f29abf53e9e2233a6545dc1fba71f5c https://github.com/galaxyproject/galaxy/commit/0cdf78956f29abf53e9e2233a6545... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-29 (Mon, 29 Oct 2018) Changed paths: M client/galaxy/scripts/onload/loadConfig.js M client/galaxy/scripts/utils/installMonitor.js Log Message: ----------- Corrected instructions, removed config function that is not used yet. Commit: 712aa6cb8742674777c4bc0ee36df9f361bfbeab https://github.com/galaxyproject/galaxy/commit/712aa6cb8742674777c4bc0ee36df... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-29 (Mon, 29 Oct 2018) Changed paths: M client/galaxy/scripts/utils/installMonitor.js Log Message: ----------- Removed debugger statements Commit: 4c13d204c454203b17194c6174177de642c0a2ae https://github.com/galaxyproject/galaxy/commit/4c13d204c454203b17194c6174177... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-29 (Mon, 29 Oct 2018) Changed paths: M client/galaxy/scripts/utils/installMonitor.js Log Message: ----------- Corrected monitor value storage initialization Commit: ef5e01da82e532a819a343457ea31bf0cb16baa7 https://github.com/galaxyproject/galaxy/commit/ef5e01da82e532a819a343457ea31... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-29 (Mon, 29 Oct 2018) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- White space awesomeness Commit: 3cf9dd85f4c20801807d0aef74b4628c26ca3f97 https://github.com/galaxyproject/galaxy/commit/3cf9dd85f4c20801807d0aef74b46... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-29 (Mon, 29 Oct 2018) Changed paths: M client/.babelrc M client/galaxy/scripts/polyfills.js M client/package.json M client/yarn.lock Log Message: ----------- Updating babel for proxy support with karma Commit: 04242c75034637f064173eca0c1e2f415343fe93 https://github.com/galaxyproject/galaxy/commit/04242c75034637f064173eca0c1e2... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-30 (Tue, 30 Oct 2018) Changed paths: M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Renamed selenium utility function Commit: 66a7db94053763bfb1cc23ba5df1e537f0177219 https://github.com/galaxyproject/galaxy/commit/66a7db94053763bfb1cc23ba5df1e... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-31 (Wed, 31 Oct 2018) Changed paths: M .gitignore M client/.babelrc R client/GruntFile.js A client/galaxy/images/Armitagep_manhattan.png A client/galaxy/images/Armitagep_qqplot.png A client/galaxy/images/add_icon.png A client/galaxy/images/add_icon_dark.png A client/galaxy/images/aggregate_history1.png A client/galaxy/images/aggregate_history2.png A client/galaxy/images/bar_chart.png A client/galaxy/images/base_bg.png A client/galaxy/images/bed_warn.png A client/galaxy/images/button_bar_bg_light.png A client/galaxy/images/circle.py A client/galaxy/images/closebox.png A client/galaxy/images/dat_points_table_brows_1.png A client/galaxy/images/data_empty.png A client/galaxy/images/data_error.png A client/galaxy/images/data_ok.png A client/galaxy/images/data_queued.png A client/galaxy/images/data_running.gif A client/galaxy/images/ddarrowsplit.png A client/galaxy/images/delete.gif A client/galaxy/images/delete_tag_icon_gray.png A client/galaxy/images/delete_tag_icon_white.png A client/galaxy/images/documents-stack-faded.png A client/galaxy/images/documents-stack.png A client/galaxy/images/done_message_icon.png A client/galaxy/images/dropdownarrow.png A client/galaxy/images/error_bg.png A client/galaxy/images/error_icon.svg A client/galaxy/images/error_large.png A client/galaxy/images/error_message_icon.png A client/galaxy/images/error_small.png A client/galaxy/images/fetchTax.png A client/galaxy/images/footer_title_bg.png A client/galaxy/images/form_body_bg.png A client/galaxy/images/form_title_bg.png A client/galaxy/images/fugue.png A client/galaxy/images/fugue/application-dock-270-bw.png A client/galaxy/images/fugue/application-dock-270.png A client/galaxy/images/fugue/arrow-000-small-bw.png A client/galaxy/images/fugue/arrow-090.png A client/galaxy/images/fugue/arrow-circle.png A client/galaxy/images/fugue/arrow-resize-090-bw.png A client/galaxy/images/fugue/arrow-resize-090.png A client/galaxy/images/fugue/arrow-split-bw.png A client/galaxy/images/fugue/arrow-split.png A client/galaxy/images/fugue/arrow-transition-270-bw.png A client/galaxy/images/fugue/arrow-transition-bw.png A client/galaxy/images/fugue/asterisk-small-outline.png A client/galaxy/images/fugue/asterisk-small-yellow.png A client/galaxy/images/fugue/asterisk-small.png A client/galaxy/images/fugue/block--plus-bw.png A client/galaxy/images/fugue/block--plus.png A client/galaxy/images/fugue/bookmarks-bw.png A client/galaxy/images/fugue/bookmarks.png A client/galaxy/images/fugue/bug.png A client/galaxy/images/fugue/chart.png A client/galaxy/images/fugue/chevron-expand-bw.png A client/galaxy/images/fugue/chevron-expand.png A client/galaxy/images/fugue/chevron.png A client/galaxy/images/fugue/control-270.png A client/galaxy/images/fugue/cross-button.png A client/galaxy/images/fugue/cross-circle-bw.png A client/galaxy/images/fugue/cross-circle.png A client/galaxy/images/fugue/cross-small-bw.png A client/galaxy/images/fugue/cross.png A client/galaxy/images/fugue/disk--arrow-bw.png A client/galaxy/images/fugue/disk--arrow.png A client/galaxy/images/fugue/disk.png A client/galaxy/images/fugue/exclamation.png A client/galaxy/images/fugue/external.png A client/galaxy/images/fugue/eye.png A client/galaxy/images/fugue/gear-bw.png A client/galaxy/images/fugue/gear.png A client/galaxy/images/fugue/globe-bw.png A client/galaxy/images/fugue/globe.png A client/galaxy/images/fugue/hammer-bw.png A client/galaxy/images/fugue/hammer.png A client/galaxy/images/fugue/information-white.png A client/galaxy/images/fugue/layer-transparent-bw.png A client/galaxy/images/fugue/layer-transparent.png A client/galaxy/images/fugue/layers-stack-bw.png A client/galaxy/images/fugue/layers-stack.png A client/galaxy/images/fugue/magnifier-left.png A client/galaxy/images/fugue/magnifier-zoom-out.png A client/galaxy/images/fugue/magnifier-zoom.png A client/galaxy/images/fugue/navigation.png A client/galaxy/images/fugue/pencil-small.png A client/galaxy/images/fugue/pencil.png A client/galaxy/images/fugue/plus-button-bw.png A client/galaxy/images/fugue/plus-button.png A client/galaxy/images/fugue/plus-circle.png A client/galaxy/images/fugue/sticky-note-text.png A client/galaxy/images/fugue/tag--plus.png A client/galaxy/images/fugue/tag-label.png A client/galaxy/images/fugue/tags.png A client/galaxy/images/fugue/toggle-bw.png A client/galaxy/images/fugue/toggle-expand-bw.png A client/galaxy/images/fugue/toggle-expand.png A client/galaxy/images/fugue/toggle.png A client/galaxy/images/fugue/toolbox-bw.png A client/galaxy/images/fugue/toolbox.png A client/galaxy/images/fugue/ui-slider-050-bw.png A client/galaxy/images/fugue/ui-slider-050.png A client/galaxy/images/galaxy_icons.svg A client/galaxy/images/galaxy_spinner.fla A client/galaxy/images/gray_bg.png A client/galaxy/images/hatch-023858.png A client/galaxy/images/hgrad.png A client/galaxy/images/hgrad_over.png A client/galaxy/images/histogram.png A client/galaxy/images/histogram2.png A client/galaxy/images/history-buttons.png A client/galaxy/images/history-states.png A client/galaxy/images/info_icon.svg A client/galaxy/images/info_large.png A client/galaxy/images/info_message_icon.png A client/galaxy/images/info_small.png A client/galaxy/images/jstree/32px.png A client/galaxy/images/jstree/40px.png A client/galaxy/images/jstree/throbber.gif A client/galaxy/images/kendall.png A client/galaxy/images/largespinner.gif A client/galaxy/images/layout_callout_top.png A client/galaxy/images/light_gray_grid.gif A client/galaxy/images/mag_glass.png A client/galaxy/images/masthead_bg.png A client/galaxy/images/menu_bg.png A client/galaxy/images/mutation_visualization_example.png A client/galaxy/images/ok_bg.png A client/galaxy/images/ok_icon.svg A client/galaxy/images/ok_large.png A client/galaxy/images/ok_small.png A client/galaxy/images/overview_arrows.png A client/galaxy/images/panel_header_bg.png A client/galaxy/images/pearson.png A client/galaxy/images/popupmenu_callout_top.png A client/galaxy/images/question-balloon.png A client/galaxy/images/question-octagon-frame.png A client/galaxy/images/resizable.png A client/galaxy/images/scatter.png A client/galaxy/images/scatterplot.png A client/galaxy/images/select2-spinner.gif A client/galaxy/images/select2.png A client/galaxy/images/select2x2.png A client/galaxy/images/silk/add.png A client/galaxy/images/silk/book.png A client/galaxy/images/silk/book_open.png A client/galaxy/images/silk/chart_curve.png A client/galaxy/images/silk/folder.png A client/galaxy/images/silk/folder_page.png A client/galaxy/images/silk/link.png A client/galaxy/images/silk/link_break.png A client/galaxy/images/silk/page_white.png A client/galaxy/images/silk/page_white_compressed.png A client/galaxy/images/silk/resultset_bottom.png A client/galaxy/images/silk/resultset_next.png A client/galaxy/images/silk/resultset_previous.png A client/galaxy/images/solid_qual.png A client/galaxy/images/spearman.png A client/galaxy/images/sprite-fugue.png A client/galaxy/images/sprite-history-buttons.png A client/galaxy/images/sprite-history-states.png A client/galaxy/images/star.gif A client/galaxy/images/thumbtack_icon.png A client/galaxy/images/thumbtack_icon_dark.png A client/galaxy/images/tiny_arrow_left.png A client/galaxy/images/tiny_arrow_right.png A client/galaxy/images/tipsy.gif A client/galaxy/images/tracks/block.png A client/galaxy/images/tracks/close_btn.gif A client/galaxy/images/tracks/diag_bg.gif A client/galaxy/images/tracks/go_btn.gif A client/galaxy/images/tracks/handle-left.gif A client/galaxy/images/tracks/handle-right.gif A client/galaxy/images/tracks/pan_left.gif A client/galaxy/images/tracks/pan_right.gif A client/galaxy/images/tracks/show_history.gif A client/galaxy/images/tracks/zoom_in.gif A client/galaxy/images/tracks/zoom_in_full.gif A client/galaxy/images/tracks/zoom_out.gif A client/galaxy/images/tracks/zoom_out_full.gif A client/galaxy/images/visualization/draggable_horizontal.png A client/galaxy/images/visualization/draggable_vertical.png A client/galaxy/images/visualization/strand_left.png A client/galaxy/images/visualization/strand_left_inv.png A client/galaxy/images/visualization/strand_right.png A client/galaxy/images/visualization/strand_right_inv.png A client/galaxy/images/wait_icon.svg A client/galaxy/images/wait_large.png A client/galaxy/images/wait_small.png A client/galaxy/images/warn_bg.png A client/galaxy/images/warn_icon.svg A client/galaxy/images/warn_large.png A client/galaxy/images/warn_message_icon.png A client/galaxy/images/warn_small.png A client/galaxy/images/workflow_circle_drag.png A client/galaxy/images/workflow_circle_green.png A client/galaxy/images/workflow_circle_open.png M client/galaxy/scripts/apps/admin.js M client/galaxy/scripts/apps/analysis.js M client/galaxy/scripts/apps/chart.js M client/galaxy/scripts/apps/extended.js M client/galaxy/scripts/apps/login.js M client/galaxy/scripts/galaxy.js M client/galaxy/scripts/layout/masthead.js M client/galaxy/scripts/layout/menu.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/layout/panel.js M client/galaxy/scripts/layout/router.js M client/galaxy/scripts/layout/scratchbook.js M client/galaxy/scripts/mvc/base-mvc.js M client/galaxy/scripts/mvc/base/controlled-fetch-collection.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/dataset/data.js M client/galaxy/scripts/mvc/history/history-contents.js M client/galaxy/scripts/mvc/history/history-list.js M client/galaxy/scripts/mvc/history/history-model.js M client/galaxy/scripts/mvc/history/history-view-edit-current.js M client/galaxy/scripts/mvc/history/history-view.js M client/galaxy/scripts/mvc/history/job-states-model.js M client/galaxy/scripts/mvc/history/multi-panel.js M client/galaxy/scripts/mvc/tool/tools.js M client/galaxy/scripts/mvc/tours.js M client/galaxy/scripts/mvc/user/user-model.js M client/galaxy/scripts/mvc/workflow/workflow-node.js M client/galaxy/scripts/onload/index.js M client/galaxy/scripts/polyfills.js M client/galaxy/scripts/qunit/assets/base.css M client/galaxy/scripts/qunit/tests/galaxy_app_base_tests.js M client/galaxy/scripts/reports/run_stats.js A client/galaxy/scripts/style.js M client/galaxy/scripts/utils/config.js M client/galaxy/scripts/viz/phyloviz.js M client/galaxy/scripts/viz/sweepster.js M client/galaxy/scripts/viz/trackster.js M client/galaxy/scripts/viz/trackster/tracks.js M client/galaxy/scripts/viz/visualization.js M client/galaxy/style/scss/autocomplete_tagging.scss M client/galaxy/style/scss/base.scss M client/galaxy/style/scss/iconic_stroke.scss A client/galaxy/style/scss/jquery.rating.scss M client/galaxy/style/scss/jstree.scss M client/galaxy/style/scss/select2.scss A client/galaxy/style/scss/sprite-fugue.scss A client/galaxy/style/scss/sprite-history-buttons.scss A client/galaxy/style/scss/sprite-history-states.scss M client/galaxy/style/scss/trackster.scss R client/galaxy/style/source_material/circle.py R client/galaxy/style/source_material/error_icon.svg R client/galaxy/style/source_material/galaxy_icons.svg R client/galaxy/style/source_material/galaxy_spinner.fla R client/galaxy/style/source_material/info_icon.svg R client/galaxy/style/source_material/ok_icon.svg R client/galaxy/style/source_material/wait_icon.svg R client/galaxy/style/source_material/warn_icon.svg M client/gulpfile.js M client/karma.config.js M client/package.json M client/webpack.config.js M client/yarn.lock M config/datatypes_conf.xml.sample M config/plugins/visualizations/common/templates/chart_entry_point.mako M config/plugins/webhooks/demo/tour_generator/config.yml A config/plugins/webhooks/demo/tour_generator/package.json M config/plugins/webhooks/demo/tour_generator/script.js A config/plugins/webhooks/demo/tour_generator/tour_generator.js M doc/source/dev/faq.rst M doc/source/releases/18.09_announce.rst M lib/galaxy/datatypes/binary.py M lib/galaxy/datatypes/blast.py M lib/galaxy/datatypes/interval.py M lib/galaxy/datatypes/molecules.py M lib/galaxy/datatypes/mothur.py M lib/galaxy/datatypes/phylip.py M lib/galaxy/datatypes/registry.py M lib/galaxy/datatypes/sequence.py M lib/galaxy/datatypes/sniff.py M lib/galaxy/datatypes/tabular.py A lib/galaxy/datatypes/test/0.txt M lib/galaxy/datatypes/test/1.afg M lib/galaxy/datatypes/test/1.bcf_uncompressed A lib/galaxy/datatypes/test/1.excel.xls M lib/galaxy/datatypes/test/1.fastq A lib/galaxy/datatypes/test/1.fastqcssanger M lib/galaxy/datatypes/test/1.fastqsanger M lib/galaxy/datatypes/test/1.fastqsolexa A lib/galaxy/datatypes/test/1.json M lib/galaxy/datatypes/test/1.owl A lib/galaxy/datatypes/test/1.qname_sorted.bam M lib/galaxy/datatypes/test/1.stockholm R lib/galaxy/datatypes/test/1.vcf.gz A lib/galaxy/datatypes/test/1.vcf_bgzip R lib/galaxy/datatypes/test/1.xls M lib/galaxy/datatypes/test/2.fastq R lib/galaxy/datatypes/test/2.fastqsanger M lib/galaxy/datatypes/test/2.fastqsolexa R lib/galaxy/datatypes/test/2.shuffled.bam A lib/galaxy/datatypes/test/2.shuffled.unsorted.bam M lib/galaxy/datatypes/test/2.txt A lib/galaxy/datatypes/test/3.fastq M lib/galaxy/datatypes/test/3.txt M lib/galaxy/datatypes/test/454Score.pdf M lib/galaxy/datatypes/test/5e5z.pqr R lib/galaxy/datatypes/test/Acanium.hmm A lib/galaxy/datatypes/test/Acanium.snaphmm M lib/galaxy/datatypes/test/alignment.lav R lib/galaxy/datatypes/test/biom2_sparse_otu_table_hdf5.biom A lib/galaxy/datatypes/test/biom2_sparse_otu_table_hdf5.biom2 A lib/galaxy/datatypes/test/gff.gff3 R lib/galaxy/datatypes/test/gff_version_3.gff A lib/galaxy/datatypes/test/interv1.bed R lib/galaxy/datatypes/test/interval1.bed M lib/galaxy/datatypes/test/mothur_datatypetest_true.mothur.filter R lib/galaxy/datatypes/test/sequence.qual M lib/galaxy/datatypes/test/sequence.qual454 M lib/galaxy/datatypes/test/sequence.qualsolid A lib/galaxy/datatypes/test/tblastn_four_human_vs_rhodopsin.blastxml R lib/galaxy/datatypes/test/tblastn_four_human_vs_rhodopsin.xml R lib/galaxy/datatypes/test/test.CEL A lib/galaxy/datatypes/test/test.cel R lib/galaxy/datatypes/test/test.idpDB A lib/galaxy/datatypes/test/test.idpdb R lib/galaxy/datatypes/test/test_ensembl.tab A lib/galaxy/datatypes/test/test_ensembl.tabular M lib/galaxy/datatypes/test/test_tab.bed M lib/galaxy/datatypes/test/ucsc.customtrack M lib/galaxy/datatypes/test/wiggle.wig M lib/galaxy/datatypes/text.py M lib/galaxy/datatypes/upload_util.py M lib/galaxy/jobs/runners/kubernetes.py M lib/galaxy/model/custom_types.py M lib/galaxy/util/checkers.py M run_tests.sh M scripts/bootstrap_history.py M scripts/get_uwsgi_args.py R static/GruntFile.js R static/images/Armitagep_manhattan.png R static/images/Armitagep_qqplot.png R static/images/add_icon.png R static/images/add_icon_dark.png R static/images/aggregate_history1.png R static/images/aggregate_history2.png R static/images/bar_chart.png R static/images/bed_warn.png R static/images/closebox.png R static/images/dat_points_table_brows_1.png R static/images/ddarrowsplit.png R static/images/delete.gif A static/images/delete_tag_icon_gray.png R static/images/delete_tag_icon_gray.png R static/images/delete_tag_icon_white.png R static/images/documents-stack-faded.png R static/images/documents-stack.png R static/images/dropdownarrow.png R static/images/fetchTax.png A static/images/fugue R static/images/fugue/application-dock-270-bw.png R static/images/fugue/application-dock-270.png R static/images/fugue/arrow-000-small-bw.png R static/images/fugue/arrow-090.png R static/images/fugue/arrow-circle.png R static/images/fugue/arrow-resize-090-bw.png R static/images/fugue/arrow-resize-090.png R static/images/fugue/arrow-split-bw.png R static/images/fugue/arrow-split.png R static/images/fugue/arrow-transition-270-bw.png R static/images/fugue/arrow-transition-bw.png R static/images/fugue/asterisk-small-outline.png R static/images/fugue/asterisk-small-yellow.png R static/images/fugue/asterisk-small.png R static/images/fugue/block--plus-bw.png R static/images/fugue/block--plus.png R static/images/fugue/bookmarks-bw.png R static/images/fugue/bookmarks.png R static/images/fugue/bug.png R static/images/fugue/chart.png R static/images/fugue/chevron-expand-bw.png R static/images/fugue/chevron-expand.png R static/images/fugue/chevron.png R static/images/fugue/control-270.png R static/images/fugue/cross-button.png R static/images/fugue/cross-circle-bw.png R static/images/fugue/cross-circle.png R static/images/fugue/cross-small-bw.png R static/images/fugue/cross.png R static/images/fugue/disk--arrow-bw.png R static/images/fugue/disk--arrow.png R static/images/fugue/disk.png R static/images/fugue/exclamation.png R static/images/fugue/external.png R static/images/fugue/eye.png R static/images/fugue/gear-bw.png R static/images/fugue/gear.png R static/images/fugue/globe-bw.png R static/images/fugue/globe.png R static/images/fugue/hammer-bw.png R static/images/fugue/hammer.png R static/images/fugue/information-white.png R static/images/fugue/layer-transparent-bw.png R static/images/fugue/layer-transparent.png R static/images/fugue/layers-stack-bw.png R static/images/fugue/layers-stack.png R static/images/fugue/magnifier-left.png R static/images/fugue/magnifier-zoom-out.png R static/images/fugue/magnifier-zoom.png R static/images/fugue/navigation.png R static/images/fugue/pencil-small.png R static/images/fugue/pencil.png R static/images/fugue/plus-button-bw.png R static/images/fugue/plus-button.png R static/images/fugue/plus-circle.png R static/images/fugue/sticky-note-text.png R static/images/fugue/tag--plus.png R static/images/fugue/tag-label.png R static/images/fugue/tags.png R static/images/fugue/toggle-bw.png R static/images/fugue/toggle-expand-bw.png R static/images/fugue/toggle-expand.png R static/images/fugue/toggle.png R static/images/fugue/toolbox-bw.png R static/images/fugue/toolbox.png R static/images/fugue/ui-slider-050-bw.png R static/images/fugue/ui-slider-050.png R static/images/hatch-023858.png R static/images/histogram.png R static/images/histogram2.png R static/images/jstree/32px.png R static/images/jstree/40px.png R static/images/jstree/throbber.gif R static/images/kendall.png R static/images/light_gray_grid.gif R static/images/mag_glass.png R static/images/mutation_visualization_example.png R static/images/overview_arrows.png R static/images/pearson.png R static/images/resizable.png R static/images/scatter.png R static/images/scatterplot.png R static/images/select2-spinner.gif R static/images/select2.png R static/images/select2x2.png R static/images/silk/add.png R static/images/silk/book.png R static/images/silk/book_open.png R static/images/silk/chart_curve.png R static/images/silk/folder.png R static/images/silk/folder_page.png R static/images/silk/link.png R static/images/silk/link_break.png R static/images/silk/page_white.png R static/images/silk/page_white_compressed.png R static/images/silk/resultset_bottom.png R static/images/silk/resultset_next.png R static/images/silk/resultset_previous.png R static/images/solid_qual.png R static/images/spearman.png R static/images/star.gif R static/images/thumbtack_icon.png R static/images/thumbtack_icon_dark.png R static/images/tipsy.gif A static/images/tracks R static/images/tracks/block.png R static/images/tracks/close_btn.gif R static/images/tracks/diag_bg.gif R static/images/tracks/go_btn.gif R static/images/tracks/handle-left.gif R static/images/tracks/handle-right.gif R static/images/tracks/pan_left.gif R static/images/tracks/pan_right.gif R static/images/tracks/show_history.gif R static/images/tracks/zoom_in.gif R static/images/tracks/zoom_in_full.gif R static/images/tracks/zoom_out.gif R static/images/tracks/zoom_out_full.gif A static/images/visualization R static/images/visualization/draggable_horizontal.png R static/images/visualization/draggable_vertical.png R static/images/visualization/strand_left.png R static/images/visualization/strand_left_inv.png R static/images/visualization/strand_right.png R static/images/visualization/strand_right_inv.png M static/style/base.css A static/style/blue/base.css R static/style/blue/base.css R static/style/blue/base_bg.png R static/style/blue/button_bar_bg_light.png R static/style/blue/data_empty.png R static/style/blue/data_error.png R static/style/blue/data_ok.png R static/style/blue/data_queued.png R static/style/blue/done_message_icon.png R static/style/blue/error_bg.png R static/style/blue/error_large.png R static/style/blue/error_message_icon.png R static/style/blue/error_small.png R static/style/blue/footer_title_bg.png R static/style/blue/form_body_bg.png R static/style/blue/form_title_bg.png R static/style/blue/fugue.png R static/style/blue/gray_bg.png R static/style/blue/hgrad.png R static/style/blue/hgrad_over.png R static/style/blue/history-buttons.png R static/style/blue/history-states.png R static/style/blue/info_large.png R static/style/blue/info_message_icon.png R static/style/blue/info_small.png R static/style/blue/largespinner.gif R static/style/blue/layout_callout_top.png R static/style/blue/masthead_bg.png R static/style/blue/menu_bg.png R static/style/blue/ok_bg.png R static/style/blue/ok_large.png A static/style/blue/ok_small.png R static/style/blue/ok_small.png R static/style/blue/panel_header_bg.png R static/style/blue/popupmenu_callout_top.png R static/style/blue/question-balloon.png A static/style/blue/question-octagon-frame.png R static/style/blue/question-octagon-frame.png R static/style/blue/tiny_arrow_left.png R static/style/blue/tiny_arrow_right.png M static/style/blue/trackster.css R static/style/blue/wait_large.png R static/style/blue/wait_small.png R static/style/blue/warn_bg.png R static/style/blue/warn_large.png R static/style/blue/warn_message_icon.png R static/style/blue/warn_small.png R static/style/blue/workflow_circle_drag.png R static/style/blue/workflow_circle_green.png R static/style/blue/workflow_circle_open.png R static/style/shared_images/data_running.gif R static/style/shared_images/error_large.png R static/style/shared_images/error_small.png R static/style/shared_images/info_large.png R static/style/shared_images/info_small.png R static/style/shared_images/ok_large.png R static/style/shared_images/ok_small.png R static/style/shared_images/wait_large.png R static/style/shared_images/wait_small.png R static/style/shared_images/warn_large.png R static/style/shared_images/warn_small.png M static/welcome.html.sample M templates/admin/tool_shed_repository/browse_repository.mako M templates/admin/tool_shed_repository/browse_tool_dependency.mako M templates/admin/tool_shed_repository/manage_repository.mako M templates/admin/tool_shed_repository/reselect_tool_panel_section.mako M templates/admin/tool_shed_repository/select_tool_panel_section.mako M templates/base.mako M templates/base/base_panels.mako M templates/galaxy_client_app.mako M templates/js-app.mako M templates/legacy/grid_base.mako M templates/webapps/galaxy/galaxy.panels.mako M templates/webapps/galaxy/visualization/display.mako M templates/webapps/galaxy/visualization/gie.mako M templates/webapps/galaxy/visualization/sweepster.mako M templates/webapps/galaxy/workflow/editor.mako M templates/webapps/reports/run_stats.mako M templates/webapps/tool_shed/repository/browse_repository.mako M templates/webapps/tool_shed/repository/manage_repository.mako M templates/webapps/tool_shed/repository/preview_tools_in_changeset.mako M templates/webapps/tool_shed/repository/rate_repository.mako M templates/webapps/tool_shed/repository/upload.mako M templates/webapps/tool_shed/repository/view_changelog.mako M templates/webapps/tool_shed/repository/view_changeset.mako M templates/webapps/tool_shed/repository/view_repository.mako M templates/webapps/tool_shed/repository_review/browse_review.mako M templates/webapps/tool_shed/repository_review/edit_review.mako M templates/webapps/tool_shed/repository_review/reviews_of_changeset_revision.mako M templates/webapps/tool_shed/repository_review/reviews_of_repository.mako M templates/webapps/tool_shed/repository_review/select_previous_review.mako M test/base/driver_util.py M test/base/populators.py A test/integration/test_datatype_upload.py M test/unit/datatypes/test_bam.py M test/unit/datatypes/test_vcf.py Log Message: ----------- Merged dev Commit: 294cfbf6716dbac554da36f0c410276669c1dce9 https://github.com/galaxyproject/galaxy/commit/294cfbf6716dbac554da36f0c4102... Author: Mason <nerdinacan@gmail.com> Date: 2018-10-31 (Wed, 31 Oct 2018) Changed paths: M client/webpack.config.js Log Message: ----------- Updated provide monitored proxy for Galaxy references Commit: d7d5e04f9276ba3c1cd9ef2c1a09ede1fc9f5ed0 https://github.com/galaxyproject/galaxy/commit/d7d5e04f9276ba3c1cd9ef2c1a09e... Author: Mason <nerdinacan@gmail.com> Date: 2018-11-05 (Mon, 05 Nov 2018) Changed paths: M client/galaxy/scripts/utils/installMonitor.js Log Message: ----------- Changed toggle to installation toggle instead of logging toggle Commit: 5ffd438ebfef26c55b9b11da2f24abd6c2772b43 https://github.com/galaxyproject/galaxy/commit/5ffd438ebfef26c55b9b11da2f24a... Author: Mason <nerdinacan@gmail.com> Date: 2018-11-05 (Mon, 05 Nov 2018) Changed paths: M client/galaxy/scripts/utils/installMonitor.js Log Message: ----------- Updated install console functions and instructions Commit: 11375a5692fe541e3df257f3ce2e36cd6f39a1f8 https://github.com/galaxyproject/galaxy/commit/11375a5692fe541e3df257f3ce2e3... Author: Mason <nerdinacan@gmail.com> Date: 2018-11-05 (Mon, 05 Nov 2018) Changed paths: M .travis.yml M Makefile M client/galaxy/scripts/qunit/test.js A client/galaxy/scripts/sample.test.js A client/galaxy/scripts/unitTestBundle.js M client/galaxy/style/scss/ui.scss R client/karma.config.js A client/karma/karma.config.base.js A client/karma/karma.config.mocha.js A client/karma/karma.config.qunit.js A client/karma/webpack.config.qunit.js A client/karma/webpack.config.unittest.js M client/package.json M client/yarn.lock M config/datatypes_conf.xml.sample M config/migrated_tools_conf.xml.sample M config/shed_tool_conf.xml.sample M doc/source/admin/tool_panel.rst M lib/galaxy/datatypes/binary.py A lib/galaxy/datatypes/converters/tar_to_directory.xml M lib/galaxy/datatypes/data.py A lib/galaxy/datatypes/test/diamond.rma6 M lib/galaxy/tools/__init__.py M lib/galaxy/tools/data/__init__.py M lib/galaxy/tools/parameters/grouping.py M lib/galaxy/tools/parameters/history_query.py M lib/galaxy/util/compression_utils.py M lib/galaxy/webapps/galaxy/api/datasets.py M lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py M lib/galaxy/webapps/galaxy/buildapp.py M lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py M lib/galaxy/workflow/modules.py M lib/galaxy/workflow/run.py M lib/tool_shed/galaxy_install/migrate/check.py M lib/tool_shed/util/common_util.py M templates/admin/tool_shed_repository/monitor_repository_installation.mako M templates/webapps/galaxy/admin/manage_dependencies.mako M templates/webapps/galaxy/admin/sanitize_whitelist.mako M templates/webapps/galaxy/admin/tool_sheds.mako M templates/webapps/galaxy/admin/view_display_applications.mako M test/api/test_tools.py M test/api/test_tools_upload.py M test/api/test_workflows.py M test/base/populators.py M test/functional/tools/sample_datatypes_conf.xml M test/integration/test_upload_configuration_options.py M test/unit/workflows/test_workflow_progress.py M tools/data_source/upload.py M tools/data_source/upload.xml Log Message: ----------- Merge branch 'dev' into window_monitor Commit: 38e9225aff0997efe3b023cf28ec869faa09d161 https://github.com/galaxyproject/galaxy/commit/38e9225aff0997efe3b023cf28ec8... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-11-05 (Mon, 05 Nov 2018) Changed paths: M client/galaxy/jsconfig.json M client/galaxy/scripts/onload/index.js M client/galaxy/scripts/sample.test.js M client/galaxy/scripts/unitTestBundle.js M client/galaxy/scripts/utils/installMonitor.js M client/galaxy/scripts/utils/mock.js Log Message: ----------- Client format Commit: 4405d15fea61b2610045ecfe4a6a1a0922142df8 https://github.com/galaxyproject/galaxy/commit/4405d15fea61b2610045ecfe4a6a1... Author: Dannon Baker <dannon.baker@gmail.com> Date: 2018-11-05 (Mon, 05 Nov 2018) Changed paths: M .gitignore A client/galaxy/jsconfig.json M client/galaxy/scripts/galaxy.js A client/galaxy/scripts/galaxy.monitor.js R client/galaxy/scripts/onload.js A client/galaxy/scripts/onload/index.js A client/galaxy/scripts/onload/loadConfig.js M client/galaxy/scripts/sample.test.js M client/galaxy/scripts/unitTestBundle.js A client/galaxy/scripts/utils/installMonitor.js A client/galaxy/scripts/utils/mock.js A client/galaxy/scripts/utils/serverPath.js M client/webpack.config.js M test/galaxy_selenium/navigates_galaxy.py Log Message: ----------- Merge branch 'window_monitor' into dev Compare: https://github.com/galaxyproject/galaxy/compare/e9f269393346...4405d15fea61 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.