2 new commits in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/4969f6502d42/ Changeset: 4969f6502d42 Branch: BjoernGruening/add-install_dir-to-perl5lib-and-path-bef-1410949639333 User: BjoernGruening Date: 2014-09-17 10:27:56+00:00 Summary: Add $INSTALL_DIR to PERL5LIB and PATH before starting to install libraries. A few packages need this in order to recognise previous installed packages. Affected #: 1 file diff -r 02738142b8cf5e0372ac5c2b46eeff5f0ab8e87a -r 4969f6502d423feb580946d6b4812a477cff77b4 lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -1105,6 +1105,8 @@ # If set to a true value then MakeMaker's prompt function will always # return the default without waiting for user input. cmd = '''PERL_MM_USE_DEFAULT=1; export PERL_MM_USE_DEFAULT; ''' + cmd += 'export PERL5LIB=$INSTALL_DIR/lib/perl5:$PERL5LIB;' + cmd += 'export PATH=$INSTALL_DIR/bin:$PATH;' if perl_package.find( '://' ) != -1: # We assume a URL to a gem file. url = perl_package https://bitbucket.org/galaxy/galaxy-central/commits/e3b16462112b/ Changeset: e3b16462112b User: dannon Date: 2014-09-22 15:09:07+00:00 Summary: Merged in BjoernGruening/galaxy-central-5/BjoernGruening/add-install_dir-to-perl5lib-and-path-bef-1410949639333 (pull request #499) Add $INSTALL_DIR to PERL5LIB and PATH before starting to install libraries. A few packages need this in order to recognise previous installed packages. Affected #: 1 file diff -r df92b55d194a4d67a1b863c85044eb91c138c74b -r e3b16462112b2ab8150564e183213048e7c027da lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py --- a/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py +++ b/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py @@ -1105,6 +1105,8 @@ # If set to a true value then MakeMaker's prompt function will always # return the default without waiting for user input. cmd = '''PERL_MM_USE_DEFAULT=1; export PERL_MM_USE_DEFAULT; ''' + cmd += 'export PERL5LIB=$INSTALL_DIR/lib/perl5:$PERL5LIB;' + cmd += 'export PATH=$INSTALL_DIR/bin:$PATH;' if perl_package.find( '://' ) != -1: # We assume a URL to a gem file. url = perl_package Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.