1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/d8bff94d8aac/ changeset: d8bff94d8aac user: greg date: 2012-08-28 17:49:43 summary: Apply the improvements for generation of tool shed URLs to the repository controller. affected #: 2 files

diff -r 4b05f621540cb46fd8b120997258008b37050f63 -r d8bff94d8aac276ff77b65104c958ab5cc9ee243 lib/galaxy/web/controllers/admin_toolshed.py --- a/lib/galaxy/web/controllers/admin_toolshed.py +++ b/lib/galaxy/web/controllers/admin_toolshed.py @@ -392,8 +392,9 @@ # Send a request to the relevant tool shed to see if there are any updates. repository = get_repository( trans, kwd[ 'id' ] ) tool_shed_url = get_url_from_repository_tool_shed( trans.app, repository ) - url = url_join( tool_shed_url, 'repository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ - ( url_for( '/', qualified=True ), repository.name, repository.owner, repository.changeset_revision ) ) + url = url_join( tool_shed_url, + 'repository/check_for_updates?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ + ( url_for( '/', qualified=True ), repository.name, repository.owner, repository.changeset_revision ) ) return trans.response.send_redirect( url ) @web.expose @web.require_admin @@ -634,8 +635,9 @@ tool_shed_repository, trans.model.ToolShedRepository.installation_status.SETTING_TOOL_VERSIONS ) tool_shed_url = get_url_from_repository_tool_shed( trans.app, tool_shed_repository ) - url = url_join( tool_shed_url, '/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ - ( tool_shed_repository.name, tool_shed_repository.owner, tool_shed_repository.changeset_revision ) ) + url = url_join( tool_shed_url, + '/repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ + ( tool_shed_repository.name, tool_shed_repository.owner, tool_shed_repository.changeset_revision ) ) response = urllib2.urlopen( url ) text = response.read() response.close() @@ -954,7 +956,9 @@ repository_ids = kwd.get( 'repository_ids', None ) changeset_revisions = kwd.get( 'changeset_revisions', None ) # Get the information necessary to install each repository. - url = url_join( tool_shed_url, 'repository/get_repository_information?repository_ids=%s&changeset_revisions=%s&webapp=galaxy' % ( repository_ids, changeset_revisions ) ) + url = url_join( tool_shed_url, + 'repository/get_repository_information?repository_ids=%s&changeset_revisions=%s&webapp=galaxy' % \ + ( repository_ids, changeset_revisions ) ) response = urllib2.urlopen( url ) raw_text = response.read() response.close() @@ -1097,8 +1101,9 @@ name = repo_info_dict.keys()[ 0 ] repo_info_tuple = repo_info_dict[ name ] description, repository_clone_url, changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple - url = url_join( tool_shed_url, 'repository/get_readme?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ - ( name, repository_owner, changeset_revision ) ) + url = url_join( tool_shed_url, + 'repository/get_readme?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ + ( name, repository_owner, changeset_revision ) ) response = urllib2.urlopen( url ) raw_text = response.read() response.close() @@ -1273,8 +1278,9 @@ tool_shed = get_tool_shed_from_clone_url( repository_clone_url ) # Get all previous change set revisions from the tool shed for the repository back to, but excluding, the previous valid changeset # revision to see if it was previously installed using one of them. - url = url_join( tool_shed_url, 'repository/previous_changeset_revisions?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ - ( url_for( '/', qualified=True ), repository_name, repository_owner, changeset_revision ) ) + url = url_join( tool_shed_url, + 'repository/previous_changeset_revisions?galaxy_url=%s&name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ + ( url_for( '/', qualified=True ), repository_name, repository_owner, changeset_revision ) ) response = urllib2.urlopen( url ) text = response.read() response.close() @@ -1350,8 +1356,9 @@ # Get the tool_versions from the tool shed for each tool in the installed change set. repository = get_repository( trans, kwd[ 'id' ] ) tool_shed_url = get_url_from_repository_tool_shed( trans.app, repository ) - url = url_join( tool_shed_url, 'repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ - ( repository.name, repository.owner, repository.changeset_revision ) ) + url = url_join( tool_shed_url, + 'repository/get_tool_versions?name=%s&owner=%s&changeset_revision=%s&webapp=galaxy' % \ + ( repository.name, repository.owner, repository.changeset_revision ) ) response = urllib2.urlopen( url ) text = response.read() response.close()

diff -r 4b05f621540cb46fd8b120997258008b37050f63 -r d8bff94d8aac276ff77b65104c958ab5cc9ee243 lib/galaxy/webapps/community/controllers/repository.py --- a/lib/galaxy/webapps/community/controllers/repository.py +++ b/lib/galaxy/webapps/community/controllers/repository.py @@ -11,7 +11,7 @@ from galaxy.model.orm import * from galaxy.util.shed_util import create_repo_info_dict, get_changectx_for_changeset, get_configured_ui, get_repository_file_contents, NOT_TOOL_CONFIGS from galaxy.util.shed_util import open_repository_files_folder, reversed_lower_upper_bounded_changelog, reversed_upper_bounded_changelog, strip_path -from galaxy.util.shed_util import to_html_escaped, update_repository +from galaxy.util.shed_util import to_html_escaped, update_repository, url_join from galaxy.tool_shed.encoding_util import * from common import *

@@ -749,9 +749,10 @@ update = 'true' no_update = 'false' else: - # Start building up the url to redirect back to the calling Galaxy instance. - url = '%sadmin_toolshed/update_to_changeset_revision?tool_shed_url=%s' % ( galaxy_url, url_for( '/', qualified=True ) ) - url += '&name=%s&owner=%s&changeset_revision=%s&latest_changeset_revision=' % ( repository.name, repository.user.username, changeset_revision ) + # Start building up the url to redirect back to the calling Galaxy instance. + url = url_join( galaxy_url, + 'admin_toolshed/update_to_changeset_revision?tool_shed_url=%s&name=%s&owner=%s&changeset_revision=%s&latest_changeset_revision=' % \ + ( url_for( '/', qualified=True ), repository.name, repository.user.username, changeset_revision ) ) if changeset_revision == repository.tip: # If changeset_revision is the repository tip, there are no additional updates. if from_update_manager: @@ -1395,10 +1396,9 @@ """Send the list of repository_ids and changeset_revisions to Galaxy so it can begin the installation process.""" galaxy_url = trans.get_cookie( name='toolshedgalaxyurl' ) # Redirect back to local Galaxy to perform install. - url = '%sadmin_toolshed/prepare_for_install' % galaxy_url - url += '?tool_shed_url=%s' % url_for( '/', qualified=True ) - url += '&repository_ids=%s' % ','.join( util.listify( repository_ids ) ) - url += '&changeset_revisions=%s' % ','.join( util.listify( changeset_revisions ) ) + url = url_join( galaxy_url, + 'admin_toolshed/prepare_for_install?tool_shed_url=%s&repository_ids=%s&changeset_revisions=%s' % \ + ( url_for( '/', qualified=True ), ','.join( util.listify( repository_ids ) ), ','.join( util.listify( changeset_revisions ) ) ) ) return trans.response.send_redirect( url ) @web.expose def load_invalid_tool( self, trans, repository_id, tool_config, changeset_revision, **kwd ):

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