Branch: refs/heads/dev Home: https://github.com/galaxyproject/galaxy Commit: 1774c7742ab97652e1e5e8c356d686110b947a5e https://github.com/galaxyproject/galaxy/commit/1774c7742ab97652e1e5e8c356d68... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-14 (Wed, 14 Mar 2018)

Changed paths: M lib/galaxy/dependencies/conditional-requirements.txt

Log Message: ----------- Bump psycopg2 to 2.7.4; this fixes compatibility with the default ubuntu 18.04 postgresql

Commit: 3b8471468e968e65ac74c8aa9564e7f5221af3ce https://github.com/galaxyproject/galaxy/commit/3b8471468e968e65ac74c8aa9564e... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-14 (Wed, 14 Mar 2018)

Changed paths: M lib/galaxy/dependencies/conditional-requirements.txt

Log Message: ----------- Per http://initd.org/psycopg/articles/2018/02/08/psycopg-274-released/, swap to psycopg2-binary package for 2.7.4 (and future) wheels.

Commit: 3df781a55465ec32f79a17f66a373b7317b12fee https://github.com/galaxyproject/galaxy/commit/3df781a55465ec32f79a17f66a373... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-14 (Wed, 14 Mar 2018)

Changed paths: M lib/galaxy/dependencies/__init__.py

Log Message: ----------- Update psycopg2 conditional dependency check to use the new psycopg2-binary package name.

Commit: e84dd5db6b1eb924f4f6897103774152fc0e2cef https://github.com/galaxyproject/galaxy/commit/e84dd5db6b1eb924f4f6897103774... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-23 (Fri, 23 Mar 2018)

Changed paths: M scripts/common_startup.sh

Log Message: ----------- Rudimentary check for old psycopg2==2.4.3, which we clean up before installing psycopg2-binary.

Commit: 30c2ea0c3e61db387e7c31ecb7fd18216c0e083e https://github.com/galaxyproject/galaxy/commit/30c2ea0c3e61db387e7c31ecb7fd1... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-23 (Fri, 23 Mar 2018)

Changed paths: M scripts/common_startup.sh

Log Message: ----------- Make psycopg2 grep a little more robust

Commit: d44b47741ba6e2fd670a150f7d35fb3e8cdb56a9 https://github.com/galaxyproject/galaxy/commit/d44b47741ba6e2fd670a150f7d35f... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-23 (Fri, 23 Mar 2018)

Changed paths: M scripts/common_startup.sh

Log Message: ----------- Specify format to squelch deprecation warning about columns/legacy

Commit: 8742614e5243c61ee15823c0cf8aa512e9bb026f https://github.com/galaxyproject/galaxy/commit/8742614e5243c61ee15823c0cf8aa... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-28 (Wed, 28 Mar 2018)

Changed paths: M scripts/common_startup.sh

Log Message: ----------- Quieter grepping.

Commit: 60ca4d4cc94966598c102ea5a473270ea15e9b22 https://github.com/galaxyproject/galaxy/commit/60ca4d4cc94966598c102ea5a4732... Author: Dannon Baker dannon.baker@gmail.com Date: 2018-03-28 (Wed, 28 Mar 2018)

Changed paths: M scripts/common_startup.sh

Log Message: ----------- Instead of using -q, send to /dev/null, since the early pipe exit blows up pip

Commit: 08c2c5b5ac7a8768a15a886cabed0fdc4963f37c https://github.com/galaxyproject/galaxy/commit/08c2c5b5ac7a8768a15a886cabed0... Author: John Chilton jmchilton@gmail.com Date: 2018-03-29 (Thu, 29 Mar 2018)

Changed paths: M lib/galaxy/dependencies/__init__.py M lib/galaxy/dependencies/conditional-requirements.txt M scripts/common_startup.sh

Log Message: ----------- Merge pull request #5698 from dannon/psycopg2_bump

Bump psycopg2 to 2.7.4;

Compare: https://github.com/galaxyproject/galaxy/compare/a85b8a83cbfe...08c2c5b5ac7a