1 new changeset in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/fd3391bcd903/ changeset: r5531:fd3391bcd903 user: dan date: 2011-05-10 04:29:17 summary: Fixes for Picard: ReorderSam. affected #: 1 file (9 bytes) --- a/tools/picard/picard_ReorderSam.xml Mon May 09 16:51:14 2011 -0400 +++ b/tools/picard/picard_ReorderSam.xml Mon May 09 22:29:17 2011 -0400 @@ -16,11 +16,11 @@ --allow-contig-len-discord=$allowContigLenDiscord --output-format=$outputFormat #if str( $outputFormat ) == "sam" - --output-sam=$outFileSam + --output=$outFileSam #else if str( $outputFormat ) == "bam" - --output-sam=$outFileBam + --output=$outFileBam #end if - -j "${GALAXY_DATA_INDEX_DIR}/shared/jars/picard-1.41.jar" + -j "${GALAXY_DATA_INDEX_DIR}/shared/jars/ReorderSam.jar" --picard-cmd="ReorderSam" </command><inputs> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.