1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/commits/54673424aa68/ Changeset: 54673424aa68 User: Dave Bouvier Date: 2013-10-03 16:15:42 Summary: Clean up migration stage functional test script, add check strings for stage 8. Affected #: 1 file diff -r a3c0180445385eb708e03304769599a8c9cc2760 -r 54673424aa68129d1bae517db268d571feb73fae test/tool_shed/functional/test_1400_review_migration_stages.py --- a/test/tool_shed/functional/test_1400_review_migration_stages.py +++ b/test/tool_shed/functional/test_1400_review_migration_stages.py @@ -20,14 +20,26 @@ def test_0005_load_migration_stages_page( self ): '''Load the migration page and check for the appropriate migration stages.''' - stages = [ - 'emboss_5', 'emboss_datatypes', 'emboss', '5.0.0', '0002_tools.sh', - 'freebayes', '0.9.4_9696d0ce8a962f7bb61c4791be5ce44312b81cf8', 'samtools', '0.1.18', 'FreeBayes requires g++', - 'ncurses', 'zlib', '0003_tools.sh', - 'ncbi_blast_plus', 'blast_datatypes', 'blast+', '2.2.26+', 'blast.ncbi.nlm.nih.gov', 'NCBI BLAST+ tools', '0004_tools.sh', - 'bwa_wrappers', '0.5.9', 'zlib and libpthread', 'Map with BWA for Illumina', '0005_tools.sh', - 'picard', '1.56.0', 'FASTQ to BAM', '0006_tools.sh', - 'lastz', '1.02.00', 'bowtie', '0.12.7', 'Map with Bowtie for Illumina', 'Bowtie requires libpthread', '0007_tools.sh' - ] + stages = [] + migration_message_strings = [ 'The Emboss 5.0.0 tools have been eliminated', + 'The freebayes tool has been eliminated', + 'The NCBI BLAST+ tools', + 'The tools "Map with BWA for Illumina"', + 'FASTQ to BAM, SAM to FASTQ, BAM ', + 'Map with Bowtie for Illumina, ', + 'BAM-to-SAM converts BAM format' ] + migrated_repository_names = [ 'emboss_5', 'emboss_datatypes', 'freebayes', 'ncbi_blast_plus', + 'blast_datatypes', 'bwa_wrappers', 'picard', 'lastz', + 'lastz_paired_reads', 'bowtie_color_wrappers', 'bowtie_wrappers', + 'xy_plot', 'bam_to_sam' ] + migrated_tool_dependencies = [ 'emboss', '5.0.0', 'freebayes', '0.9.4_9696d0ce8a962f7bb61c4791be5ce44312b81cf8', + 'samtools', '0.1.18', 'blast+', '2.2.26+', 'bwa', '0.5.9', 'picard', '1.56.0', + 'lastz', '1.02.00', 'bowtie', '0.12.7', 'FreeBayes requires g++', 'ncurses', 'zlib', + 'zlib and libpthread', 'blast.ncbi.nlm.nih.gov', 'fastx_toolkit', '0.0.13', + 'samtools', '0.1.16', 'cufflinks', '2.1.1', 'R', '2.11.0' ] + migration_scripts = [ '0002_tools.sh', '0003_tools.sh', '0004_tools.sh', '0005_tools.sh', '0006_tools.sh', + '0007_tools.sh', '0008_tools.sh' ] + stages.extend( migration_scripts + migrated_tool_dependencies + migrated_repository_names ) + stages.extend( migration_message_strings ) self.load_galaxy_tool_migrations_page( strings_displayed=stages ) Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.