Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 08eb9859f25dff98edbf2fc4be95012219d389a5 https://github.com/galaxyproject/galaxy/commit/08eb9859f25dff98edbf2fc4be950... Author: Martin Cech marten@bx.psu.edu Date: 2017-11-13 (Mon, 13 Nov 2017)

Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py

Log Message: ----------- enhance hdca creation endpoint to accept lddas

by implementing automatic conversion of any such elements

Commit: 5609bfc307cd9a6bdd86cd49128d3c4f8407613b https://github.com/galaxyproject/galaxy/commit/5609bfc307cd9a6bdd86cd49128d3... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)

Changed paths: M test/api/test_libraries.py M test/base/populators.py

Log Message: ----------- More API library testing.

Commit: 8a41921b49106276d1e8ed925464e734c07664d8 https://github.com/galaxyproject/galaxy/commit/8a41921b49106276d1e8ed925464e... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)

Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py

Log Message: ----------- Respect permissions when creating HDAs/HDCAs from LDDAs.

Commit: 25e53e13453d594c56cf6f48474d74c7a9a09368 https://github.com/galaxyproject/galaxy/commit/25e53e13453d594c56cf6f48474d7... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)

Changed paths: M test/api/test_history_contents.py

Log Message: ----------- API tests for creating HDCAs from LDDA elements.

Commit: 47737659747955390292723d57381c2d3ca92f63 https://github.com/galaxyproject/galaxy/commit/47737659747955390292723d57381... Author: John Chilton jmchilton@gmail.com Date: 2017-11-14 (Tue, 14 Nov 2017)

Changed paths: R .ci/flake8_lint_include_list.txt R .ci/flake8_wrapper_imports.sh M .ci/jenkins/selenium/run_tests.sh M .travis.yml M README.rst M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/i18n.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M client/galaxy/scripts/mvc/collection/list-of-pairs-collection-creator.js M client/galaxy/scripts/mvc/dataset/dataset-li-edit.js M 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Log Message: ----------- Merge remote-tracking branch 'jmchilton/dev' into lib-to-colllection

Commit: 87987b4c949b881ba59c17caa5fd8559c89eef6a https://github.com/galaxyproject/galaxy/commit/87987b4c949b881ba59c17caa5fd8... Author: Martin Cech marten@bx.psu.edu Date: 2017-11-15 (Wed, 15 Nov 2017)

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templates/show_params.mako M templates/webapps/galaxy/admin/center.mako R templates/webapps/galaxy/library/common/browse_library.mako R templates/webapps/galaxy/library/common/browse_library_opt.mako R templates/webapps/galaxy/library/common/common.mako R templates/webapps/galaxy/library/common/folder_info.mako R templates/webapps/galaxy/library/common/folder_permissions.mako R templates/webapps/galaxy/library/common/import_datasets_to_histories.mako R templates/webapps/galaxy/library/common/ldda_edit_info.mako R templates/webapps/galaxy/library/common/ldda_info.mako R templates/webapps/galaxy/library/common/ldda_permissions.mako R templates/webapps/galaxy/library/common/library_dataset_info.mako R templates/webapps/galaxy/library/common/library_dataset_permissions.mako R templates/webapps/galaxy/library/common/library_dataset_search_results.mako R templates/webapps/galaxy/library/common/library_info.mako R templates/webapps/galaxy/library/common/library_item_info.mako R templates/webapps/galaxy/library/common/library_permissions.mako R templates/webapps/galaxy/library/common/move_library_item.mako R templates/webapps/galaxy/library/common/new_folder.mako R templates/webapps/galaxy/library/common/upload.mako R templates/webapps/galaxy/library/grid.mako R templates/webapps/galaxy/library/index.mako M templates/webapps/reports/run_stats.mako M test/api/test_history_contents.py M test/api/test_jobs.py M test/api/test_libraries.py M test/api/test_page_revisions.py M test/base/driver_util.py M test/base/populators.py M test/base/testcase.py M test/functional/test_toolbox.py M test/galaxy_selenium/components.py M test/galaxy_selenium/data.py M test/galaxy_selenium/navigates_galaxy.py M test/manual/workflows_scaling.py M test/selenium_tests/framework.py M test/selenium_tests/test_collection_builders.py M test/selenium_tests/test_history_dataset_state.py M test/selenium_tests/test_history_sharing.py M test/selenium_tests/test_jupyter.py M 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test/unit/tools_support.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/framework/test_webapp.py M test/unit/workflows/test_modules.py M test/unit/workflows/test_run_parameters.py M test/unit/workflows/test_workflow_progress.py M tools/filters/gff/gff_filter_by_attribute.py M tools/filters/gff/gff_filter_by_feature_count.py M tools/phenotype_association/senatag.py M tox.ini

Log Message: ----------- Merge pull request #25 from jmchilton/lib-to-colllection

Merge with dev and add more tests.

Commit: abe1b240c33c0a2031a56fc52b8bcd5ec34ae27d https://github.com/galaxyproject/galaxy/commit/abe1b240c33c0a2031a56fc52b8bc... Author: John Chilton jmchilton@gmail.com Date: 2017-11-15 (Wed, 15 Nov 2017)

Changed paths: M test/api/test_libraries.py

Log Message: ----------- Fix broken library test I recently added.

Commit: 38c620c62bd7f9cce5c3a792563d88ec5120e3e0 https://github.com/galaxyproject/galaxy/commit/38c620c62bd7f9cce5c3a792563d8... Author: John Chilton jmchilton@gmail.com Date: 2017-11-15 (Wed, 15 Nov 2017)

Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py M test/api/test_history_contents.py M test/api/test_libraries.py M test/base/populators.py

Log Message: ----------- Merge pull request #4998 from martenson/lib-to-colllection

enhance hdca creation API endpoint to accept lddas

Compare: https://github.com/galaxyproject/galaxy/compare/f44cbd5d8210...38c620c62bd7