1 new changeset in galaxy-central:

http://bitbucket.org/galaxy/galaxy-central/changeset/538c42806e79/ changeset: 538c42806e79 user: dan date: 2011-10-03 21:08:21 summary: Fix Tabs to 4 spaces in lib/galaxy/datatypes/genetics.py. affected #: 1 file (-1 bytes)

--- a/lib/galaxy/datatypes/genetics.py Mon Oct 03 13:34:32 2011 -0400 +++ b/lib/galaxy/datatypes/genetics.py Mon Oct 03 15:08:21 2011 -0400 @@ -53,9 +53,9 @@ header = file(dataset.file_name,'r').readlines()[0].strip().split('\t') dataset.metadata.columns = len(header) t = ['numeric' for x in header] - t[0] = 'string' + t[0] = 'string' dataset.metadata.column_types = t - return True + return True

def as_ucsc_display_file( self, dataset, **kwd ): """ @@ -113,8 +113,8 @@ f = open(dataset.file_name,'r') d = f.readlines()[:5] if len(d) == 0: - out = "Cannot find anything to parse in %s" % dataset.name - return out + out = "Cannot find anything to parse in %s" % dataset.name + return out hasheader = 0 try: test = ['%f' % x for x in d[0][1:]] # first is name - see if starts all numerics @@ -123,7 +123,7 @@ try: # Generate column header out.append( '<tr>' ) - if hasheader: + if hasheader: for i, name in enumerate(d[0].split() ): out.append( '<th>%s.%s</th>' % ( str( i+1 ), name ) ) d.pop(0) @@ -285,10 +285,10 @@ if composite_file.optional: opt_text = ' (optional)' if composite_file.get('description'): - rval.append( '<li><a href="%s" type="application/binary">%s (%s)</a>%s</li>' % ( fn, fn, composite_file.get('description'), opt_text ) ) + rval.append( '<li><a href="%s" type="application/binary">%s (%s)</a>%s</li>' % ( fn, fn, composite_file.get('description'), opt_text ) ) else: - rval.append( '<li><a href="%s" type="application/binary">%s</a>%s</li>' % ( fn, fn, opt_text ) ) - rval.append( '</ul></div></html>' ) + rval.append( '<li><a href="%s" type="application/binary">%s</a>%s</li>' % ( fn, fn, opt_text ) ) + rval.append( '</ul></div></html>' ) return "\n".join( rval )

def regenerate_primary_file(self,dataset): @@ -641,9 +641,9 @@ if not dataset.dataset.purged: pp = os.path.join(dataset.extra_files_path,'%s.pheno' % dataset.metadata.base_name) try: - p = file(pp,'r').readlines() + p = file(pp,'r').readlines() except: - p = ['##failed to find %s' % pp,] + p = ['##failed to find %s' % pp,] dataset.peek = ''.join(p[:5]) dataset.blurb = 'Galaxy Rexpression composite file' else:

Repository URL: https://bitbucket.org/galaxy/galaxy-central/

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