# HG changeset patch --
Bitbucket.org
# Project galaxy-dist
# URL
http://bitbucket.org/galaxy/galaxy-dist/overview
# User Dan Blankenberg <dan(a)bx.psu.edu>
# Date 1275511239 14400
# Node ID a12eeed213ff6d8581073ad77914b12dfc26f9bd
# Parent 1dba26a363abfb488b8021f3c86c75651fce81b0
Resync Annotation Profiler tests to current cached data.
--- a/test-data/annotation_profiler_1.out
+++ b/test-data/annotation_profiler_1.out
@@ -1,8 +1,8 @@
chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + multiz17way 1700000 1
-chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + knownAlt 14617 57
+chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + mrna 1476531 12
chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + multiz28way 1700000 1
chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + refGene 1247808 15
-chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + mrna 1476531 12
+chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + knownAlt 14617 57
chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + affyGnf1h 16218 2
chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + snp126 8224 7262
chr22 30128507 31828507 uc003bnx.1_cds_2_0_chr22_29227_f 0 + acembly 1532618 20
--- a/tools/annotation_profiler/annotation_profiler.xml
+++ b/tools/annotation_profiler/annotation_profiler.xml
@@ -27,14 +27,14 @@
<param name="input1" value="4.bed"
dbkey="hg18"/><param name="keep_empty"
value=""/><param name="summary" value=""/>
- <param name="table_names"
value="acembly,affyGnf1h,affyHuEx1,knownAlt,knownGene,mrna,multiz17way,multiz28way,refGene,snp126"/>
+ <param name="table_names"
value="acembly,affyGnf1h,knownAlt,knownGene,mrna,multiz17way,multiz28way,refGene,snp126"/><output
name="out_file1" file="annotation_profiler_1.out"
/></test><test><param name="input1" value="3.bed"
dbkey="hg18"/><param name="keep_empty"
value=""/><param name="summary" value="Summary"/>
- <param name="table_names"
value="acembly,affyGnf1h,affyHuEx1,knownAlt,knownGene,mrna,multiz17way,multiz28way,refGene,snp126"/>
+ <param name="table_names"
value="acembly,affyGnf1h,knownAlt,knownGene,mrna,multiz17way,multiz28way,refGene,snp126"/><output
name="out_file1" file="annotation_profiler_2.out"
/></test></tests>
--- a/test-data/annotation_profiler_2.out
+++ b/test-data/annotation_profiler_2.out
@@ -1,9 +1,9 @@
#tableName tableChromosomeCoverage tableChromosomeCount tableRegionCoverage tableRegionCount allIntervalCount allIntervalSize allCoverage allTableRegionsOverlaped allIntervalsOverlapingTable nrIntervalCount nrIntervalSize nrCoverage nrTableRegionsOverlaped nrIntervalsOverlapingTable
multiz17way 1232617592 115 107496500 7 25 2178864 2178864 25 25 24 2178828 2178828 7 24
-knownAlt 8647368 20213 766619 1630 25 2178864 5612 31 11 24 2178828 5612 31 11
+mrna 610115393 8453 53577685 617 25 2178864 1904380 38 24 24 2178828 1904344 33 23
multiz28way 1233785185 143 107466479 10 25 2178864 2178864 25 25 24 2178828 2178828 8 24
refGene 496767116 7324 46112187 488 25 2178864 1677947 30 23 24 2178828 1677911 27 22
-mrna 610115393 8453 53577685 617 25 2178864 1904380 38 24 24 2178828 1904344 33 23
+knownAlt 8647368 20213 766619 1630 25 2178864 5612 31 11 24 2178828 5612 31 11
affyGnf1h 24034558 3995 2446754 307 25 2178864 191851 9 6 24 2178828 191851 9 6
snp126 5297125 4456213 382226 331523 25 2178864 9205 7074 25 24 2178828 9205 7074 24
acembly 710938193 13800 63146381 938 25 2178864 1903560 35 24 24 2178828 1903524 30 23