Branch: refs/heads/release_16.10 Home: https://github.com/galaxyproject/galaxy Commit: 22687410c4829dd9a0e44f55ee93b1020c8eab20 https://github.com/galaxyproject/galaxy/commit/22687410c4829dd9a0e44f55ee93b... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2016-12-09 (Fri, 09 Dec 2016)

Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py

Log Message: ----------- Ensure Conda prefix and cached environment are absolute paths

Otherwise when Conda commands are executed from the job working directory, they will break.

Commit: 879e3d69606e1a4b98bd34f75bf905b9da6edcfa https://github.com/galaxyproject/galaxy/commit/879e3d69606e1a4b98bd34f75bf90... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2016-12-09 (Fri, 09 Dec 2016)

Changed paths: M lib/galaxy/tools/deps/__init__.py

Log Message: ----------- Skip building cache if force_rebuild is False

Also: - re-raise exception if rmtree() fails - change hash(ed)_requirements to hash(ed)_dependencies

Commit: 5a7f9e876e28ea773b79af9bbb887de7cff4aaa7 https://github.com/galaxyproject/galaxy/commit/5a7f9e876e28ea773b79af9bbb887... Author: Nicola Soranzo nicola.soranzo@earlham.ac.uk Date: 2016-12-11 (Sun, 11 Dec 2016)

Changed paths: M lib/tool_shed/galaxy_install/install_manager.py

Log Message: ----------- Correctly update TS repo status

Execute build_dependency_cache() only if using a cached dependency manager. Set tool versions only if the TS repo contains tools. Raise exception if fetch_tool_versions() fails, previously the error message never reached the UI.

Commit: 22c7fcf3fff19ed9f271ada3cd8c007a96444768 https://github.com/galaxyproject/galaxy/commit/22c7fcf3fff19ed9f271ada3cd8c0... Author: John Chilton jmchilton@gmail.com Date: 2016-12-11 (Sun, 11 Dec 2016)

Changed paths: M lib/galaxy/tools/deps/__init__.py M lib/galaxy/tools/deps/resolvers/conda.py M lib/tool_shed/galaxy_install/install_manager.py

Log Message: ----------- Merge pull request #3295 from nsoranzo/release_16.10_tool_install_fixes

[16.10] Tool install fixes

Compare: https://github.com/galaxyproject/galaxy/compare/9dda310cd35e...22c7fcf3fff1