1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/37fb9b1fb62d/ changeset: 37fb9b1fb62d user: dan date: 2011-10-26 22:03:47 summary: Allow Picard based Merge BAM Files tool to work on sam inputs as well as the previously accepted bam. affected #: 1 file

diff -r f335b8bbb91f575f1ffac466c53b907e8623a9a8 -r 37fb9b1fb62de6a304c6c500d9610b7eea2cf2aa tools/samtools/sam_merge.xml --- a/tools/samtools/sam_merge.xml +++ b/tools/samtools/sam_merge.xml @@ -16,10 +16,10 @@ <param name="mergeSD" value="true" type="boolean" label="Merge all component bam file headers into the merged bam file" truevalue="true" falsevalue="false" checked="yes" help="Control the MERGE_SEQUENCE_DICTIONARIES flag for Picard MergeSamFiles. Default (true) correctly propagates read groups and other important metadata" /> - <param name="input1" label="First file" type="data" format="bam" /> - <param name="input2" label="with file" type="data" format="bam" help="Need to add more files? Use controls below." /> + <param name="input1" label="First file" type="data" format="bam,sam" /> + <param name="input2" label="with file" type="data" format="bam,sam" help="Need to add more files? Use controls below." /><repeat name="inputs" title="Input Files"> - <param name="input" label="Add file" type="data" format="bam" /> + <param name="input" label="Add file" type="data" format="bam,sam" /></repeat></inputs><outputs>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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