1 new commit in galaxy-central:

https://bitbucket.org/galaxy/galaxy-central/changeset/49c48236f6ae/ changeset: 49c48236f6ae user: dan date: 2011-11-22 17:56:53 summary: Have rgPicardGCBiasMetrics.xml use fields.path approach instead of directly filtering on data table. affected #: 1 file

diff -r 84187b357d0c6b5bf0c2d9bab5609c10143efb75 -r 49c48236f6ae2d8557420b1393fd763ce5f28889 tools/picard/rgPicardGCBiasMetrics.xml --- a/tools/picard/rgPicardGCBiasMetrics.xml +++ b/tools/picard/rgPicardGCBiasMetrics.xml @@ -4,9 +4,9 @@ --windowsize "$windowsize" --mingenomefrac "$mingenomefrac" -n "$out_prefix" --tmpdir "${__new_file_path__}" -j ${GALAXY_DATA_INDEX_DIR}/shared/jars/picard/CollectGcBiasMetrics.jar #if $genomeSource.refGenomeSource == "history": - --ref-file "$genomeSource.ownFile" + --ref-file "${genomeSource.ownFile}" #else: - --ref "${ filter( lambda x: str( x[0] ) == str( $genomeSource.index ), $__app__.tool_data_tables[ 'all_fasta' ].get_fields() )[0][-1] }" + --ref "${genomeSource.index.fields.path}" #end if </command><requirements><requirement type="package">picard</requirement></requirements>

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

--

This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.