1 new commit in galaxy-central: https://bitbucket.org/galaxy/galaxy-central/changeset/beb1986edd28/ changeset: beb1986edd28 user: dan date: 2011-10-25 15:40:26 summary: Minor cleanup in picard_SamToFastq.xml affected #: 1 file diff -r 1b05c45a0c1ac22c4bac8c2f8685eae32ca67ce6 -r beb1986edd2838251441fcc47d7474ac1ed24d27 tools/picard/picard_SamToFastq.xml --- a/tools/picard/picard_SamToFastq.xml +++ b/tools/picard/picard_SamToFastq.xml @@ -39,7 +39,6 @@ #end if 2>&1 || echo "Error running SamToFastq" >&2 - ##&& echo "die die die" >&2 </command><inputs><param name="input_sam" type="data" format="sam" label="SAM file" /> @@ -85,6 +84,7 @@ <param name="read1_max_bases_to_write" value="" /><param name="re_reverse" value="True" /><param name="include_non_pf_reads" value="False" /> + <param name="clipping_action" value="" /><param name="clipping_attribute" value="" /><param name="include_non_primary_alignments" value="False" /><output name="output_fastq1" file="random_phiX_1.fastqsanger"/> @@ -99,6 +99,7 @@ <param name="read2_max_bases_to_write" value="" /><param name="re_reverse" value="True" /><param name="include_non_pf_reads" value="False" /> + <param name="clipping_action" value="" /><param name="clipping_attribute" value="" /><param name="include_non_primary_alignments" value="False" /><output name="output_fastq1" file="bwa_wrapper_in2.fastqsanger" lines_diff="64"/><!-- 16 unaligned fastq blocks not present in original sam file --> Repository URL: https://bitbucket.org/galaxy/galaxy-central/ -- This is a commit notification from bitbucket.org. You are receiving this because you have the service enabled, addressing the recipient of this email.