Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 08eb9859f25dff98edbf2fc4be95012219d389a5 https://github.com/galaxyproject/galaxy/commit/08eb9859f25dff98edbf2fc4be950... Author: Martin Cech <marten@bx.psu.edu> Date: 2017-11-13 (Mon, 13 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py Log Message: ----------- enhance hdca creation endpoint to accept lddas by implementing automatic conversion of any such elements Commit: 5609bfc307cd9a6bdd86cd49128d3c4f8407613b https://github.com/galaxyproject/galaxy/commit/5609bfc307cd9a6bdd86cd49128d3... Author: John Chilton <jmchilton@gmail.com> Date: 2017-11-14 (Tue, 14 Nov 2017) Changed paths: M test/api/test_libraries.py M test/base/populators.py Log Message: ----------- More API library testing. Commit: 8a41921b49106276d1e8ed925464e734c07664d8 https://github.com/galaxyproject/galaxy/commit/8a41921b49106276d1e8ed925464e... Author: John Chilton <jmchilton@gmail.com> Date: 2017-11-14 (Tue, 14 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py Log Message: ----------- Respect permissions when creating HDAs/HDCAs from LDDAs. Commit: 25e53e13453d594c56cf6f48474d74c7a9a09368 https://github.com/galaxyproject/galaxy/commit/25e53e13453d594c56cf6f48474d7... Author: John Chilton <jmchilton@gmail.com> Date: 2017-11-14 (Tue, 14 Nov 2017) Changed paths: M test/api/test_history_contents.py Log Message: ----------- API tests for creating HDCAs from LDDA elements. Commit: 47737659747955390292723d57381c2d3ca92f63 https://github.com/galaxyproject/galaxy/commit/47737659747955390292723d57381... Author: John Chilton <jmchilton@gmail.com> Date: 2017-11-14 (Tue, 14 Nov 2017) Changed paths: R .ci/flake8_lint_include_list.txt R .ci/flake8_wrapper_imports.sh M .ci/jenkins/selenium/run_tests.sh M .travis.yml M README.rst M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/i18n.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M 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Author: Martin Cech <marten@bx.psu.edu> Date: 2017-11-15 (Wed, 15 Nov 2017) Changed paths: R .ci/flake8_lint_include_list.txt R .ci/flake8_wrapper_imports.sh M .ci/jenkins/selenium/run_tests.sh M .travis.yml M README.rst M client/galaxy/scripts/admin.toolshed.js M client/galaxy/scripts/apps/panels/admin-panel.js M client/galaxy/scripts/galaxy.interactive_environments.js M client/galaxy/scripts/galaxy.library.js M client/galaxy/scripts/galaxy.pages.js M client/galaxy/scripts/i18n.js M client/galaxy/scripts/layout/modal.js M client/galaxy/scripts/mvc/annotation.js M client/galaxy/scripts/mvc/collection/collection-li-edit.js M client/galaxy/scripts/mvc/collection/collection-li.js M client/galaxy/scripts/mvc/collection/collection-model.js M client/galaxy/scripts/mvc/collection/collection-view-edit.js M client/galaxy/scripts/mvc/collection/collection-view.js M client/galaxy/scripts/mvc/collection/list-collection-creator.js M 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test/unit/jobs/test_runner_local.py M test/unit/managers/base.py M test/unit/managers/test_CollectionManager.py M test/unit/managers/test_DatasetManager.py M test/unit/managers/test_HDAManager.py M test/unit/managers/test_HDCAManager.py M test/unit/managers/test_HistoryContentsManager.py M test/unit/managers/test_HistoryManager.py M test/unit/managers/test_UserManager.py M test/unit/shed_unit/test_installed_repository_manager.py M test/unit/shed_unit/test_tool_panel_manager.py M test/unit/test_objectstore.py M test/unit/tools/test_actions.py M test/unit/tools/test_collect_primary_datasets.py M test/unit/tools/test_column_parameters.py M test/unit/tools/test_conda_resolution.py M test/unit/tools/test_data_parameters.py M test/unit/tools/test_dataset_matcher.py M test/unit/tools/test_evaluation.py M test/unit/tools/test_execution.py M test/unit/tools/test_history_imp_exp.py M test/unit/tools/test_parameter_parsing.py M test/unit/tools/test_parsing.py M test/unit/tools/test_select_parameters.py M test/unit/tools/test_tool_deps.py M test/unit/tools/test_tool_loader.py M test/unit/tools/test_toolbox.py M test/unit/tools/test_watcher.py M test/unit/tools_support.py M test/unit/visualizations/plugins/test_VisualizationPlugin.py M test/unit/visualizations/plugins/test_VisualizationsRegistry.py M test/unit/web/framework/test_webapp.py M test/unit/workflows/test_modules.py M test/unit/workflows/test_run_parameters.py M test/unit/workflows/test_workflow_progress.py M tools/filters/gff/gff_filter_by_attribute.py M tools/filters/gff/gff_filter_by_feature_count.py M tools/phenotype_association/senatag.py M tox.ini Log Message: ----------- Merge pull request #25 from jmchilton/lib-to-colllection Merge with dev and add more tests. Commit: abe1b240c33c0a2031a56fc52b8bcd5ec34ae27d https://github.com/galaxyproject/galaxy/commit/abe1b240c33c0a2031a56fc52b8bc... Author: John Chilton <jmchilton@gmail.com> Date: 2017-11-15 (Wed, 15 Nov 2017) Changed paths: M test/api/test_libraries.py Log Message: ----------- Fix broken library test I recently added. Commit: 38c620c62bd7f9cce5c3a792563d88ec5120e3e0 https://github.com/galaxyproject/galaxy/commit/38c620c62bd7f9cce5c3a792563d8... Author: John Chilton <jmchilton@gmail.com> Date: 2017-11-15 (Wed, 15 Nov 2017) Changed paths: M lib/galaxy/webapps/galaxy/api/history_contents.py M test/api/test_history_contents.py M test/api/test_libraries.py M test/base/populators.py Log Message: ----------- Merge pull request #4998 from martenson/lib-to-colllection enhance hdca creation API endpoint to accept lddas Compare: https://github.com/galaxyproject/galaxy/compare/f44cbd5d8210...38c620c62bd7