commit/galaxy-central: 2 new changesets
2 new changesets in galaxy-central: http://bitbucket.org/galaxy/galaxy-central/changeset/3d876a5e313b/ changeset: 3d876a5e313b user: dan date: 2011-06-08 19:04:57 summary: Allow conditional statements to not define a 'when' tag for all cases. When a 'when' is not defined, sub-inputs will be empty. Resolves #465. affected #: 1 file (885 bytes) --- a/lib/galaxy/tools/__init__.py Wed Jun 08 12:46:11 2011 -0400 +++ b/lib/galaxy/tools/__init__.py Wed Jun 08 13:04:57 2011 -0400 @@ -756,13 +756,14 @@ case.inputs = self.parse_input_elem( ElementTree.XML( "<when>%s</when>" % case_inputs ), enctypes, context ) else: - case.inputs = {} + case.inputs = odict() group.cases.append( case ) else: # Should have one child "input" which determines the case input_elem = elem.find( "param" ) assert input_elem is not None, "<conditional> must have a child <param>" group.test_param = self.parse_param_elem( input_elem, enctypes, context ) + possible_cases = list( group.test_param.legal_values ) #store possible cases, undefined whens will have no inputs # Must refresh when test_param changes group.test_param.refresh_on_change = True # And a set of possible cases @@ -771,6 +772,16 @@ case.value = case_elem.get( "value" ) case.inputs = self.parse_input_elem( case_elem, enctypes, context ) group.cases.append( case ) + try: + possible_cases.remove( case.value ) + except: + log.warning( "A when tag has been defined for '%s (%s) --> %s', but does not appear to be selectable." % ( group.name, group.test_param.name, case.value ) ) + for unspecified_case in possible_cases: + log.warning( "A when tag has not been defined for '%s (%s) --> %s', assuming empty inputs." % ( group.name, group.test_param.name, unspecified_case ) ) + case = ConditionalWhen() + case.value = unspecified_case + case.inputs = odict() + group.cases.append( case ) rval[group.name] = group elif elem.tag == "upload_dataset": group = UploadDataset() http://bitbucket.org/galaxy/galaxy-central/changeset/91b35c84d7ce/ changeset: 91b35c84d7ce user: dan date: 2011-06-08 19:05:03 summary: Allow boolean inputs (checkbox) to be used as the parameter selector for conditional grouping inputs. Resolves #393. affected #: 5 files (1.9 KB) --- a/lib/galaxy/tools/parameters/basic.py Wed Jun 08 13:04:57 2011 -0400 +++ b/lib/galaxy/tools/parameters/basic.py Wed Jun 08 13:05:03 2011 -0400 @@ -318,7 +318,7 @@ checked = self.checked if value is not None: checked = form_builder.CheckboxField.is_checked( value ) - return form_builder.CheckboxField( self.name, checked ) + return form_builder.CheckboxField( self.name, checked, refresh_on_change = self.refresh_on_change ) def from_html( self, value, trans=None, other_values={} ): return form_builder.CheckboxField.is_checked( value ) def to_python( self, value, app ): @@ -330,6 +330,9 @@ return self.truevalue else: return self.falsevalue + @property + def legal_values( self ): + return [ self.truevalue, self.falsevalue ] class FileToolParameter( ToolParameter ): """ --- a/lib/galaxy/tools/parameters/grouping.py Wed Jun 08 13:04:57 2011 -0400 +++ b/lib/galaxy/tools/parameters/grouping.py Wed Jun 08 13:05:03 2011 -0400 @@ -414,7 +414,10 @@ return "Conditional (%s)" % self.name def get_current_case( self, value, trans ): # Convert value to user representation - str_value = self.test_param.filter_value( value, trans ) + if isinstance( value, bool ): + str_value = self.test_param.to_param_dict_string( value ) + else: + str_value = self.test_param.filter_value( value, trans ) # Find the matching case for index, case in enumerate( self.cases ): if str_value == case.value: --- a/lib/galaxy/web/form_builder.py Wed Jun 08 13:04:57 2011 -0400 +++ b/lib/galaxy/web/form_builder.py Wed Jun 08 13:05:03 2011 -0400 @@ -88,9 +88,17 @@ >>> print CheckboxField( "bar", checked="yes" ).get_html() <input type="checkbox" id="bar" name="bar" value="true" checked="checked"><input type="hidden" name="bar" value="true"> """ - def __init__( self, name, checked=None ): + def __init__( self, name, checked=None, refresh_on_change = False, refresh_on_change_values = None ): self.name = name self.checked = ( checked == True ) or ( isinstance( checked, basestring ) and ( checked.lower() in ( "yes", "true", "on" ) ) ) + self.refresh_on_change = refresh_on_change + self.refresh_on_change_values = refresh_on_change_values or [] + if self.refresh_on_change: + self.refresh_on_change_text = ' refresh_on_change="true" ' + if self.refresh_on_change_values: + self.refresh_on_change_text = '%s refresh_on_change_values="%s" ' % ( self.refresh_on_change_text, ",".join( self.refresh_on_change_values ) ) + else: + self.refresh_on_change_text = '' def get_html( self, prefix="", disabled=False ): if self.checked: checked_text = ' checked="checked"' @@ -102,8 +110,8 @@ # parsing the request, the value 'true' in the hidden field actually means it is NOT checked. # See the is_checked() method below. The prefix is necessary in each case to ensure functional # correctness when the param is inside a conditional. - return '<input type="checkbox" id="%s" name="%s" value="true"%s%s><input type="hidden" name="%s%s" value="true"%s>' \ - % ( id_name, id_name, checked_text, self.get_disabled_str( disabled ), prefix, self.name, self.get_disabled_str( disabled ) ) + return '<input type="checkbox" id="%s" name="%s" value="true"%s%s%s><input type="hidden" name="%s%s" value="true"%s>' \ + % ( id_name, id_name, checked_text, self.get_disabled_str( disabled ), self.refresh_on_change_text, prefix, self.name, self.get_disabled_str( disabled ) ) @staticmethod def is_checked( value ): if value == True: @@ -253,7 +261,7 @@ <div><input type="checkbox" name="bar" value="3" id="bar|3"><label class="inline" for="bar|3">automatic</label></div><div><input type="checkbox" name="bar" value="4" id="bar|4" checked='checked'><label class="inline" for="bar|4">bazooty</label></div> """ - def __init__( self, name, multiple=None, display=None, refresh_on_change=False, refresh_on_change_values=[], size=None ): + def __init__( self, name, multiple=None, display=None, refresh_on_change=False, refresh_on_change_values=None, size=None ): self.name = name self.multiple = multiple or False self.size = size @@ -266,7 +274,7 @@ raise Exception, "Unknown display type: %s" % display self.display = display self.refresh_on_change = refresh_on_change - self.refresh_on_change_values = refresh_on_change_values + self.refresh_on_change_values = refresh_on_change_values or [] if self.refresh_on_change: self.refresh_on_change_text = ' refresh_on_change="true"' if self.refresh_on_change_values: --- a/static/scripts/galaxy.base.js Wed Jun 08 13:04:57 2011 -0400 +++ b/static/scripts/galaxy.base.js Wed Jun 08 13:05:03 2011 -0400 @@ -588,6 +588,23 @@ select_field.get(0).form.submit(); }); + // checkboxes refresh on change + $(":checkbox[refresh_on_change='true']").click( function() { + var select_field = $(this), + select_val = select_field.val(), + refresh = false, + ref_on_change_vals = select_field.attr("refresh_on_change_values"); + if (ref_on_change_vals) { + ref_on_change_vals = ref_on_change_vals.split(','); + var last_selected_value = select_field.attr("last_selected_value"); + if ($.inArray(select_val, ref_on_change_vals) === -1 && $.inArray(last_selected_value, ref_on_change_vals) === -1) { + return; + } + } + $(window).trigger("refresh_on_change"); + select_field.get(0).form.submit(); + }); + // Links with confirmation $( "a[confirm]" ).click( function() { return confirm( $(this).attr("confirm") ); --- a/static/scripts/packed/galaxy.base.js Wed Jun 08 13:04:57 2011 -0400 +++ b/static/scripts/packed/galaxy.base.js Wed Jun 08 13:05:03 2011 -0400 @@ -1,1 +1,1 @@ -if(!Array.indexOf){Array.prototype.indexOf=function(c){for(var b=0,a=this.length;b<a;b++){if(this[b]==c){return b}}return -1}}function obj_length(c){if(c.length!==undefined){return c.length}var b=0;for(var a in c){b++}return 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