Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: ebcad566da836dd1e3c7c7362a022688cb352ac8 https://github.com/galaxyproject/galaxy/commit/ebcad566da836dd1e3c7c7362a022... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-27 (Thu, 27 Sep 2018) Changed paths: A lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- First untested attempt at CLI plugin for LSF Commit: d70fa8171aa67878f3fac6b23360d018e42bfc1a https://github.com/galaxyproject/galaxy/commit/d70fa8171aa67878f3fac6b23360d... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-27 (Thu, 27 Sep 2018) Changed paths: M config/job_conf.xml.sample_advanced M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Example for LSF CLI Plugin for job_conf advanced. Commit: d6ea1509bfba4c544af9d43ef849a7576623929f https://github.com/galaxyproject/galaxy/commit/d6ea1509bfba4c544af9d43ef849a... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- More job states Commit: 346ac61dbb683d6609dd3eb5688333302f33f390 https://github.com/galaxyproject/galaxy/commit/346ac61dbb683d6609dd3eb568833... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Nasty parsing required for bsub outputs given CLI expectations. Commit: b1a08ba128cca7f688d21a11fe7502c741e72641 https://github.com/galaxyproject/galaxy/commit/b1a08ba128cca7f688d21a11fe750... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Simplifies status parsing and avoids handling headers that are not there. Commit: ae1695b4c76b102a3a043c1d4dcdb70a0ba30f7e https://github.com/galaxyproject/galaxy/commit/ae1695b4c76b102a3a043c1d4dcdb... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Switches memory with argmap mapping Commit: e4b28fe7ef7958d0ff1eb44c3dd417e022d3c4db https://github.com/galaxyproject/galaxy/commit/e4b28fe7ef7958d0ff1eb44c3dd41... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- bkill instead of bstop for deleting jobs Commit: 33115f66ebfc92467b0f55fe5e2ca6a0604616a7 https://github.com/galaxyproject/galaxy/commit/33115f66ebfc92467b0f55fe5e2ca... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Returns OK when not found. Commit: f09f333766900e4d571d77d0aa4b6213db1e82f3 https://github.com/galaxyproject/galaxy/commit/f09f333766900e4d571d77d0aa4b6... Author: Pablo Moreno <pablo.a.moreno@gmail.com> Date: 2018-09-28 (Fri, 28 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Offending white spaces for PEP Commit: b75b36efa9b454b6e785798431ae708d0b14fa75 https://github.com/galaxyproject/galaxy/commit/b75b36efa9b454b6e785798431ae7... Author: Pablo Moreno <pcm32@users.noreply.github.com> Date: 2018-09-30 (Sun, 30 Sep 2018) Changed paths: M lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- s/id/job_id/ in parse_status to avoid masking Commit: 7b9a21403ca1714b86e5d4d131a7ecdef9de3aa2 https://github.com/galaxyproject/galaxy/commit/7b9a21403ca1714b86e5d4d131a7e... Author: John Chilton <jmchilton@gmail.com> Date: 2018-10-01 (Mon, 01 Oct 2018) Changed paths: M config/job_conf.xml.sample_advanced A lib/galaxy/jobs/runners/util/cli/job/lsf.py Log Message: ----------- Merge pull request #6788 from pcm32/feature/lsf-cli-plugin CLI plugin for LSF Compare: https://github.com/galaxyproject/galaxy/compare/4d915044b2fb...7b9a21403ca1 **NOTE:** This service has been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019.