commit/galaxy-central: guerler: Charts: Unify chart options
1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/7efdd4019ed1/ Changeset: 7efdd4019ed1 User: guerler Date: 2014-03-08 00:48:30 Summary: Charts: Unify chart options Affected #: 19 files diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/_nvd3/config.js --- /dev/null +++ b/config/plugins/visualizations/charts/static/charts/_nvd3/config.js @@ -0,0 +1,28 @@ +define([], function() { + +return { + title : '', + columns : { + y : { + title : 'Values for y-axis' + } + }, + settings : { + x_axis_label : { + title : 'Axis label (x)', + info : 'Provide a label for the \'x\' axis.', + type : 'text', + init : '', + placeholder : 'Axis label' + }, + y_axis_label : { + title : 'Axis label (y)', + info : 'Provide a label for the \'y\' axis.', + type : 'text', + init : '', + placeholder : 'Axis label' + } + } +}; + +}); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js --- /dev/null +++ b/config/plugins/visualizations/charts/static/charts/_nvd3/nvd3.js @@ -0,0 +1,44 @@ +// dependencies +define([], function() { + +// widget +return Backbone.View.extend( +{ + // initialize + initialize: function(app, options) { + this.app = app; + this.options = options; + }, + + // render + draw : function(nvd3_model, chart, request_dictionary, callback) + { + // request data + var self = this; + this.app.datasets.request(request_dictionary, function(data) { + nv.addGraph(function() { + + nvd3_model.yAxis.tickFormat(d3.format('.1f')) + .axisLabel(chart.settings.get('y_axis_label', 'Frequency')) + .axisLabelDistance(30); + + nvd3_model.xAxis.tickFormat(d3.format('.2f')) + .axisLabel(chart.settings.get('x_axis_label', 'Breaks')); + + if (callback) { + callback(nvd3_model); + } + + self.options.svg.datum(data) + .call(nvd3_model); + + nv.utils.windowResize(nvd3_model.update); + + // set chart state + chart.set('state', 'ok'); + }); + }); + } +}); + +}); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/bardiagram/bardiagram.js --- a/config/plugins/visualizations/charts/static/charts/bardiagram/bardiagram.js +++ b/config/plugins/visualizations/charts/static/charts/bardiagram/bardiagram.js @@ -1,5 +1,5 @@ // dependencies -define([], function() { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -13,28 +13,8 @@ // render draw : function(chart, request_dictionary) { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - nv.addGraph(function() { - self.d3_chart = nv.models.multiBarChart(); - - self.d3_chart.yAxis.tickFormat(d3.format('.1f')) - .axisLabel(chart.settings.get('y_axis_label', 'Frequency')) - .axisLabelDistance(30); - - self.d3_chart.xAxis.tickFormat(d3.format('.2f')) - .axisLabel(chart.settings.get('x_axis_label', 'Breaks')); - - self.options.svg.datum(data) - .call(self.d3_chart); - - nv.utils.windowResize(self.d3_chart.update); - - // set chart state - chart.set('state', 'ok'); - }); - }); + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.multiBarChart(), chart, request_dictionary); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/bardiagram/config.js --- a/config/plugins/visualizations/charts/static/charts/bardiagram/config.js +++ b/config/plugins/visualizations/charts/static/charts/bardiagram/config.js @@ -1,28 +1,7 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Bar diagram', - columns : { - y : { - title : 'Values for y-axis' - } - }, - settings : { - x_axis_label : { - title : 'Axis label (x)', - info : 'Provide a label for the \'x\' axis.', - type : 'text', - init : '', - placeholder : 'Axis label' - }, - y_axis_label : { - title : 'Axis label (y)', - info : 'Provide a label for the \'y\' axis.', - type : 'text', - init : '', - placeholder : 'Axis label' - } - } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/histogram/config.js --- a/config/plugins/visualizations/charts/static/charts/histogram/config.js +++ b/config/plugins/visualizations/charts/static/charts/histogram/config.js @@ -1,21 +1,14 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Histogram', mode : 'execute', columns : { - y : { - title : 'Derive frequencies' + x : { + title : 'Values for x-axis' } }, settings : { - x_axis_label : { - title : 'Axis label (x)', - info : 'Provide a label for the \'x\' axis.', - type : 'text', - init : 'Breaks', - placeholder : 'Axis label' - }, bin_size : { title : 'Number of Bins', info : 'Provide the number of histogram bins. The parsed data will be evenly distributed into bins according to the minimum and maximum values of the dataset.', @@ -25,6 +18,6 @@ max : 1000, } } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/histogram/histogram.js --- a/config/plugins/visualizations/charts/static/charts/histogram/histogram.js +++ b/config/plugins/visualizations/charts/static/charts/histogram/histogram.js @@ -1,5 +1,5 @@ // dependencies -define([], function() { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -9,10 +9,10 @@ this.app = app; this.options = options; }, - - // draw - draw: function(chart, request_dictionary) { - + + // render + draw : function(chart, request_dictionary) + { // update request dataset id request_dictionary.id = chart.get('dataset_id_job'); @@ -25,29 +25,11 @@ y: index++ } } - - // send request - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - // set chart state - chart.set('state', 'ok'); - - // draw graph - nv.addGraph(function() { - self.d3_chart = nv.models.multiBarChart(); - - self.d3_chart.xAxis.tickFormat(d3.format('.2f')) - .axisLabel('Breaks'); - - self.d3_chart.yAxis.tickFormat(d3.format('.3f')) - .axisLabel('Frequency') - .axisLabelDistance(30); - - self.options.svg.datum(data) - .call(self.d3_chart); - - nv.utils.windowResize(self.d3_chart.update); - }); + + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.multiBarChart(), chart, request_dictionary, function(nvd3_model) { + nvd3_model.xAxis.tickFormat(d3.format('.2f')); + nvd3_model.yAxis.tickFormat(d3.format('.3f')); }); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/horizontal/config.js --- a/config/plugins/visualizations/charts/static/charts/horizontal/config.js +++ b/config/plugins/visualizations/charts/static/charts/horizontal/config.js @@ -1,12 +1,7 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Bar diagram (horizontal)', - columns : { - y : { - title : 'Values for y-axis' - } - } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js --- a/config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js +++ b/config/plugins/visualizations/charts/static/charts/horizontal/horizontal.js @@ -1,5 +1,5 @@ // dependencies -define(['utils/utils'], function(Utils) { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -13,23 +13,9 @@ // render draw : function(chart, request_dictionary) { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - // add graph to screen - nv.addGraph(function() { - self.d3_chart = nv.models.multiBarHorizontalChart(); - - self.d3_chart.xAxis.tickFormat(function() { return ''; }); - - self.options.svg.datum(data) - .call(self.d3_chart); - - nv.utils.windowResize(self.d3_chart.update); - - // set chart state - chart.set('state', 'ok'); - }); + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.multiBarHorizontalChart(), chart, request_dictionary, function(nvd3_model) { + nvd3_model.xAxis.tickFormat(function() { return ''; }); }); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/line/config.js --- a/config/plugins/visualizations/charts/static/charts/line/config.js +++ b/config/plugins/visualizations/charts/static/charts/line/config.js @@ -1,12 +1,7 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Line chart', - columns : { - y : { - title : 'Values for y-axis' - } - } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/line/line.js --- a/config/plugins/visualizations/charts/static/charts/line/line.js +++ b/config/plugins/visualizations/charts/static/charts/line/line.js @@ -1,5 +1,5 @@ // dependencies -define(['utils/utils'], function(Utils) { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -13,27 +13,8 @@ // render draw : function(chart, request_dictionary) { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - nv.addGraph(function() { - self.chart_3d = nv.models.lineChart(); - - self.chart_3d.xAxis - .tickFormat(d3.format(',f')); - - self.chart_3d.yAxis - .tickFormat(d3.format(',.2f')); - - self.options.svg.datum(data) - .call(self.chart_3d); - - nv.utils.windowResize(self.chart_3d.update); - - // set chart state - chart.set('state', 'ok'); - }); - }); + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.lineChart(), chart, request_dictionary); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/linewithfocus/config.js --- a/config/plugins/visualizations/charts/static/charts/linewithfocus/config.js +++ b/config/plugins/visualizations/charts/static/charts/linewithfocus/config.js @@ -1,12 +1,7 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { - title : 'Line chart (with focus)', - columns : { - y : { - title : 'Values for y-axis' - } - } -}; +return $.extend(true, {}, nvd3_config, { + title : 'Line with focus', +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/linewithfocus/linewithfocus.js --- a/config/plugins/visualizations/charts/static/charts/linewithfocus/linewithfocus.js +++ b/config/plugins/visualizations/charts/static/charts/linewithfocus/linewithfocus.js @@ -1,5 +1,5 @@ // dependencies -define(['utils/utils'], function(Utils) { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -13,27 +13,8 @@ // render draw : function(chart, request_dictionary) { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - nv.addGraph(function() { - self.chart_3d = nv.models.lineWithFocusChart(); - - self.chart_3d.xAxis - .tickFormat(d3.format(',f')); - - self.chart_3d.yAxis - .tickFormat(d3.format(',.2f')); - - self.options.svg.datum(data) - .call(self.chart_3d); - - nv.utils.windowResize(self.chart_3d.update); - - // set chart state - chart.set('state', 'ok'); - }); - }); + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.lineWithFocusChart(), chart, request_dictionary); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/piechart/config.js --- a/config/plugins/visualizations/charts/static/charts/piechart/config.js +++ b/config/plugins/visualizations/charts/static/charts/piechart/config.js @@ -1,12 +1,7 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Pie chart', - columns : { - y : { - title : 'Values for y-axis' - } - } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/scatterplot/config.js --- a/config/plugins/visualizations/charts/static/charts/scatterplot/config.js +++ b/config/plugins/visualizations/charts/static/charts/scatterplot/config.js @@ -1,15 +1,12 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Scatter plot', columns : { x : { title : 'Values for x-axis' - }, - y : { - title : 'Values for y-axis' } } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js --- a/config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js +++ b/config/plugins/visualizations/charts/static/charts/scatterplot/scatterplot.js @@ -1,5 +1,5 @@ // dependencies -define(['utils/utils'], function(Utils) { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -13,26 +13,14 @@ // render draw : function(chart, request_dictionary) { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - nv.addGraph(function() { - self.d3_chart = nv.models.scatterChart() - .showDistX(true) - .showDistY(true) - .color(d3.scale.category10().range()); - - self.d3_chart.xAxis.tickFormat(d3.format('.02f')) - self.d3_chart.yAxis.tickFormat(d3.format('.02f')) + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.scatterChart(), chart, request_dictionary, function(nvd3_model) { + nvd3_model.showDistX(true) + .showDistY(true) + .color(d3.scale.category10().range()); + nvd3_model.xAxis.tickFormat(d3.format('.02f')); + nvd3_model.yAxis.tickFormat(d3.format('.02f')); - self.options.svg.datum(data) - .call(self.d3_chart); - - nv.utils.windowResize(self.d3_chart.update); - - // set chart state - chart.set('state', 'ok'); - }); }); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/stackedarea/config.js --- a/config/plugins/visualizations/charts/static/charts/stackedarea/config.js +++ b/config/plugins/visualizations/charts/static/charts/stackedarea/config.js @@ -1,12 +1,7 @@ -define([], function() { +define(['plugin/charts/_nvd3/config'], function(nvd3_config) { -return { +return $.extend(true, {}, nvd3_config, { title : 'Stacked area', - columns : { - y : { - title : 'Values for y-axis' - } - } -}; +}); }); \ No newline at end of file diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js --- a/config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js +++ b/config/plugins/visualizations/charts/static/charts/stackedarea/stackedarea.js @@ -1,5 +1,5 @@ // dependencies -define(['utils/utils'], function(Utils) { +define(['plugin/charts/_nvd3/nvd3'], function(NVD3) { // widget return Backbone.View.extend( @@ -13,30 +13,13 @@ // render draw : function(chart, request_dictionary) { - // request data - var self = this; - this.app.datasets.request(request_dictionary, function(data) { - nv.addGraph(function() { - // make plot - self.d3_chart = nv.models.stackedAreaChart() - .x(function(d) { - return d.x - }) - .y(function(d) { - return d.y - }) - .clipEdge(true); - - self.d3_chart.xAxis.tickFormat(function() { return ''; }); - - self.options.svg.datum(data) - .call(self.d3_chart); - - nv.utils.windowResize(self.d3_chart.update); - - // set chart state - chart.set('state', 'ok'); - }); + var nvd3 = new NVD3(this.app, this.options); + nvd3.draw(nv.models.stackedAreaChart(), chart, request_dictionary, function(nvd3_model) { + // make plot + nvd3_model.x(function(d) { return d.x }) + .y(function(d) { return d.y }) + .clipEdge(true); + nvd3_model.xAxis.tickFormat(function() { return ''; }); }); } }); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/library/utils.js --- a/config/plugins/visualizations/charts/static/library/utils.js +++ /dev/null @@ -1,152 +0,0 @@ -/** - * Galaxy utilities comprises small functions, which at this point - * do not require their own classes/files -*/ - -// dependencies -define(["libs/underscore"], function(_) { - -// generic function to recieve json from url -function get (url, success, error) { - request('GET', url, {}, success, error); -}; - -// generic function to send json to url -function request (method, url, data, success, error) { - - // encode data into url - if (method == 'GET' || method == 'DELETE') { - if (url.indexOf('?') == -1) { - url += '?'; - } else { - url += '&'; - } - url += $.param(data) - } - - // prepare request - var xhr = new XMLHttpRequest(); - xhr.open(method, url, true); - xhr.setRequestHeader('Accept', 'application/json'); - xhr.setRequestHeader('Cache-Control', 'no-cache'); - xhr.setRequestHeader('X-Requested-With', 'XMLHttpRequest'); - xhr.setRequestHeader('Content-Type', 'application/json'); - xhr.onloadend = function() { - var status = xhr.status; - if (status == 200) { - try { - response = jQuery.parseJSON(xhr.responseText); - } catch (e) { - response = xhr.responseText; - } - success && success(response); - } else { - error && error(status); - } - }; - - // make request - if (method == 'GET' || method == 'DELETE') { - xhr.send(); - } else { - xhr.send(JSON.stringify(data)); - } -}; - -// get css value -function cssGetAttribute (classname, name) { - // place dummy element - var el = $('<div class="' + classname + '"></div>'); - - // required append - el.appendTo(':eq(0)'); - - // get value - var value = el.css(name); - - // remove element - el.remove(); - - // return css value - return value; -}; - -// load css -function cssLoadFile (url) { - // check if css is already available - if (!$('link[href^="' + url + '"]').length) - $('<link href="' + galaxy_config.root + url + '" rel="stylesheet">').appendTo('head'); -}; - -// merge -function merge (options, optionsDefault) { - if (options) - return _.defaults(options, optionsDefault); - else - return optionsDefault; -}; - -// to string -function bytesToString (size, normal_font) { - // identify unit - var unit = ""; - if (size >= 100000000000) { size = size / 100000000000; unit = 'TB'; } else - if (size >= 100000000) { size = size / 100000000; unit = 'GB'; } else - if (size >= 100000) { size = size / 100000; unit = 'MB'; } else - if (size >= 100) { size = size / 100; unit = 'KB'; } else - if (size > 0) { size = size * 10; unit = 'b'; } else - return '<strong>-</strong>'; - - // return formatted string - var rounded = (Math.round(size) / 10); - if (normal_font) { - return rounded + ' ' + unit; - } else { - return '<strong>' + rounded + '</strong> ' + unit; - } -}; - -// unique ide -function uuid(){ - return (new Date().getTime()).toString(36); -}; - -// wrap -function wrap($el) { - var wrapper = $('<p></p>'); - wrapper.append($el); - return wrapper; -}; - -// time -function time() { - // get date object - var d = new Date(); - - // format items - var hours = (d.getHours() < 10 ? "0" : "") + d.getHours(); - var minutes = (d.getMinutes() < 10 ? "0" : "") + d.getMinutes() - - // format final stamp - var datetime = d.getDate() + "/" - + (d.getMonth() + 1) + "/" - + d.getFullYear() + ", " - + hours + ":" - + minutes; - return datetime; -}; - -// return -return { - cssLoadFile : cssLoadFile, - cssGetAttribute : cssGetAttribute, - get : get, - merge : merge, - bytesToString: bytesToString, - uuid: uuid, - time: time, - wrap: wrap, - request: request -}; - -}); diff -r 8ffa9ee618649b042292610cf8d10cff161c5235 -r 7efdd4019ed122743ca920d2d30811737277d6a8 config/plugins/visualizations/charts/static/views/group.js --- a/config/plugins/visualizations/charts/static/views/group.js +++ b/config/plugins/visualizations/charts/static/views/group.js @@ -2,7 +2,7 @@ define(['plugin/library/table', 'plugin/library/ui', 'utils/utils'], function(Table, Ui, Utils) { -// chart config +// widget return Backbone.View.extend( { // columns Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. 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